Sus scrofa (pig): 100513148
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Entry
100513148 CDS
T01009
Symbol
RAD54B
Name
(RefSeq) LOW QUALITY PROTEIN: DNA repair and recombination protein RAD54B
KO
K10877
DNA repair and recombination protein RAD54B [EC:5.6.2.-]
Organism
ssc
Sus scrofa (pig)
Pathway
ssc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
100513148 (RAD54B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ssc03400
]
100513148 (RAD54B)
DNA repair and recombination proteins [BR:
ssc03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
100513148 (RAD54B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
HDA2-3
AAA_22
RE_HaeII
AAA_34
Motif
Other DBs
NCBI-GeneID:
100513148
NCBI-ProteinID:
XP_020944760
Ensembl:
ENSSSCG00000006101
LinkDB
All DBs
Position
4:42249482..42369408
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AA seq
907 aa
AA seq
DB search
MRRSAAPSQLQGNPLKKPRFIPPARSDPGLNEEVXKLNSDVKLFEVPANKNAFLQSQNDP
RICSFNLPPEESAREINREDNYREKYHLEASAKTTLDPHHTAHSAPKEVMVSNGQEEEPD
SLVKYFSVVWCKASKKKHKKWEGDAVLIVKGKSFALKDLEGKDIGRGIGYKFKELEKIEE
GQTMMIGGKEIEVMGVISPDDFSSGRCFQLGLSGALNSSQTPKKCTSNPFKSVCKLSSKE
NRQNGFQNCKPRHDPYAPNSLVMLRPDNNHQWMFNKNHFPIVDVVIDPHLVYHLRPHQRE
GIIFLYECVMGMRVNGRCGAILADEMGLGKTLQCISLIWTLQCQGPYGGKPVIKKTLIVT
PGSLVNNWRKEFQKWLGSERIKIFTVDPDHKVEEFTKSPLYSVLIISYEMLLRSLDQIKN
IKFDLLICDEGHRLKNSAIKTTTALFSLPCEKRIILTGTPVQNDLQEFFSLIDFVNPGIL
GSLSCYRKIYEEPIITSRQPSASQEEKELGERRACELTCLTGLFILRRTQEVINKYLPPK
IENVVFCRPGALQIELYRKLLNSQAVRFCLQGLMENSSHLICIGALKKLCNHPCLLFSSV
KEKECSSAWDENEERRLYEDLLKVFPPDYNPLMFAEEESGKLQVLSKLLAVIHELRPAEK
VVLVSNYTQTLNILQEVCRRHGYGCTRLDGQTPISQRQQIVDGFNSKYSSDFIFLLSSKA
GGVGLNLIGGSHLILYDIDWNPATDIQAMSRVWRDGQKHPVHIYRLLTTGTIEEKIYQRQ
ISKQDLSGAVVDLTKTSDHIQFSVEELKNLFTLHENSHCVTHDLLDCECTGENHPGDSLE
KFPLSRTCQLGPHQQKSNSLKPLSMSQLKQWKHFSGDHLNLSDPFLERIRGNVSFFFQNI
TNQTTAT
NT seq
2724 nt
NT seq
+upstream
nt +downstream
nt
atgagacgatctgcagcaccaagtcagttgcaagggaatcctttaaaaaaaccaagattt
ataccaccagcaagaagtgatccaggtctgaatgaagaggtanaaaagctgaattcagat
gtaaaattatttgaggttcctgcaaataagaatgcatttctccagtcacaaaatgatccc
agaatatgcagttttaatctgcctcctgaagaaagcgctagagaaattaatcgtgaggat
aattacagggaaaaatatcatttggaagcttctgcaaagacaacattagatccacatcat
acagctcattcagcccctaaagaagtaatggtgtctaatggacaagaagaggaacctgat
agcctggttaaatatttcagtgttgtttggtgtaaggcttcaaagaaaaaacacaaaaag
tgggaaggtgatgctgttcttattgtaaaaggaaagtcatttgcattaaaggatttggaa
ggcaaagacattggaagaggcattggatataaatttaaagaacttgaaaagattgaagag
ggtcaaacaatgatgattggtggaaaagaaatagaagtcatgggtgtaatctctccagat
gatttcagcagtggcagatgttttcagcttggactttctggggccttaaattcttctcaa
actcccaagaagtgtacctctaacccttttaaaagtgtctgtaaactaagttcaaaggaa
aatagacagaatggcttccagaattgcaaaccacgtcatgatccatatgcaccaaattcc
cttgttatgctacgaccagataataatcaccagtggatgttcaataagaaccattttcct
attgtggatgtagtaatagatcctcaccttgtgtatcaccttcgaccacatcagagagaa
ggaatcatattcctttatgaatgtgtgatgggaatgagggtgaacggcagatgtggagct
attcttgctgatgaaatgggtttagggaaaacattgcaatgtatttcactcatctggact
ctacagtgtcagggaccctatggcgggaagccagtaataaagaagacacttattgttaca
cctggaagcttggtgaataattggaggaaagaatttcaaaaatggttaggaagtgaaaga
atcaagatatttactgttgatccggaccacaaagtagaagaattcaccaaatcacctttg
tattctgttcttatcatcagttatgaaatgttacttcgatccctggatcaaattaagaat
ataaaatttgatcttctaatttgtgacgaagggcatcgtttgaagaacagtgccattaag
acaactacagccctctttagcctcccttgtgagaaaaggataattctaactggtactcca
gttcagaatgatctccaagaatttttttcattaattgattttgtaaatccaggaatatta
ggttctttgtcatgttatagaaaaatatatgaagaacccatcattacatcaagacaacct
tctgcttctcaggaagaaaaggagttaggagagagaagagcatgtgaacttacgtgcctc
actgggctctttatcctcagaagaacccaagaagtcataaataaatatcttccacctaaa
atagagaatgttgtcttttgccgaccaggagcactacagattgaactgtatcgaaagctg
ttgaattctcaggctgtcagattctgtcttcaaggactgatggaaaatagttctcatcta
atatgtattggagctcttaaaaaactgtgcaatcacccctgccttttgttcagctcagta
aaagaaaaagagtgcagttcagcttgggatgagaatgaagaaagaagactgtatgaagac
ttgctaaaggtgttcccccctgattacaacccgctcatgtttgctgaggaagagtcagga
aaactgcaggtgctgtccaagctcttagctgttatccatgaacttcgtcctgccgaaaag
gtggtgttggtatccaactatacacaaaccttgaatattttacaagaagtgtgcaggcgt
catggatatggctgtacaagactcgatggacaaacaccgatctctcaaaggcagcagatt
gttgatggctttaatagtaaatactcttctgattttatttttttgttaagttccaaagct
ggtggtgtgggacttaaccttattggaggatctcacttaattctctatgacattgattgg
aatccagccactgatatccaggcaatgtctagagtatggagagatggtcagaaacatccc
gtacatatttatagactcctaaccacaggaacaatagaagaaaagatctatcaaaggcag
atcagtaagcaagatctttctggggcagttgtggacctaaccaagacatcggatcatatt
cagttttcagttgaggaacttaaaaatttgttcacattacacgaaaattcacattgtgtt
actcacgacctgcttgactgtgaatgtacaggagaaaaccatccaggtgattcattggaa
aaattccctctctctagaacttgtcaacttggtccacatcaacagaagtctaactccctg
aaacctctctccatgtcacagctgaagcagtggaaacatttttctggagatcatttaaat
ctttcagatccttttcttgaaagaataagagggaatgtgtcattcttttttcagaatata
accaatcaaacaactgctacataa
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