Sus scrofa (pig): 100512557
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Entry
100512557 CDS
T01009
Symbol
DDX42
Name
(RefSeq) LOW QUALITY PROTEIN: ATP-dependent RNA helicase DDX42
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
ssc
Sus scrofa (pig)
Pathway
ssc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100512557 (DDX42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ssc03041
]
100512557 (DDX42)
Enzymes [BR:
ssc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
100512557 (DDX42)
Spliceosome [BR:
ssc03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
100512557 (DDX42)
Complex B
100512557 (DDX42)
Complex C
U2 SnRNP specific factors
100512557 (DDX42)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
ERCC3_RAD25_C
P-loop_SecA
Motif
Other DBs
NCBI-GeneID:
100512557
NCBI-ProteinID:
XP_020922429
Ensembl:
ENSSSCG00000017289
LinkDB
All DBs
Position
12:complement(15114199..15165257)
Genome browser
AA seq
941 aa
AA seq
DB search
MNWNKGGPGTKRGFGFGGFAISAGKKEEPKLPQQSHSAFGATSSSSGFGKTAPPQLPSFY
KIGSKRANFDEENAYFEDEEEDSSNVDLPYIPAENSPTRQQFHSKPVDSDSDDDPLEAFM
AEVEDQAARDMKRLEEKDKERKNVKGIRDDIEEEDDQEAYFRYMAENPTAGVVQEEEEDN
LEYDSDGNPIAPSKKIIDPLPPIDHSEIDYPPFEKNFYNEHEEITNLTPQQLIDLRHKLN
LRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTG
SGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAV
YGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQ
VRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHS
GPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKV
ISDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYT
LLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNAWFRKSRFKGGKGKKLNIGGGGLGY
RERPGLGSENSDRGNNNNVMSNYEAYKPSTGAMGDRLTAMKAAFQSQYKSHFVAASLSNQ
KAGSSAAGASGWTSAGSLNSVPTNSAQQGHNSPDSPIAGATKGVPAFGSAGNLSSAPVTY
PSAGAQGVNNTAPGNNSREGTGGGNGKRERYTENRGGSRHSHGESGNRHGESPRHGDGGR
HGDGYRYPESSSRHADGRRHTDGHPHGENRHGGGGGRHGESRGASDGRNGESRKESCNRE
SKMDPKADSTKADKTDSKTDKTADGFAVPEPPXRKKSRWDS
NT seq
2826 nt
NT seq
+upstream
nt +downstream
nt
atgaactggaataaaggtggccctggcactaagcggggatttggctttggaggttttgcc
atcagtgctggaaagaaggaggaaccaaaactcccacaacagtcccatagtgcctttggg
gcaaccagctcttcttctggatttggaaagacggctccaccgcagctcccttctttctac
aaaattggttctaaacgggctaactttgatgaagaaaatgcatattttgaagatgaggaa
gaagattctagcaatgttgatttaccttacattcctgctgaaaactcacctacccgccag
caattccattccaagccagttgattctgacagtgatgatgatccattagaggcattcatg
gctgaagtggaggatcaagcagctagagacatgaagaggcttgaagaaaaggacaaagaa
agaaaaaacgtgaagggtattcgagatgacattgaagaggaagatgaccaagaagcttat
tttcggtacatggctgagaatccaactgctggtgtcgtccaagaggaggaggaagataat
ttggaatatgatagtgatgggaatccaattgcaccttccaaaaaaatcattgatcctctt
cctcccattgatcactcagagattgactatccaccatttgaaaaaaatttttacaatgaa
catgaagagataaccaacctcaccccacagcagctaatagatctccgacataagctcaat
cttcgggtttctggtgctgcacctcctagaccaggaagtagttttgctcattttgggttt
gatgaacaactgatgcaccagattcggaaatctgaatacacacagcccactccaatacag
tgccagggtgtacctgtggcgttaagtggtagagacatgattggtattgccaaaacaggc
agtggaaaaactgcagcctttatctggcccatgttgattcatataatggaccagaaggaa
ttggagccaggtgatggaccaattgcggtgattgtgtgtcctactagggagctttgccag
cagatccatgcagaatgtaagcggtttgggaaggcgtataatcttcgatcagtggctgtg
tatggaggagggagcatgtgggagcaggccaaggcccttcaggagggggcagagattgtt
gtctgtacaccaggtcgactgattgatcatgtgaagaagaaagctactaaccttcaaaga
gtgtcttaccttgtatttgatgaagcagatcggatgtttgacatgggatttgaataccag
gtgcgatccatagcaagtcacgtccgtcctgacagacagactctcttattcagtgccact
tttcggaaaaagattgaaaaactggccagagacatcctgattgaccccattcgtgtggtg
cagggagatattggagaggcaaacgaagatgtaactcagattgtggagattctccattct
gggcctagtaaatggaactggcttactcgacgtctagtggaatttacctcttcagggagt
gttctcctgtttgttactaaaaaagccaatgctgaagagctagccaataaccttaagcag
gagggtcataatctcggcctactccatggggacatggatcagagtgaaagaaacaaggtt
atttcagactttaagaaaaaagacatcccagtactcgtggccacagatgtcgcagcccgt
ggtctggacattccttcaattaagaccgtcattaactatgatgtggcacgagatattgat
acccacactcataggattggccgcacaggccgagcgggtgagaagggtgtggcctatacc
ttgctgacccccaaggacagcaattttgctggtgaccttgtccggaacctggagggagcc
aatcagcatgtttccaaggaactcctagatctggcaatgcagaatgcctggtttcggaag
tcccgcttcaaaggagggaaagggaaaaagctgaacattggtggaggaggcctaggctac
agggagaggcctggcctaggctctgagaactcggaccgaggaaataataacaatgtaatg
agcaattatgaggcctacaagccctccacaggagccatgggagatcggctgacagcaatg
aaagcagctttccagtcacagtacaagagtcactttgtcgctgccagcttaagcaaccag
aaggctggaagctctgctgctggagcaagtggatggactagtgcagggagcttgaattca
gttccaactaattcagcccaacagggtcataacagtcctgacagccctattgccggtgcc
accaagggcgtcccagcctttggcagtgctggcaacctcagcagcgccccagtgacctac
ccttctgccggagcccagggagtcaacaacacagctccagggaataacagccgagaaggg
actgggggtggcaatgggaagagagagcgatatactgagaaccggggtggcagccgacat
agtcatggagagagtggcaatcggcacggtgagagcccgcgtcatggagatggtggtcgc
catggagatggataccgctacccagaaagcagcagccgtcatgccgatggccggcgtcac
actgatggccaccctcatggagagaacaggcacggaggaggtggaggccgccacggggag
agccgaggcgcaagcgatggtcggaatggtgaaagcaggaaagaaagttgtaatcgtgag
agcaagatggaccccaaagcagacagcaccaaggcggataagacagacagcaagacagat
aagacagctgatgggtttgctgtccctgagcccccanagcgcaagaaaagtcgatgggac
agttaa
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