Sus scrofa (pig): 100514920
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Entry
100514920 CDS
T01009
Symbol
VPS8
Name
(RefSeq) vacuolar protein sorting-associated protein 8 homolog isoform X1
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
ssc
Sus scrofa (pig)
Pathway
ssc04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
100514920 (VPS8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ssc04131
]
100514920 (VPS8)
Membrane trafficking [BR:
ssc04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
100514920 (VPS8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_VPS8
TPR_Vps8
zf_RING_Vps8
VPS8_N
TPR_VPS8_2
TPR_Vps41
zf-RING_Vps41
WD40_CDC20-Fz
zf-RING_11
zf_RING_Vps8_fungal
Clathrin
zf-RING_2
zf-RING_5
zf-RING_UBOX
zf-C3H2C3
zf-C3HC4
EIF3I
PHD
Motif
Other DBs
NCBI-GeneID:
100514920
NCBI-ProteinID:
XP_020925632
Ensembl:
ENSSSCG00000011788
ENSSSCG00000021272
UniProt:
A0A480EW78
LinkDB
All DBs
Position
13:122693681..122953625
Genome browser
AA seq
1428 aa
AA seq
DB search
MENEPDHENVEQSFCAKTTDEELNKSFNLEASLSKFSYIDLDKELEFKNDLIDDKEFDIP
QVDTPPTLESILNETDDEDESFVLEDPTLLNIDTIDSHSYDTSSVASSDSGDRTNLKRKK
KLPDSFSLHGSVMRHSLLKGISAQIVSAADKVNAGLPTAIAVSSLIAVGTSHGLALIFGK
DQNQALRLCLGSTSVGGQYGAISALSINNDCSRLLCGFAKGQITMWDLASGKLLRSITDA
HPPGTAILHIKFTDDPTLAICNDSGGSVFELTFKRVMGVRTCESRCLFSGSKGEVCCIEP
LHSKPELKDHPITQFSLLAMASLTKILVIGLKPSLKVWMTFPYGRMDPSSVPLLAWHFVA
VHNYVNPMLAFCRGDVVHFLLVKRDESGAIHVTKQKHLHLYYDLINFTWINSRTIVLLDS
VEKLHVIDRQTQEELETVEISEVQLVYNSSHFKSLATGGNVSQALALVGEKACYQSISSY
GGQIFYLGTKSVYVMMLRSWRERVDHLLKQDCLTEALALAWSFHEGKAKAVVGLSGDATK
RKAIVADRMVEILFHYADRALKKCPDQGKIQVMEQHFQDMVPVIVDYCLLLQRKDLLFSQ
VYDKLSENSVAKGVFLECLEPYILSDKLVGITPQVMKDLLVHFQDKKLMENVEALIVHMD
ITSLDIQQMVLMCWENRLYDAMIYVYNRGMNEFISPMEKLFRVIAPPLNAGKTLTDEQVV
MGNKLLVYISCCLAGRAYPLGDIPEDLVPLVKNQVFEFLIRLHSTEASSEEEIYPYVRTL
LHFDTREFLNVLALTFEDFKNDKQAVEYQQRIVDILLKVMVENSDFTPSQVGCLFTFLAR
QLAKPDNTLFVNRTLFDQVLEFLCSPDDDSRHSERQQVLLELLQAGGIVQFEESRLIRMA
EKAEFYQICEFMYEREHQYDKIIDCYLRDPLREEEVFNYIHNILSIPGHSAEEKQSVWQK
AMDHIEELVSLKPCKAAELVATHFSEQIETVIKKLQNQVLLFKFLRSLLDPREGVHVNQE
LLQVSPCITEQYIELLCQFSPNQVIETLQVLECYRLDETIQISQKYQLHEVTAYLLEKKG
DIHGAFLIMLKRLQSKLQEIIHQDENAKDVPSLKDVEETMVETIALCQRNSHNLNQQQRE
ALWFPLLEAMMAPQKLSSSAAPHLHSEALKSLTMQVLNSMAAFIALPSILQRILQDPVYG
KGKLGEIQGLILGMLDTFNYEQTLLETTTSLLNQDLHWSLCNLRASVTRGLNPKQDYCSI
CLQQYKRRQEMADEIIVFSCGHLYHSFCLQNKECTVEIEGQTRWTCYKCSSSNKVGKLSE
NSSEIKKGRITPSQVKMSPSCHPSKGDPTVKKAISEPVLDPQQIQAFDQLCHLYRGSSRL
ALLTELSQNRSGESCRPFGGSQSGPAFNSIFQKENFQLQLIPPPVTED
NT seq
4287 nt
NT seq
+upstream
nt +downstream
nt
atggaaaatgaaccagaccatgaaaatgtggaacagagcttctgtgccaagactactgat
gaagaactgaataaatctttcaatctagaagcttcactttcaaaattctcctacatagat
ctggacaaggaactggagttcaaaaatgatctgattgatgataaggaatttgatattcct
caagttgatactcctccaacactggaaagcatactaaatgaaactgatgatgaagatgaa
tcttttgttcttgaagatcccacgttgttaaacattgatactattgattctcactcctat
gatacttcatctgtggcaagctccgatagtggtgacaggaccaacttaaaaagaaagaag
aaattacctgattctttttcactccatggatcagttatgcgacattcacttttgaaggga
atttctgcccagatagtgtctgcagctgacaaagtaaatgctggcttgcctacagcaatt
gcagtgtccagtctgatagcagtgggtacatctcatggattggctttaatatttggaaaa
gatcagaatcaagccttgcgactctgtctgggtagcaccagtgttggaggtcagtatgga
gccatctctgccctcagtatcaacaatgactgctcaagacttctctgtggctttgctaaa
ggacagatcactatgtgggatttggccagtggaaaacttctaagatcaataacagatgct
catcctccaggaacagcaatattgcatattaagtttacagatgatccaactcttgcaatt
tgcaacgacagcggaggttctgtttttgaattgacatttaagagagtgatgggagtgaga
acgtgtgaatctagatgcctgttcagtggttccaagggtgaagtttgctgtattgagcct
ctacattctaagcccgagttgaaagatcatcccatcacacagttttccttattggccatg
gcatccttaacaaagatactggtcattggattgaagccatccttaaaagtgtggatgact
tttccttatggacggatggatccttccagtgttccattgctggcctggcactttgtggca
gtgcataattatgtgaatcccatgcttgccttctgcagaggagatgttgttcattttcta
ttggttaagagagatgaatctggagcaatacatgttactaagcaaaagcatcttcaccta
tactatgacctcatcaactttacttggataaattcacgcacaattgtgctcttggacagt
gtagagaaattgcatgtgattgacaggcaaactcaagaggaattggaaacagtggagatc
tcagaagttcagttggtctataatagcagccattttaaatcactggccactggaggaaat
gtgagccaggcgctggctttggttggcgagaaggcttgctatcaatccataagtagctat
ggtggtcagatcttttatttggggacaaaatctgtttatgtgatgatgctgaggagctgg
agagagagagtggatcacctcctgaaacaagactgtctcacagaagccttggctcttgca
tggtctttccatgaaggaaaagcaaaagcagtagtgggattatcaggggatgctactaag
cgaaaggctattgttgcagatcggatggtagaaatcctattccattatgcagatcgagcc
ttaaaaaagtgcccagaccagggaaaaatccaagtgatggagcagcattttcaggatatg
gtgcctgtcatagttgattactgccttctgctacagcgaaaggatcttttatttagccag
gtgtatgacaaattaagtgagaattcagtggccaaaggagtgtttctggagtgccttgaa
ccatatatattaagtgataaattggtggggatcacaccccaggtaatgaaagatttgctt
gttcatttccaagataaaaagttaatggaaaatgtggaagccctcattgtacatatggat
atcaccagtctggatatacagcagatggttctcatgtgttgggagaatcggctctacgat
gctatgatctatgtctacaacagaggcatgaatgaattcataagtccaatggagaaactt
ttcagagtcattgctcctcctctgaatgcagggaagacgctaacagatgagcaagttgtt
atgggcaacaagcttcttgtatatattagctgttgcctagcaggtcgtgcctatcccctt
ggtgacatccctgaagatcttgttcccttggttaaaaaccaggtttttgaatttctaatt
cgcctgcattcaacagaagcttcctctgaggaagaaatctatccctatgttcgaactttg
ctacattttgacacaagagaatttctaaatgtattggcactgacttttgaagattttaaa
aatgataagcaagctgtagaatatcaacaacgtattgtggatattttgttgaaagttatg
gtggagaactcagattttactccttcacaagtagggtgtctctttaccttccttgcccgg
cagcttgcaaagcctgacaataccttatttgtaaaccgaaccctttttgatcaggtcctt
gaattcctctgtagtcctgacgatgactcccgacactctgaaagacagcaggtcctttta
gaattgctgcaggctggaggcatagttcaatttgaagagagtcggctcattcgtatggca
gaaaaagcagagttttatcaaatttgtgaatttatgtatgaacgagaacaccaatatgac
aaaattattgattgctacttacgtgacccactgagggaggaagaagtctttaactacatt
cacaatatcttgtccattcctggacacagtgcagaagagaagcagtctgtatggcagaaa
gcaatggatcatattgaggaacttgtgtccctgaagccctgtaaagctgcagagctggtt
gccactcacttttctgaacagattgaaacagtcattaaaaaacttcagaaccaggttttg
cttttcaaatttttgaggagtcttcttgacccaagggaaggcgttcatgtaaatcaagaa
ctgctgcaggtatctccctgtatcacagagcagtacattgaactcttgtgtcagttcagc
ccaaaccaggttatagagacgctgcaggtccttgagtgctaccgcctagatgaaactatt
cagatttcccagaaatatcagcttcatgaagtcactgcttatctattagaaaagaaaggt
gatattcatggtgccttcttaataatgctaaagagactacaaagcaaacttcaggagata
atccatcaagatgaaaatgccaaagatgttccctcattgaaggatgttgaagagaccatg
gtagagacaattgccctttgccaaaggaattcacataatttgaatcagcagcaaagagag
gcactgtggtttccattattagaagcaatgatggccccacagaagctgtctagttcagct
gcacctcatctacactctgaagctctgaaatctttgaccatgcaagttctaaatagcatg
gcggcatttattgcccttccatcaatcttgcaaagaatcttacaggatccagtttatgga
aaaggaaaacttggagaaatccagggacttattctgggaatgttggatacctttaactat
gaacagaccctgctggaaacaactaccagccttctaaaccaggatctccattggtcattg
tgtaacctgagagcgtcggtcaccagaggactgaatcccaagcaggattactgttctatt
tgtttgcagcagtacaagagacgccaggaaatggccgatgaaatcattgtctttagctgt
ggccatttgtatcactcattctgtctgcaaaacaaagagtgcactgtagaaattgagggt
caaacaagatggacatgctacaaatgcagctcaagtaacaaagtaggaaagttaagtgaa
aattcatctgaaattaaaaagggaaggataaccccatcacaggtaaaaatgtccccatcc
tgccatccatccaaaggggatcccaccgttaagaaggccatctcagaacctgttctggat
ccacagcaaatccaagcattcgatcagctttgtcatctctaccgaggaagttccaggctg
gctctccttacagagctctcccagaaccgcagcggcgagagctgcaggccgtttggtggc
tcccagagtggcccagccttcaacagcatcttccagaaggagaacttccagttgcagctc
attcctccgcctgtgaccgaggactga
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integrated database retrieval system
