Sus scrofa (pig): 100514515
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Entry
100514515 CDS
T01009
Name
(RefSeq) LOW QUALITY PROTEIN: protocadherin beta-5-like
KO
K16494
protocadherin beta
Organism
ssc
Sus scrofa (pig)
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ssc04515
]
100514515
Cell adhesion molecules [BR:
ssc04515
]
Cadherins
Protocadherins
100514515
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_C_2
Cadherin_CELSR2_9th
Cadherin_4
Motif
Other DBs
NCBI-GeneID:
100514515
NCBI-ProteinID:
XP_020940569
LinkDB
All DBs
Position
2:142853165..142858654
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AA seq
801 aa
AA seq
DB search
METVLVKTLQKRQVFFLVILLLLWEAGSEAIRYSMPEERESGSFVANLAKDLGLGVXALA
TRGARIHYKGNKQLLQLDVKTGDLLLSEKLDREGLCGATDPCILHFQLLLENPVQFFQAE
LELTDINDHSPEFPDREMLLKIPESVQPGAVFPLKTAQDLDIGNNTVQRYAVSPNSHFHV
VTHNRGDGRKFPELMLDKAVDREEQPELSLILTALDGGAPPRSGTTAVRIEVVDINDNAP
EFLQSLYEVQIPENSPLNTLVAAVSARDLDAGTYGNVAYALFQGDEVTQPFVIDELTGEI
RLQRALDFEETQKYNMEITATDGGGLSGKCTVAIEVEDVNDNAPELTMSTLASSTPENSP
ETVVAVFSVSDPDSGDNGRMVCSIQDDLPFLLKPTFKNFYTLVTERPLDREERAEYNITI
TVGDLGTPRRHTQHNLTVRVADVNDNAPAFSQPAYTLRVRENNSPALHIGTVRATDADAG
ANAQLTYSLLPPSDPHLPLASLVAINPDTGQLFALRALDYEXLRAFDFQVRAADRGAPAL
SSQARVRVLVADANDHAPVVLYPPPNASAPCTELLPRAAEPGYLLAKVVAVDGDAGQNAW
LSYRLLQATEPGLFGVGAHSGEVRTARPLSERDAPRQRLLLLVRDHGEPPLSASVPLHVL
LVDGFSQPYLPPPEAPGRAPGAGAGADEPLTVALVGALACVSALLVGALLALAAGRLCRR
GGAASAGGCAGPAEGGVPGQLLDVGGTGTLAHGYRYEVCLTEGSGLKEFKFLKPILPNLP
PQGAFEDMEGNATFRNSFGFN
NT seq
2406 nt
NT seq
+upstream
nt +downstream
nt
atggagactgtgctggtaaagacgctacagaaaaggcaagtattctttcttgttatattg
ttgcttttgtgggaggctggctctgaagcaatcaggtattctatgccagaagaaagagaa
agtggttcctttgtggccaacctggcaaaagacctggggctcggggtgngggcactagcc
acgcggggtgcgcgaatccattacaaaggaaacaaacagctcctgcagctcgatgtaaag
accggggatttgcttctatctgaaaaattagaccgagaggggctgtgtggggcgacagat
ccctgtatactgcatttccagctgttactggaaaacccggtgcagttttttcaggctgag
ctggagctcacagatataaatgaccattccccagaattcccagacagggaaatgctccta
aaaatcccagagagcgtccagccaggggctgtgttccctctgaaaacagctcaggacctt
gacatagggaacaacaccgttcagcgctacgcagtcagccccaactcccacttccatgtc
gtcactcataatcgcggagatggcagaaagttcccagagctgatgctggacaaagcagtt
gatcgggaggagcagcccgagctcagcttaatactcacggcgctggacggcggggctccg
cccaggtccgggaccacggcagtccgcattgaagtcgtggacatcaatgacaacgcccct
gagtttttacagtcgctctacgaggtgcagatcccagagaacagccccctaaacacctta
gttgctgcggtctctgcccgagatttagatgcaggaacatatgggaatgtagcctacgct
ctcttccaaggggatgaagtgactcaaccatttgtaattgacgaactaactggagagatt
cgtctgcagagagcactggattttgaggaaactcaaaagtataacatggaaattacagcc
acagacggcgggggcctttcaggaaaatgcactgtagctatagaggtggaggatgtgaac
gacaacgcccccgaactgaccatgtccacgctggccagctctacccccgaaaactccccg
gagacggtggtggccgttttcagtgtttctgacccagactccggagacaacggtagaatg
gtttgctccatccaggatgatctcccctttctcttgaaacccacgttcaaaaacttctac
accctagtaacagagaggccgctggaccgagaggaaagagccgagtacaacatcaccatc
accgtcggcgacctggggaccccccggcggcacacccagcacaacctgaccgtgcgcgtg
gccgacgtcaacgacaacgcgcccgccttcagccagcccgcctacaccctgcgggtccgc
gagaacaacagccccgccctgcacatcggcaccgtccgcgccaccgacgccgacgcgggc
gccaacgcccagctcacctactcgctgctgccgccctccgacccgcacctgcccctcgcc
tcgctcgtggccatcaaccccgacaccggccagctcttcgccctgcgcgccctcgactac
gagnccctgcgcgccttcgacttccaggtgcgcgccgccgaccgcggcgcgcccgcgctc
agcagccaggcgcgggtgcgcgtgctcgtggccgacgccaacgaccacgcgcccgtcgtg
ctctacccgccgcccaacgcctcggcgccctgcaccgagctgctgccccgggcggccgag
ccgggctacctgctcgccaaggtggtggcggtggacggcgacgcgggccagaacgcctgg
ctgtcctaccggctgctgcaggccaccgagcccgggctcttcggcgtgggcgcgcacagc
ggcgaggtgcgcacggcccggccgctgagcgagcgcgacgcgccccggcagcggctgctg
ctgctggtgcgggaccacggcgagccgccgctctcggccagcgtcccgctgcacgtgctg
ctggtggacggcttctcgcagccctacctgccgccgcccgaggcccccggccgggcgccg
ggcgccggcgccggcgcggacgagccgctcaccgtcgccctggtgggggcgctggcgtgc
gtgtcggcgctgctggtgggggcgctgctggccttggcggcggggcggctgtgccggcgg
ggcggggcggcctcggcggggggctgcgcggggcccgcggagggcggcgtcccgggccag
ctgctggacgtgggcggcacgggcaccctggcccacggctaccgctacgaggtgtgtctg
acagaagggtctggattaaaagagtttaaattccttaagccgattctccccaaccttccg
ccccaaggcgcatttgaagatatggagggaaatgccaccttccggaatagctttggattt
aattag
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