Sus scrofa (pig): 100514819
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Entry
100514819 CDS
T01009
Symbol
PATL1
Name
(RefSeq) protein PAT1 homolog 1 isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
ssc
Sus scrofa (pig)
Pathway
ssc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100514819 (PATL1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssc03019
]
100514819 (PATL1)
Messenger RNA biogenesis [BR:
ssc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
100514819 (PATL1)
mRNA degradation factors
5'-3' decay
Decapping complex
100514819 (PATL1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
100514819
NCBI-ProteinID:
XP_020938650
Ensembl:
ENSSSCG00000013124
UniProt:
A0A8D0YAJ6
LinkDB
All DBs
Position
2:11826816..11857699
Genome browser
AA seq
786 aa
AA seq
DB search
MEKNAICTKSHNEAIVLIGKSLEDCPLDEDEDAFQGLGEEDEEIDQFNDDTFGSGAVDDD
WQEAHERLAELEEKLPAAVNEQTGNGERDEMDLLGDHEENLAERLSKMVIENELEDPAIM
RAVQTRPVLQPQPGSLNSSIWDGSEVLRRIRGPLLGQEMPTVSVLEYALPQRPPQGPEDD
RDVSERALPRRSTSPIIGSPPVRAVPIGTPPKQMAVPSFNQQILCPKPVHVRPPIPPRYP
APYGERMSPNQLCSVPNSSLLGHPFPPSVPPVLSPLQRAQLLGGAQLQPGRMSPSQFARV
PGFVGSPLAAMNPKLLQGRVGQMLPPAPGFRAFFSAPPPATPPPPQQHPPGPGPHLQNLR
SQAPMFRPDTTHLHPQHRRLLHQRQQQNRNQHRSLNGAGDRGSHRSSHQDHLRKDPYANL
MLQREKDWVSKIQMMQLQSTDPYLDDFYYQNYFEKLEKLSAAEEVQGDGPKKERTKLITP
QVAKLEHAYKPVQFEGSLGKLTVSSVNNPRKMIDAVVTSRSEDDETKEKQVRDKRRKTLV
IIEKTYSLLLDVEDYERRYLLSLEEDRPALMDERKHKICSMYDNLRGKLPGQERPSDDHF
VQIMCIRKGKRMVARILPFLSTEQAADILMTTARNLPFLIKKDAQDEVLPCLLSPFSLLL
YHLPSVTVTSLLQQLMNLPQSAAAPAPASPHLTAVLQNKFGLSLLLVILSRGEDLQSSDP
ASESTQNSQWTEVMFMATRELLRIPQAALAKPISIPTNLVSLFSRYVDRQKLNLLETKLQ
LVQGIR
NT seq
2361 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaaaatgccatctgtacaaaaagtcataatgaagctattgtgttgattgggaag
tctttggaggattgtcctctggatgaagatgaagatgcgtttcaggggctgggagaggaa
gatgaagagattgatcaattcaatgatgatacatttgggtcaggtgcagttgatgatgac
tggcaggaagcacatgagcgcctggctgaattggaagagaagctaccagcagcagttaat
gagcaaacaggcaatggagaaagagatgagatggacttgttgggtgaccatgaggagaat
ctggcagagaggctcagtaagatggtgattgaaaatgaactggaagatccagctatcatg
agggcagtacagaccaggccagtgttgcaacctcaaccaggaagtctcaattccagcatc
tgggatggatctgaagttctgaggcgaatccgaggaccactgcttggtcaggaaatgcct
acagtgtctgtattagagtatgccttgcctcagaggcccccacagggcccagaagatgat
cgggacgtttctgagcgtgcattaccaaggaggtcaacttcgcctatcattgggagtcct
cctgttagagctgtccccataggcaccccacctaagcagatggctgtacccagcttcaac
caacagattctgtgtccgaagcctgtccatgttcggcccccaataccaccacgttatcct
gctccctatggcgagaggatgtctccaaaccagctctgcagtgtcccgaattcttcccta
ctgggtcaccctttccctcctagtgttcctcctgttcttagccctctccagagagcacag
cttcttggaggagcacagctacagcctggacggatgtctcccagccagtttgcacgggtc
cctggatttgttggcagtccacttgctgccatgaatcccaagttgctgcaagggcgagtt
gggcagatgcttcccccagcaccaggcttccgtgccttctttagtgctccaccccccgct
acaccacctcctcctcagcagcacccccctggcccaggacctcacctgcaaaacctaaga
tctcaggccccaatgtttagaccagacacaactcaccttcatccacagcaccgtcgactc
ttacatcagaggcagcaacagaatagaaatcagcatcgcagtctcaatggtgcaggagat
agaggaagtcaccggagcagtcatcaagatcacctccgaaaggatccatatgccaatctc
atgttacagcgagagaaggattgggtctccaaaatccagatgatgcagctgcaaagcact
gacccctacctggatgatttttattaccagaattactttgaaaaactggagaaactctca
gctgctgaagaagtgcaaggtgatggccctaaaaaggagcgcaccaagctcattactcct
caggtggccaagctggagcatgcctataagccagtgcagtttgagggctctttgggaaag
ctaactgtctctagtgtgaataaccctcgaaaaatgattgatgctgttgtgacatctcgg
agtgaggatgatgagacaaaagaaaaacaggttcgggacaaaagacgaaaaacccttgtc
ataattgagaaaacctacagtttactccttgatgtggaggattatgaaaggcgttacctc
ctaagtctagaagaagatagacctgccctgatggatgagagaaagcacaaaatttgtagc
atgtatgacaacttaagggggaaattgcctggacaagagaggccaagcgatgaccacttt
gtacagatcatgtgtatccgaaaagggaagagaatggttgcccgtattcttcctttcctt
tccacagagcaagccgctgacattctcatgacaacagccaggaacctccctttccttatc
aagaaggatgcacaagatgaggtgctgccatgcttattgagtcccttctctctcctcctc
tatcatcttccatcagtgactgtcaccagccttctgcaacagctaatgaacctacctcag
agtgcagccgcgccagcacccgccagcccccacctcactgctgtgctccagaacaagttt
ggcctgtcactgctcctcgtcatcctgagccgtggggaggacctacagagttcagacccc
gcttcagaatccacgcaaaacagccagtggacggaggtgatgttcatggcaacccgagaa
cttctgcggattccccaggcagccctggccaagccgatctctatacccacaaacctagta
tccctcttttctcgttatgttgaccgacagaaactgaacttgctggagacaaaactgcag
ctagttcaggggatacggtaa
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