Sus scrofa (pig): 100512659
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Entry
100512659 CDS
T01009
Symbol
SF3B3
Name
(RefSeq) splicing factor 3B subunit 3
KO
K12830
splicing factor 3B subunit 3
Organism
ssc
Sus scrofa (pig)
Pathway
ssc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100512659 (SF3B3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ssc03021
]
100512659 (SF3B3)
03041 Spliceosome [BR:
ssc03041
]
100512659 (SF3B3)
03036 Chromosome and associated proteins [BR:
ssc03036
]
100512659 (SF3B3)
Transcription machinery [BR:
ssc03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
100512659 (SF3B3)
Spliceosome [BR:
ssc03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
100512659 (SF3B3)
Complex B
100512659 (SF3B3)
Complex C
U2 SnRNP specific factors
100512659 (SF3B3)
Chromosome and associated proteins [BR:
ssc03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
100512659 (SF3B3)
TFTC complex
100512659 (SF3B3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_BBS7
Motif
Other DBs
NCBI-GeneID:
100512659
NCBI-ProteinID:
XP_020949462
Ensembl:
ENSSSCG00000002725
UniProt:
A0A8D1ZRL6
A0A8D1KZJ0
LinkDB
All DBs
Position
6:13524519..13578681
Genome browser
AA seq
1217 aa
AA seq
DB search
MFLYNLTLQRATGISFAIHGNFSGTKQQEIVVSRGKILELLRPDPNTGKVHTLLTVEVFG
VIRSLMAFRLTGGTKDYIVVGSDSGRIVILEYQPSKNMFEKIHQETFGKSGCRRIVPGQF
LAVDPKGRAVMISAIEKQKLVYILNRDAAARLTISSPLEAHKANTLVYHVVGVDVGFENP
MFACLEMDYEEADNDPTGEAAANTQQTLTFYELDLGLNHVVRKYSEPLEEHGNFLITVPG
GSDGPSGVLICSENYITYKNFGDQPDIRCPIPRRRNDLDDPERGMIFVCSATHKTKSMFF
FLAQTEQGDIFKITLETDEDMVTEIRLKYFDTVPVAAAMCVLKTGFLFVASEFGNHYLYQ
IAHLGDDDEEPEFSSAMPLEEGDTFFFQPRPLKNLVLVDELDSLSPILFCQIADLANEDT
PQLYVACGRGPRSSLRVLRHGLEVSEMAVSELPGNPNAVWTVRRHIEDEFDAYIIVSFVN
ATLVLSIGETVEEVTDSGFLGTTPTLSCSLLGDDALVQVYPDGIRHIRADKRVNEWKTPG
KKTIVKCAVNQRQVVIALTGGELVYFEMDPSGQLNEYTERKEMSADVVCMSLANVPPGEQ
RSRFLAVGLVDNTVRIISLDPSDCLQPLSMQALPAQPESLCIVEMGGTEKQDELGERGSI
GFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPVKLFRVRMQGQEAVLAMSSRSW
LSYSYQSRFHLTPLSYETLEFASGFASEQCPEGIVAISTNTLRILALEKLGAVFNQVAFP
LQYTPRKFVIHPESNNLIIIETDHNAYTEATKAQRKQQMAEEMVEAAGEDERELAAEMAA
AFLNENLPESIFGAPKAGNGQWASVIRVMNPIQGNTLDLVQLEQNEAAFSVAVCRFSNTG
DDWYVLVGVAKDLILNPRSVAGGFVYTYKLVNNGEKLEFLHKTPVEEVPAAIAPFQGRVL
IGVGKLLRVYDLGKKKLLRKCENKHIANYISGIQTIGHRVIVSDVQESFIWVRYKRNENQ
LIIFADDTYPRWVTTASLLDYDTVAGADKFGNICVVRLPPNTNDEVDEDPTGNKALWDRG
LLNGASQKAEVIMNYHVGETVLSLQKTTLIPGGSESLVYTTLSGGIGILVPFTSHEDHDF
FQHVEMHLRSEHPPLCGRDHLSFRSYYFPVKNVIDGDLCEQFNSMEPNKQKNVSEELDRT
PPEVSKKLEDIRTRYAF
NT seq
3654 nt
NT seq
+upstream
nt +downstream
nt
atgttcctgtacaacttgaccttgcagcgagccactggcatcagctttgccattcatgga
aacttctctggaaccaaacaacaggaaattgttgtttcccgggggaaaatcttagagctg
cttcgccctgaccccaacactggcaaagtacacactctactaactgtggaagtgtttggt
gtcatccggtctctcatggcctttaggttgacgggtggcacgaaagattacattgtggtt
ggcagtgactcaggtcggattgttatcctggaataccagccatctaagaacatgtttgaa
aaaattcaccaagaaacctttggcaaaagtggatgccgccgcattgttcctggccagttc
ttagctgtggatcccaaagggagagctgttatgattagtgccatcgagaaacagaaattg
gtatatatcttgaatagagatgctgcagcccggcttaccatttcatctcccctggaggcc
cacaaagcgaacactttagtatatcatgtggttggagtggatgtgggatttgaaaatcca
atgtttgcttgtctggaaatggattatgaggaagcagacaatgatccaactggggaagcc
gcggctaatacccagcagacgcttactttctatgagttagaccttggtttaaatcatgtg
gtccgaaaatacagtgaacctttggaagaacatggcaacttccttattacagttcctgga
gggtcagatggtccaagtggagtgctgatctgttctgaaaactatatcacttacaagaac
tttggtgaccagccagatatccgctgtccgattcccaggagacggaatgacctggatgac
cccgaaagaggaatgatttttgtctgctctgccacccataagaccaaatcgatgttcttc
tttttggcccaaactgagcagggagatatctttaagatcactttggagacagatgaagat
atggttactgagatccggctcaagtattttgatactgtgcctgttgctgctgccatgtgt
gtgcttaaaacaggcttcctttttgtagcatcagaatttggaaaccattacttatatcag
attgcacatcttggagatgatgatgaagaacctgagttttcatctgccatgcctctggaa
gaaggagacacattcttctttcagccaagaccactcaaaaaccttgttttggtcgatgag
ttggacagcctctctcccattttgttttgccagatagctgatctggccaatgaagacact
ccacagctctatgtggcctgcggtaggggaccccggtcatctctgagagtcttaaggcat
ggacttgaggtatcagaaatggctgtttcagagctacctggtaaccccaatgctgtctgg
acagtgcgtcggcacattgaagatgagtttgatgcctacatcattgtgtctttcgtgaat
gccacacttgtgttgtccattggagaaactgtggaagaagtgactgactctgggtttctg
ggcactaccccaaccttgtcgtgttccttgttaggagatgatgccttggtgcaggtgtat
cctgatggcattcggcacatacgagcagacaagagagtcaacgagtggaagactcctgga
aagaaaacaattgtaaaatgtgcagtgaaccagcgacaggtggtgattgccctgacggga
ggagagctggtctattttgagatggatccctcaggacagttgaacgagtacacagagcga
aaggagatgtctgcagatgtggtgtgcatgagtctggccaatgtgccccctggagagcag
cggtcccgcttcttggctgtagggctcgtggacaacactgtcagaatcatctccctggac
ccctcagactgtttgcaacctctgagcatgcaggctctcccagcccagcctgagtcctta
tgtattgtggaaatgggtgggactgagaagcaggatgagctgggtgagaggggctctatt
ggattcttatacctgaatattgggctgcagaatggcgtgctgctgagaactgtcctggac
cctgtcactggggatctgtctgacacccgcactaggtacctggggtcccgtcctgtgaaa
ctctttcgtgtccggatgcaaggccaggaggcagtgttggccatgtcaagccgctcatgg
ttgagctattcttaccaatctcgtttccatctcacccccctgtcttatgagaccctggaa
tttgcatctggcttcgcctctgaacagtgccctgagggcattgtggccatctccaccaat
accctgagaattttggcattagagaagctgggtgctgtcttcaatcaagtagcctttcca
ctgcagtacacacccaggaaatttgtcatccatcctgaaagtaacaacctaatcatcatt
gagactgaccacaatgcttacactgaggccacaaaagctcagaggaagcagcagatggca
gaggaaatggtggaagcagcaggggaggatgagcgggagctggccgcagagatggcagca
gcgttcctcaatgaaaacctccctgagtccattttcggagctcctaaggctggcaatggc
cagtgggcctctgtgatccgagtgatgaatcctattcagggaaacacactagaccttgtt
cagttggaacagaatgaagctgcttttagtgtggctgtgtgcaggttctccaacactggt
gatgattggtatgtgctggtgggcgtggccaaagacctaatactgaacccccgatctgta
gcagggggctttgtctatacctacaagctcgtgaacaatggggaaaaactggagtttttg
cacaagactccagtggaagaggttcctgctgccattgccccattccaggggagggtgttg
attggtgtgggaaaacttttgcgagtctatgacctaggaaagaagaagttactccgaaag
tgtgagaataagcatattgccaattacatttctggcatccagactattggacatagggta
attgtatctgatgtccaagaaagtttcatctgggttcgctacaagcgtaatgagaaccag
ctcatcatctttgctgatgatacctaccctcgatgggtcacaacagctagcctcctcgac
tatgatactgttgctggggcagacaagtttggcaacatttgtgtggtgagactcccacct
aataccaatgatgaagtagatgaggatcccactggaaataaagctctctgggaccggggc
ttgctcaatggggcctctcagaaggctgaagtgatcatgaattaccacgtgggcgagaca
gtactttcgttacagaagactacgttgatccctggaggctcagaatcgcttgtctatacc
actttgtcaggaggaattggcatccttgtcccgttcacatcccatgaggatcatgacttt
ttccagcatgtggaaatgcacctccgatctgagcatccccctctctgtgggcgagaccac
ctcagttttcgttcctattactttcctgttaagaatgtgattgatggagacctctgtgag
cagttcaactccatggagcccaacaaacaaaagaatgtctctgaagaactggaccgaacc
ccacctgaggtgtccaagaagcttgaggacatccggactcgctatgccttctga
DBGET
integrated database retrieval system
