Sus scrofa (pig): 100512353
Help
Entry
100512353 CDS
T01009
Symbol
SHANK1
Name
(RefSeq) LOW QUALITY PROTEIN: SH3 and multiple ankyrin repeat domains protein 1
KO
K15009
SH3 and multiple ankyrin repeat domains protein
Organism
ssc
Sus scrofa (pig)
Pathway
ssc04724
Glutamatergic synapse
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09150 Organismal Systems
09156 Nervous system
04724 Glutamatergic synapse
100512353 (SHANK1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ank_2
Ank
Ank_4
SAM_1
Ank_5
SH3_2
SAM_2
PDZ_6
PDZ
SH3_1
SH3_9
FERM_f0
SAM_PNT
Motif
Other DBs
NCBI-GeneID:
100512353
NCBI-ProteinID:
XP_003127422
Ensembl:
ENSSSCG00000003215
UniProt:
A0A8D1R2L1
LinkDB
All DBs
Position
6:complement(55452095..55496304)
Genome browser
AA seq
2167 aa
AA seq
DB search
MTHSPASSEDEERHSASECPEGGSESDSSPDGPGRGPRGTRGRGSGAPGSLASVRGLQGR
SMSVPDDAHFSMMVFRIGIPDLHQTKCLRFNPDATIWTAKQQVLCALSESLQDVLNYGLF
QPATSGRDANFLEEERLLREYPQSFEKGVPYLEFRYKTRVYKQTNLDEKQLAKLHTKTGL
KKFLEYVQLGTSDKVARLLDKGLDPNYHDSDSGETPLTLAAQTEGSVEVIRTLCLGGAHI
DFRARDGMTALHKAACARHCLALTALLDLGGSPNYKDRRGLTPLFHTAMVGGDPRCCELL
LYNRAQLGIADENGWQEIHQACQRGHSQHLEHLLFYGAEPGAQNASGNTALHICALYNKE
TCARILLYRGANKDVKNNSGQTPFQVAVIAGNFELGELIRNHREQDVVPFQESPKYAARR
RGPPGAGLTVPPALLRANSDTSMALPDWMVFAAPGTSSTGAPGPTSGPQGQSQPSAPSTK
LSTGTLRSASXPRGARARSPSRGRHPEEAKRQPRGRPSSSGTPREGPAGGTGGPXGPGGS
LGSRGRRRKLYSAVPGRSFMAVKSYQAQAEGEISLSKGEKIKVLSIGEGGFWEGQVKGRV
GWFPSDCLEEVANRSQEAKQESRSDKAKRLFRHYTVGSYDSFDAPSLMDGIGPGSDYIIK
EKTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAGLRMGD
FLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVTRHPDMDEAVHKKAPQQAKRLPPP
AVSLRSKSMTSELEEMEYEQQPPPVPSMEKKRTVYQMALNKLDEILAAAQQTISASESPG
PGGLASLGKHRPKGFFATESSFDPHHRSQPSYERPSYLPPGPGLMLRQKSIGAAEDDRPY
LAPPAMKFSRSLSVPGSEDIPPPPTTSPPEPPYSTPPAPSSSGRLTPSPRGGPFNPSSGG
PLPASSPASFDGPSPPDTRVGSREKSLYHSGPLPPAHHHPPHHHHHHAPPPQPHHHHAHP
PHPPEMETGGSPDDPPPRLALGPQPSLRGWRGGGPSPTPGALSPSHHGSGAGGSGSSQAP
ALRYFQLPPRAASAAMYVPARSGRGRKGPLVKQTKVEGEPQKGGGLPPAPSPTSPASPQP
PPAAAAPSEKNSIPIPTIIIKAPSTSSSGRSSQGSSTEAEPPTQPETAGGGGGGGSSTSS
PAPAVSPVPPXPSPVPTPASPSGPATLDFTSQFGAALVGAARREGGWQNEARRRSTLFLS
TDAGDEDGGDSSLGPGAPPGPRLRHSKSIDEGMFSAEPYLRLESAGAGGGSAYGGYAAGS
RAYGSSGSSSAFTSFLPPRPLVHPLTGKALDPASPLGLALAARERALKESSEGGGAPQPP
PRPPSPRYEAPPPTPHHHSPHAHHEPVLRLWGASPPDPARRELGYRAGLGSQEKSLPASP
PAARRSLLHRLPPTAPGVGPLLLQLGPEPPPPHAGVSKPWRSGAPEEPERLPLHVRFLEN
CQPRASGAGGRGPPAEDGPGVPPPSPRRSVPPSPTSPRGSEENGLPLLVLPPPAPSVDVE
DGEFLFVEPLPPPLEFSNSFEKPESPLTPGPPLPLPDPPTPTTPLPPVPPPAVAAAPPTL
DSTASSLTSYDSEVATLTQGAPAAPGDPPPPGPPAPAAPAPPAPQPGPDPPPGTDSGIEE
VDSRSSSDHPLETISSASTLSSLSAEGGGSAGGGGGVGGGGASVASGPELLDTYVAYLDG
QAFGGSVTPGPPYPPQLMTPSKLRGRALGASGGLRPGPSGGLRDPVTPTSPTISVTGAGT
DGLLALSGCPGPSTAGVAGGPVAVEPEGPPVPLPSASSLPRKLLPWEEGPGPPPPPLPGP
LTQPQASALATVKASIISELSSKLQQFGGASAAGGALPWARGGSGGSGDSHHGGASYVPE
RTSSLQRQRLSEDAQSSLLSKPVSSLFQNWPKPPLPPLPAGTGVPPSAAAAPGATSPSAS
SSSTSARHLQGVEFEMRPPLLRRAPSPSLLPASEHKVSPAPRPSSLPILPSGPLYPGLFD
IRGSPTGGAGGSADPFAPVFVPPHPGMSGGLGGALSGASRSLSPTRLLSLPPDKPFGAKP
LGFWTKFDVADWLEWLGLAEHRARFLDHEIDGSHLPALTKEDYVDLGVTRVGHRMNIDRA
LKFFLER
NT seq
6504 nt
NT seq
+upstream
nt +downstream
nt
atgacccacagccccgcgtccagcgaggacgaggaacgccacagtgccagcgagtgtccc
gaggggggctcagagtccgacagctccccagacgggcccgggagaggcccccgggggacc
cggggccgaggcagcggggcacctggtagcctggcctcggtccgaggcctccagggccgc
tccatgtctgtcccggacgacgcccacttcagcatgatggtcttcaggattggcatcccg
gacctgcaccagacaaaatgcctgcgtttcaaccccgatgcaaccatatggacagccaag
cagcaggtgctctgtgccctgagcgagagcctgcaggatgtcctcaactacggcctgttc
cagcccgccacctcgggccgcgacgccaacttcctagaggaggagcggctgctgcgggag
tatccccagtccttcgagaagggggtaccctatctggagttccgatacaagacccgagtt
tacaagcagaccaacctggatgagaagcagctggccaagttgcacacgaagacggggttg
aagaagtttctggagtacgtgcagctcgggacgtccgacaaggtggcaaggctgctggac
aaggggctggaccccaattatcacgactcggattcaggagaaacgcctctgacgctggct
gcccagacagaaggctcggtagaggtgattcgaaccctgtgcctgggcggggcccacatc
gacttccgggcccgggatggcatgaccgcgctacacaaggccgcctgtgcccgtcactgc
ctcgctctcacggcactcctggaccttggaggctcccccaactacaaggaccgccggggc
ctgacccctctgttccatacggctatggtggggggtgacccccgctgctgtgagctgctt
ctgtacaacagggcccagctgggcatagctgatgagaacggctggcaggagatccaccag
gcctgccagcggggccactctcagcacctggaacacctgctcttctacggggcagagccc
ggagcccagaacgcctcagggaacacagccctgcacatctgcgccctctacaacaaggag
acgtgtgctcggatcctcctctatcgaggggccaacaaagatgtgaagaataacagcgga
cagacccccttccaggtggcagtgatcgctgggaactttgaactgggggagttgatccgc
aaccatcgagagcaggacgtggtgcccttccaggagtcccccaagtatgcagctcggcga
cggggacccccaggcgcagggctgacggtgccccccgcgctgctgcgggccaacagtgat
accagcatggccctgcctgactggatggtgttcgccgccccgggaacctcgtctaccggg
gcccccggccctacctcagggccccagggccagtcgcagccctcagcccccagcaccaag
ctcagcactgggaccctccgaagtgccagcnagccccgaggtgcccgggcccgctcccca
tcccgcgggaggcaccctgaggaggcaaagaggcagccccgtggacggcccagctccagc
gggacaccccgggaaggcccagctgggggcacagggggccccnggggccctgggggctcc
ctgggcagccgcgggagacgcaggaagctctactcagcggtccccggacgctccttcatg
gctgtcaagtcctaccaggcccaagccgagggcgagatctccctgagcaaaggcgagaag
atcaaagtgcttagcatcggggaaggaggcttctgggaaggccaggtcaaaggtagagtc
ggctggttcccttccgactgcctggaagaggtggccaatcgctcccaggaggcaaagcaa
gaaagccgaagtgacaaggcaaagaggctcttccggcattataccgtgggctcctacgac
agctttgatgccccaagtttgatggatgggattggcccagggagcgattacatcattaag
gagaagacagttctgctgcagaagaaggacagtgaggggtttgggttcgtgctccggggg
gccaaggcgcagacccccatcgaggagttcacccccaccccggccttcccggcgctgcag
tatctggagtcggtggacgagggtggtgtggcatggcgagccggactgcgaatgggagac
ttcctcatcgaggtgaatgggcaaaatgtggtgaaggtcggccaccgacaggtggtgaac
atgatccgtcaagggggcaacacgctgatggtcaaggtggtgatggttaccaggcacccg
gacatggatgaggcggttcataagaaagcaccccagcaggctaagcggctgccgccccca
gccgtctccctgcgttccaagtccatgacctcagagctggaggagatggagtacgagcag
cagcccccgccggtgcccagcatggagaaaaagcggaccgtgtatcagatggctctcaac
aaactggatgaaattttggccgcagctcagcagaccatcagtgcaagtgagagtccgggg
cctggtggcctcgcgtccctgggcaaacaccgacccaaaggtttctttgccactgagtcg
agctttgatccccatcaccgctctcagccgagttatgaacgtccttcctacctgccccca
ggccctgggctcatgctccggcaaaaatctatcggggcggcagaagatgatagaccctac
ctagcacccccagccatgaagttcagccgcagcctgtctgtgcctggctcggaggacatc
cccccgccgcccaccacgtccccaccagagccgccctacagcacacctccagccccctcc
tcctccggccgcctcactccctccccccggggtgggcccttcaaccccagctcaggtggc
cccctccctgcctcttccccggcgtcctttgatgggccctcccctcctgacactcgtgta
gggagccgggagaagagcttgtaccacagcgggcctctgccccctgcccaccaccacccg
ccccaccaccaccaccatcacgccccgcccccccagccgcaccaccaccacgcccatccc
ccccatcccccggagatggagaccggcggctcccccgacgaccccccaccccgactggct
ctggggccccagcccagcctgcgaggctggcggggcggcgggcccagcccgaccccgggg
gccctgtcgccgtcgcaccacggcagcggggccgggggcagcggctcctcccaggccccg
gccctgcgctacttccagctgcctccccgggcggccagcgcggccatgtacgtgccagcc
cgctcggggcgcgggcgcaagggcccgctggtcaagcagaccaaagtcgaaggagagccc
cagaagggcggcggcctcccgcccgccccctcgcccacgtctccggcgtccccgcagccg
cccccggccgcggccgccccgtcggagaaaaactccatccccatccctaccatcatcatc
aaggctccatccaccagtagcagcggccgcagcagccagggcagcagcaccgaggcagag
cccccgacccagcccgagaccgcgggcgggggcggtggcggcggctcctccacgtcgagc
cccgccccggccgtgtcgcccgtgcctccgntcccctcgcccgtgcccacccccgcctcg
cccagcggcccagccaccctcgatttcaccagccagttcggagcggccctggtgggggcg
gctcggagagaagggggctggcagaacgaagcccgccggcggtccacgctcttcctgtcc
accgacgcaggggacgaggacggcggcgacagctcgctaggccccggggcgcccccgggc
ccccgactgcgccactccaaatccatcgacgagggcatgttttccgccgagccctacctc
cggctggagtccgcaggcgccgggggcggcagcgcctacgggggctacgcagccggcagc
cgcgcctacgggagcagcgggagcagcagcgccttcaccagcttcctgccgccgcgaccc
ctggtccacccgctaaccggcaaggccctggacccagcctccccgctcgggctggccctg
gccgcccgcgagcgggcgctgaaggagtcctcggagggcggcggggccccccagccccct
cccaggcccccgtcgccccgctacgaggccccgccgcccaccccgcaccaccactcgccc
cacgcccatcacgagccggtgctgcgtctctggggggcctcaccccccgacccggcccgc
cgcgagctggggtaccgggcaggcctgggcagccaggagaagtcccttccggccagcccg
ccagccgcccggcgctccctgctgcaccgcctgccgcccaccgctcccggggtcgggccc
ctcctgctgcagctggggcccgagcccccgcccccgcacgccggggtgagcaagccttgg
cggtccggagccccggaggagccggagcggctgcccctccacgtgcggttcctcgagaac
tgccagccccgggccagcggggcgggtgggaggggaccgcccgcggaggacgggcccggg
gtcccgccgcccagcccacgccggtcggtgcccccctcgccgacctccccgcggggcagt
gaagagaatgggcttcctctgctagtcctgccgccgcccgccccctcggtggacgtggag
gacggggagttcctctttgtggaaccgctgcccccacctctggagttctccaacagcttc
gagaagccagagtcacccctgacgcccgggcctcccctccctctgccggacccccccact
ccgaccaccccgttgcccccggtgccgccccctgcggtggccgccgcccctcccaccctg
gactccaccgcctccagcctgacttcctatgacagcgaggtggcgacgttgacccagggg
gcccccgcagctcccggggacccccctccgccaggtccaccagccccagctgccccagcg
ccccctgccccacagcctggcccagaccctcctcccggcacggattctggcatcgaggag
gtggacagtcgaagcagcagtgaccaccccctggagaccatcagcagtgcatccacgctc
agcagcctgtctgccgagggcgggggcagtgcagggggagggggtggtgtcggcggcggt
ggcgccagtgtggccagcgggccggagcttctggacacatatgtggcctacctggatggc
caggccttcggggggagtgtcactcctggcccaccataccccccgcagctcatgacaccc
tcaaagctccggggccgggcgcttggggccagtggagggctgcggccaggccccagtggg
ggactgcgagacccagtcactcccactagccccaccatctcggtgacaggggctggaacg
gatgggctgctggccctgagtggttgcccaggaccctcgacggcaggcgtggctgggggg
ccagtggctgtagagccagaaggcccaccggtgcccttgccgtccgcctcctccctgcct
cggaagctgctgccctgggaggagggcccgggcccaccgccaccacccctgcccgggccc
ctaacccagcctcaggcctcagccttggccacagtaaaagccagcatcatcagtgaactc
agctccaagcttcagcagttcgggggcgcctctgcagctggtggcgctctgccctgggcc
cggggaggcagcgggggaagtggggacagccatcacgggggagccagctacgtccccgag
aggacttcctccctgcagcggcagagactctcggaagacgcccagagctcgctcctctcc
aaacctgtcagcagcctgtttcagaactggcccaaaccacccctgccgccgctccccgca
ggaactggggtgcccccttcagcggctgcagccccgggggccacctcaccgtcagcctcc
tcctcctccacgtccgcccgccacctccagggcgtggagttcgagatgcggccacctctg
ctccgccgggcccccagcccctccctgctgcccgcctcggagcacaaggtcagccctgcg
ccccggccctcgtctctgcccatcctgccttccggacccctctacccgggcctctttgac
atccgcggctcccccaccggaggggcaggaggctcagctgaccccttcgcccctgtcttc
gtgccaccacaccccgggatgtccgggggtctcggtggagccttgtcgggggcctcccgc
tccctctcacccacccgcctgctttccctgcccccggacaagccgttcggcgctaaacct
ctggggttctggaccaagttcgacgtggctgactggctggagtggctgggcttggctgag
caccgagcccggttcctggaccacgagatcgacggctcccacctgcccgccttgaccaag
gaggactacgtcgacctgggggtgaccagagtgggccaccgcatgaacatcgaccgggct
ctcaaattttttctggagaggtga
DBGET
integrated database retrieval system
