KEGG   Sus scrofa (pig): 100513727
Entry
100513727         CDS       T01009                                 
Symbol
IFT140
Name
(RefSeq) intraflagellar transport protein 140 homolog isoform X1
  KO
K19672  intraflagellar transport protein 140
Organism
ssc  Sus scrofa (pig)
Brite
KEGG Orthology (KO) [BR:ssc00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   03037 Cilium and associated proteins [BR:ssc03037]
    100513727 (IFT140)
Cilium and associated proteins [BR:ssc03037]
 Primary cilia and associated proteins
  Intraflagellar transport (IFT) complex A
   100513727 (IFT140)
SSDB
Motif
Pfam: TPR_IF140-IFT172 Beta-prop_IFT140_1st Beta-prop_IFT140_2nd TPR_IF140_C WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_EML_2 Beta-prop_WDR19_1st ANAPC4_WD40 WD40_Prp19 Beta-prop_RIG_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_HPS5 WD40 TPR_IFT80_172 TPR_GEMI5 Beta-prop_EML Beta-prop_CAF1B_HIR1 TPR_COPA_B Clathrin tRNA_int_end_N2 WDR55 WD40_MABP1-WDR62_1st Beta-prop_WDR75_1st
Other DBs
NCBI-GeneID: 100513727
NCBI-ProteinID: XP_020942499
Ensembl: ENSSSCG00000008020
LinkDB
Position
3:40309298..40372139
AA seq 1452 aa
MLLYFDHRVEAPDAAGSPSHVCWHPVHPFLAVASVNPALGGSVDIYLEQGECVPNTHMER
ASRVTILSWHPTRPVLAVGWETGEAVIFNKQDKEQHAVPPTHTADLTVLTWSPSGNYLAS
GDRLGVLILWRLDQRGRVQGAPLLKHDYGQPLTHCIFRRPPPGEDLVQLAKAAVSGDEKA
LDMFNWSKSGLGSVLKMGSQEGLSFFVSLTDGTVHHVDEEGKTAWAVATDSCVQALFYVD
KRQALVAVTESLLLCLFTVTPEGEAAEVLKVKLSGKTGRRADVALIEGSLLVSATGEAVL
RFWDLDRGENYLLSPEEKFGFEKGENINCVSYCEVKGLLAAGTDRGRVATWRKVPSAPSG
HGLEGKDRWTLHAPAELPGSITQIKWGSRKSLLAVTSSSSVVVLREQAVSSHFHQQVAVV
QVSPRLLSVSCLSAGTTHYLHTDMHVSGVFATKDAVAVWNGKQVVIFEASGAVFRSAGSF
LCESPVLAMHEESVYTVEPNRVQVRTWQGTVKQLLLFSETEGNPCFLDVCGNFLVVGTDL
AHFKSFDLSRREAKLHCCGKSLAELVPGAGGMVSLRCSASGSKISILLSKADHSPDSKIC
FYDVDTDTVSVLDLKTGQADGIEASTGQETKSQALGDERLTDLVPVSHFWDQSEPRLFVC
EAVREAPDADRRAPAERPPADVLVLAFFVTEEHGFLLQESFPRPPAFQTLLGVQVPYYYF
TRKPGEADRETRVDGGSQPGPQMVGRWPLRDFVGLEDCDKATRDAMLNFSVFLTVGDMDE
AFRSIRLIKSEAVWENMARMCVKTQRLDVAKVCLGHMGHARGARALREAEREPELEARVA
VLAIQLGMLEEAEQLYKKCGRYDLLNRLLQASGQWQRAIEVAERHDRVHLRTTYYNYARH
LEANADYSLALSYYEKSDTHRFEVPRMLAEDLQFLERYVNTMKDRTLWRWWAQYLESQAE
MDAALHYYGLAQDYFSLVRIHCFQGNIQKAAEIASETGNWAASYHLARQYESQEEVGQAV
HFYTRAQAFNNAIRLCKEHGLDDQLMNLALLSSPEDMIEAARYYEEKGEQADRAVVLYHK
AGHLSKALELAFATQQFVALQLVAEDLDEKSDPALLTRCSDFFLEHQQYEKAVELLLAAR
KYQEALQLCLEQNLTITEEMAEKMTVAKDCADLSEESRRELLEQVASCCMRQGSYHLAAK
KYTQAGDRLKAMRALLKSGDTEKIVFFAGVSRQKEVYVMAANYLQSLDWRRDPEIMKNII
SFYTRGRAPELLAGFYDACAQVEVDEYQNYDKAHGALTEAYKCLAKAKARSPLDHEARLA
QLQSRMTLVKRFMQARRMYAEDPEEALRQGQLLLEELGPDSTVRLGDVCGFLVEGHVQAG
DLRTRCGRLFMLSVRPSVCLSLWRNLVLFHLDPPIPDGRPLPSAFLASHRLRCHHRLRPR
HGPHQQFPLRPP
NT seq 4359 nt   +upstreamnt  +downstreamnt
atgctgctctactttgaccaccgcgtggaagccccggacgcggcggggtccccctcccat
gtctgctggcaccccgttcatccgttcctggctgtggcttccgtcaacccagccttagga
ggcagtgtggacatatacctggagcagggtgagtgcgtgcccaacacgcacatggagcgg
gcgtcccgagtcaccatcctgagctggcacccgacacggccggtcctggctgtcggctgg
gagacaggggaggcggtgatcttcaacaagcaggacaaggagcagcacgcagtccccccg
acgcacaccgccgacctcaccgtcctcacctggagccccagcgggaactacctggcctcg
ggggacaggcttggagtcctgatcttgtggcggctggaccaaaggggtcgggtccaagga
gcgcccctgctgaagcacgactacggccaacccctcacgcactgcatcttccggcgcccc
ccgcctggcgaggatctcgttcagttggcgaaggcggccgtgagtggtgacgagaaagcc
ctggacatgttcaattggagcaagagcggccttggaagcgtcttaaaaatggggtctcag
gaaggcctgtccttctttgtcagcttgacggatgggaccgtgcaccacgtggacgaggaa
ggcaagacggcctgggcggtggccacggacagctgcgtccaggcgctcttctacgtggac
aagaggcaggcactggtggctgtcaccgagagcctactgctctgcctgttcacggtgact
cccgagggtgaggccgccgaggtgctgaaggtgaagctgagcgggaagacgggtcgccgg
gcagacgtggctctgattgaaggcagccttcttgtgagcgccacgggggaggcggtgctc
aggttctgggacttagaccgaggagagaattacctgctgagtccagaggagaagtttggt
tttgaaaaaggcgagaacataaactgtgtttcttactgtgaagtcaaaggtcttctggcg
gcggggaccgacagagggcgggtagccacgtggaggaaggtgccaagcgccccgagcggc
cacgggctggagggcaaggacaggtggacccttcacgcgcctgctgagctccccggaagc
atcacccagataaagtgggggtccaggaagagccttctggccgtgaccagcagcagctcc
gtcgtggtcctccgcgagcaggccgtgtcctcgcacttccaccagcaggtggccgtggtg
caggtctccccacgcctgctcagcgtgtcctgcctgtcagcggggacgacgcactatctg
cacaccgacatgcacgtcagcggggtgtttgccaccaaggatgctgttgccgtctggaac
gggaagcaggtggtgatctttgaggcttccggggccgtgttccggagtgcaggttccttt
ctgtgtgagtctccagtgttagccatgcatgaagaaagcgtttatacagtggagccaaac
cgagtccaagttcgaacctggcaggggaccgtgaaacagctgctgctcttctccgagacg
gaggggaacccgtgcttcctggacgtctgcggaaatttcctggttgtggggacggacctg
gctcactttaaaagctttgatctttcccgaagagaggcgaagttgcactgctgcggcaag
agcctggccgagctggtgccaggtgcggggggcatggtctcgctcaggtgcagcgccagt
ggcagcaagatcagcatcctcctcagcaaggctgaccacagccccgattccaaaatctgc
ttctatgacgtggacacggacacggtgagcgtcctcgacctcaagacgggccaggctgac
gggattgaggcctcgactgggcaggaaacgaagagccaggccctgggggacgagaggctg
acggatcttgtgcccgtgagccacttctgggaccagagcgagcccaggctgttcgtgtgt
gaggccgtgcgggaggcaccagacgccgacaggagggccccggccgagcgccccccggcg
gatgtgttggtcctggccttcttcgtgaccgaagagcacggcttcctgttgcaggagagc
ttcccccggcctcctgccttccagacgctcctgggggtccaggtgccctattactacttc
acgagaaagccgggagaagccgaccgagagacccgggtggacggcgggtcccagcctggc
ccccaaatggtgggcaggtggcccctgcgggacttcgtggggctggaggactgtgacaag
gccacacgggatgccatgctcaatttcagcgtcttcctcaccgtcggggacatggatgaa
gccttccggtccatcaggctcatcaaaagcgaggccgtctgggagaacatggcgcgcatg
tgcgtgaagacccagaggctggacgtcgccaaggtgtgcctggggcacatgggccacgca
cgcggagcccgggcgctgcgggaggccgagcgggagccggagctggaagcccgggtggcc
gtgctggccatacagctgggcatgctggaggaggcggagcagctgtacaagaaatgcggg
cgctatgacctcctcaaccgactcctccaggcctctggccagtggcagagagccatcgag
gtggctgagcgccacgaccgcgtgcacctgcgcaccacctactacaactatgcccggcac
ctggaagccaacgccgactacagcctggccctcagctactacgagaagtcagacacgcac
cgcttcgaggtgccgcggatgctggcggaggacctgcagttcctggagcgctacgtcaac
acgatgaaggacaggaccctctggaggtggtgggcccagtacctggagagccaggctgag
atggacgccgcgctgcactactatgggctggcgcaggactacttctccctggtccgcatt
cactgcttccagggcaacatccagaaggctgctgagatagccagcgagaccggcaactgg
gcggcctcgtaccacctggcccggcaatacgagagccaggaggaggtggggcaggctgtg
cacttctacacgcgcgcacaggccttcaacaacgccatccgcctgtgcaaggagcatggc
ctggacgaccagctcatgaacttggccctgctgagctcccctgaggacatgatcgaggcg
gcgcgctactacgaggaaaagggcgagcaggcggaccgggcggtcgtgctgtaccacaag
gccggccacctctccaaggccctggagctggccttcgccacgcagcagtttgtggccctg
cagctcgtggccgaggacctggatgagaagtcagaccccgctctcctgacccgctgctct
gacttcttcctggagcaccagcagtacgagaaggcggtggagctgctgctggctgccagg
aagtatcaggaagccctgcagctctgcctggagcagaacttgaccatcacagaggagatg
gcggagaagatgaccgtggccaaggactgcgcagacctgtcggaagagtcgcggcgtgag
ctgctggagcaggtggccagctgctgcatgcgccagggcagctaccacctggctgccaag
aagtacacgcaggctggcgaccggctcaaggccatgcgcgcgctgctcaagtctggggac
acggagaagatcgtgttctttgcgggcgtctcgaggcagaaggaggtttacgtgatggcc
gccaactacctgcagtccctggactggcggcgggaccccgagatcatgaagaacatcatc
agcttctacaccaggggccgcgcccccgagctcctggccggcttctacgacgcctgcgcc
caggtggaggtcgatgagtaccagaactacgacaaggcccacggggcgctgaccgaggcc
tacaagtgcctggccaaggccaaggcccggagccccctggaccacgaggcccggctggcg
cagctgcagagcaggatgacgctggtgaagcgcttcatgcaagcccgcaggatgtacgcc
gaggatcccgaggaggcactcaggcagggccagctgctcctggaggagctgggccccgac
agcacggttcgcctcggggacgtgtgcggcttcctggtggagggccacgtgcaggcgggg
gacctgcgcacgcgatgtgggcgtctcttcatgctttccgtccgtccgtccgtctgtcta
tctctttggaggaatctcgttctcttccacctcgatcctcccatacccgatggcagacct
ctcccatctgcatttctggcgtcacacagacttcgctgccaccacaggctccgcccccgg
cacggccctcaccagcagttcccgctgagaccaccgtga

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