Sus scrofa (pig): 100512874
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Entry
100512874 CDS
T01009
Symbol
SCAF8
Name
(RefSeq) protein SCAF8 isoform X5
KO
K13191
RNA-binding protein 16
Organism
ssc
Sus scrofa (pig)
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ssc03021
]
100512874 (SCAF8)
03041 Spliceosome [BR:
ssc03041
]
100512874 (SCAF8)
Transcription machinery [BR:
ssc03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
100512874 (SCAF8)
Spliceosome [BR:
ssc03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
100512874 (SCAF8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
RRM_1
Transformer
DUF3525
RRM_occluded
DAXX_hist_bd
Motif
Other DBs
NCBI-GeneID:
100512874
NCBI-ProteinID:
XP_013840156
Ensembl:
ENSSSCG00000004070
UniProt:
A0A4X1VRT1
LinkDB
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Position
1:complement(11888108..12122435)
Genome browser
AA seq
1265 aa
AA seq
DB search
MDTRSILYSLNDYKPPISKAKMTQITKAAIKAIKFYKHVVQSVEKFIQKCKPEYKVPGLY
VIDSIVRQSRHQFGQEKDVFAPRFSNNIISTFQNLYRCPGDDKSKIVRVLNLWQKNNVFK
SEIIQPLLDMAAGIPPPVVTPVLASTTAAMSNTPGTPVTPVTPANVVQGLPDPWVSQITN
TDTLAAVAQILQSPQGQQLQQLIQTLQIQQQKPQPSILQALDAGLVVQLQALTAQLTAAA
AAANTLNPLEQGVSFNKKLMDRFDFGEDSEHSEEPKKEIPTSQLSHVSESVNNSIFHQIA
EQLQQQNLEHLRQQLLEQQQPQKATPQDSQEGTFGSEHSASPSQGSSQQHFLEPEANLDD
SIDIQQQDMDIDEGQDGVEEESFEQEAKKVAVRSRSRTHSRSRSRSPRKRRSRSRSGSRK
RKHRKRSRSRSRERKRKSSRSYSSERRAREREKERQKKGLPPIRSKTLSVCSTTLWVGQV
DKKATQQDLTNLFEEFGQIESINMIPPRGCAYVCMVHRQDAFRALQKLSSGSYKIGSKVI
KIAWALNKGVKTEYKQFWDVDLGVTYIPWEKVKVDDLEGFAEGGMIDQETVNTEWETVKS
SEPVKETVQTTQSPPPVEKETVVTTQAEVFPPPVAMLQIPVAPAVPAVSLVPPAFPVSMP
VPPPGFSPIPPPPFLRASFNPSQPPPGFMPPPVPPPVVPPPTIPPVVPTSLVQPPLSMTP
ETVKDVGFGSLVLPGGSVASSLATSTLPAGSVFNPPTKQAEPEEKVPHLLDHQISSGENT
RSVIPNDISSNSAILGGQPPNVTSNSGILGVQRPNVSSNNEILGVRPSNVSSGSGIIGPQ
PPTILNNSGILGIQPPSVSSSSGLLGVLPPNIPNSSGLIGVQPPGVPNPGLLGTQPPAGP
QNLPPLNLSNQRMPAMPILDIRPGLIPQTPGPRFPLIQPGIPPQRGLPPPSVLDAALHPP
PRGPFPPGDIFSPPERPFLVPGRQSVDNVSNPEKRIPLGNDNIQQEGDRDYRFPPMETRE
TISRPPPVDVRDVVGRPVDPREGPGRPPLDGREHFGRPPVDIRENLVRPGIDHLGRRDHF
GFTPEKPWGHRDFDEREHRVLPVYAGPKGLHEERGRFRSGNYRFDPRSGPWNRGFGQEVH
RDFDDRRRPWERQRDRDDRDFDFCREMNGNRLGRDRIQNTWVPPPHARVFDFFEGATSQR
KGDNVPQVNGENTERHAQPPPLPAQSDPELYEKLTSSSEISKEKSDTVADIESEPVVEST
ETEGT
NT seq
3798 nt
NT seq
+upstream
nt +downstream
nt
atggacacaagaagcatattgtattccctgaatgactataagccacccatttctaaagca
aaaatgacccaaattactaaagcagccatcaaagctattaagttctataaacatgtggta
cagagtgttgagaaattcattcagaaatgtaaaccagaatacaaggtacctgggctttac
gttattgactccattgtacgacagtctcgacatcagtttggtcaagaaaaggatgtgttc
gcacccagatttagtaataacatcattagcactttccagaatttatatcgttgccctgga
gatgacaagagtaagatagtgagagtattaaacttatggcagaaaaataatgtatttaag
agcgagattattcaacctcttttggacatggcagcgggcattccccccccagttgtcaca
cctgtgctggccagtactactgctgccatgagcaacaccccaggaactcctgtgacacct
gttactccagccaatgtggtccaaggtttacctgatccgtgggtatctcagataacaaat
acagatacacttgcagctgtagctcagatcttacagagtcctcaaggccaacagcttcag
cagttaatacagactttacagatacaacagcagaagcctcagccttccatcctgcaagcc
ctggatgctggtcttgtggtccagctgcaggctcttacagcacagcttacggcagcagct
gcagcagccaacactcttaatcccttagaacagggcgtgtcttttaacaagaagttgatg
gataggtttgattttggggaagattctgagcatagtgaagaacccaaaaaggaaattcca
acttctcaactttctcatgtttcagaatctgtgaacaattccatttttcatcagatagca
gaacagctacagcagcaaaaccttgaacatctaagacagcaacttctggaacaacaacag
cctcaaaaggcaactcctcaggatagtcaagaaggaacatttgggtcggagcattctgcg
tcaccatcacaaggaagcagtcagcagcatttccttgaacctgaagcaaatttagatgat
tccatagatattcagcaacaggatatggatatagatgaagggcaagatggagtggaagag
gagagcttcgaacaagaagcaaagaaggtggctgttcgttcaagatcaagaacacattca
cgatctcgttcaagatcaccaagaaaacgaaggtctaggtcgcgatctggttctcgaaag
cggaaacacagaaagcgatcgcgctcccgttctagagaaagaaagaggaaatcgtcacgt
tcatactccagtgaaagaagagctagagaaagggagaaggaacggcagaaaaaggggtta
ccgccaattcggtccaaaacattaagtgtgtgcagtactactctgtgggttggtcaggta
gacaagaaggcaacacagcaggacttaactaacctgtttgaagagtttggacagatcgaa
tccattaatatgattcctcccaggggctgtgcttatgtctgcatggttcatcgacaagat
gcatttcgggctcttcagaaactcagttccggatcgtataaaattggctccaaggtcatt
aagatcgcttgggctttaaacaaaggtgtaaaaacagaatacaaacaattctgggatgtg
gatcttggagttacgtatataccatgggaaaaagttaaagtggatgacttggaaggtttt
gcagaaggaggcatgattgatcaggaaactgtaaatactgagtgggaaactgtgaaaagc
tcagaaccggttaaagagacggtccagacgactcagagcccccctccagttgaaaaggaa
acagtggtcacgacccaggcagaggttttccctccgcctgttgctatgttacagattcca
gtagctccagcagtgcctgcagttagtttagtcccaccagcatttcctgtgtcaatgcca
gttcctcctcctggattcagtccaattcctccacctccttttctccgagcaagttttaac
ccttcacaaccacctcctggtttcatgccacctccagttccaccacctgttgtaccacca
cctactatcccaccagtagtaccaacatctttagtgcagccaccattatctatgactcca
gaaactgtgaaagatgttggatttggtagccttgttttaccaggtggttctgttgccagc
agtcttgctacttccactctgccagccggaagtgtttttaatcctccaactaaacaagca
gagcctgaagaaaaagtacctcatcttttagaccaccagatttcttctggtgaaaacacc
agatcagtgattccaaatgatatttcaagcaactctgcaattttaggaggacagccgcca
aatgtgacaagcaattctgggattctgggagtccaaagaccaaatgtatcaagtaataat
gaaatccttggagtccggccgtctaatgtttccagtggttctgggattattggaccccag
ccaccaactattctaaataactctggaattttgggaatacagccaccaagtgtgtcgagt
agttctggacttttgggggtgcttcccccaaatatacctaacagttctggactcatagga
gtacagccacccggggttccaaatcctggactgttgggaacacagccaccagctgggcct
caaaatttgccccctttgaatctttctaatcaaaggatgcctgcaatgccaatcttagac
attcgtccaggactcataccacagactcctgggccacgattccctttaatacagcctgga
attccaccccagcggggactccctcccccatcagtacttgatgcagctcttcatccacca
ccccgtggtccttttcctccaggggatatttttagtccacctgaaagaccttttctggtt
cccggaagacaaagtgtagacaatgtcagtaatccagaaaaaaggataccgcttggaaat
gataatattcaacaggaaggagatagagattaccggtttcctcccatggaaaccagggaa
accatcagtaggccgcccccggtggatgttagggatgtggttggacggcctgtagatccg
agagaaggtcctggaaggcctccgttagatggtagagagcattttggaagacctcctgta
gatattagagagaatcttgtgaggccaggcatagatcatcttggtcggagagaccacttt
ggctttactccagagaagccgtgggggcatagagatttcgacgagagagagcatcgggtt
ctgcctgtctatgcggggccgaaaggcttacatgaagaaagagggagatttcggtctgga
aactatcggtttgatcctagaagtggtccttggaacagaggatttggacaagaggttcac
agagattttgatgaccgcagaagaccctgggagaggcaaagggacagggacgacagagat
tttgatttctgcagagaaatgaatggaaatcggcttggacgagatagaattcagaacacc
tgggtccccccacctcatgctcgggtttttgatttttttgaaggggccacttcgcaacga
aaaggtgataatgtgcctcaggttaatggtgaaaataccgagagacatgctcagccacca
cctttaccagcacagagcgatcctgaactttatgaaaaactgacatcttcaagtgaaata
agcaaggagaagagtgacacagttgctgatatagaaagtgaaccagtggtagaaagcaca
gaaactgaggggacataa
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integrated database retrieval system
