Sus scrofa (pig): 100515017
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Entry
100515017 CDS
T01009
Symbol
TNRC18
Name
(RefSeq) LOW QUALITY PROTEIN: trinucleotide repeat-containing gene 18 protein
Organism
ssc
Sus scrofa (pig)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BAHCC1-like_Tudor
BAH
Tudor_3
DUF4537
Motif
Other DBs
NCBI-GeneID:
100515017
NCBI-ProteinID:
XP_020941700
LinkDB
All DBs
Position
3:complement(3901710..3996198)
Genome browser
AA seq
2964 aa
AA seq
DB search
MDGRDFGPPRSVHGPPPPLLSGLAMDSHRVGAATAGRLPASGLPGPLPPGKYMAGLNLHP
HPGEAFLGSFVASGMGPSASSHGSPVPLPSDLSFRSPTPSNLPMVQLWAAHAHEGFSHLP
SGLYPSYLHLNHLEPPSSGSPLLSQLGQPSIFDTQKDGFYLPAPGAPGALHSHTPSSRTP
GGHSSGASTKGSSREGPAKERAGRGGEPPPLFGKKDPRAREEAAGLRGVVDLTQEARAEG
RQDRGPPRLPERLSPFLAEPGPPRAPGTATTESKGKNLPPPPALSLCNGTADVGLPALVA
EAARGAKEAARQDESARLRRAAEALLPGPCPCPSPLPPPPPPSKGPPAPPAASGAFAASQ
PPAGVYTIFPAAAAREPGREHRVVAPTFVPSVEAFDERPGPIQIASQARDARAREREAGR
PGVLQAPPGSPRPPPDRPEGLREKNSVIRSLKRPPPAEAPAARAARASPDLRAYLPAKEL
LKPEAEPRPCERAPXGPAPPASQQAAKLFSLEPGRPPAPGGPEHKWKPFELGNFATTQMA
VLAAQHHHASRAEEEAAASKKAYLDPGGALPRAAATCARPGADMHAAAHGPGEASAMQSL
IKYSGSFAREAVAVRPGGCGKKSPFGGLGTMKPEPAPTTAPRAQARLPHPGGPAAPGGRQ
LKRDPERPESAKAFGREGSGAQGEAEVRHPPVGIAVAVARQKDSGGSGRLGPGLADQERS
LSLSSIKGHGRADEDCGDERARHREERLMGARLDRDQEKLLRESKELADLARLHPTSCAA
NGLNPNLMVTGGPALAGSGRWSADPAAHLATHPWLPRSGSTSMWLAGHPYGLAPPSLHQG
MAPAFPPGLGGSLPSAYQFVRDPQSGQLVVIPSDHLPHFAELMERAAVPPLWPALYPPGR
SSLHHAQQLQLFSQQHFLRQQEFLYLQQQAAQALELQRSAQLVQERLKAQEQRAEMEEKV
SKRSLEAAGKAGLSTTGPGLLPRKPPSLAAGPVGTYGKAVSPPPSPRASPVAALKAKVIQ
KLEDVSKPPTYAYPATPSSHPTSPPPASPPPTPGIPRKEEAPENVVEKKDLELEKEAPSP
FQALFSDIPPRYPFQALPPHYGRPYPFLLQPTAAADADGLAPDVPLPADGPERLALSPED
KPIRLSPSKIPEPLREVPDEEPLVEREVKAEVEDMDEGPAELPSLESPLALPPEEALAAP
SPTGGLLEAQALSAGSQGPAEPSGCPDFAEGAEARVDSPGRTESCAATPDLEGRLTPEPL
VEAKEEPVEVPVDVPMAVPLAEPVPEEDLAQAAPSEPRPSLDLPDCDVPAGEGERLSLEA
REATPVPGSACFLEEVGSDQFLPSPEDPLAGMNALAAAAELPQARPLPSPGTGGQALEKL
EAAQSLVLEQSFLHGITLLSEIAELELEKRSQEVAGAGASAERGPVVRPSLESLLAASSH
MLKEVLDGPFVDPLKNLRLPRELNPNKKYSWMQKKDERMYAMKSSLESMDAMELDFRMRL
AEVQRQYKEKQRELVKLQRRRDAEDRREEPHRSLARRGPGRPRKRTHALSALSPPRKRGK
SRIRSGKLSSKPLLTSDDYELGAGVRKRHKAPEEDPDALGGTGKARGRSQPWDEHEASSD
FMSQLKIKKKKMASDQEQLASKLDKALSLTKQDKLKSPFKFSDSSGGKSKTSGGCGRYLT
PYDSLLGKDRKALAKGLSLSLKASREGKHKRAAKARKMEVGFKARGQPKSAHSPFASEVS
SYSYNTDSEDEEEFLKDEWAAQGPSSAKLPTSLLCGVVAKPSKPAGGPKLSKRGLAAART
LKPKPAAGRKQPFCLLLQEVEARSSFSDSSEDSFDQDESSEEEEEEDELEEEEDEAGGGY
RLGARERALSPGLEESGLGLLARFAASALPSPTVGPSLSVVQLEAKQKARKKEERQSLMG
TEFEYTDSESDVKVRKRSPAGLLRPKKGPGESGSALAAPSARVPGPTSPDKAKLAAEKGR
KARKPRGPKEPGLEAGPEASDDDLWTRRRSERIFLHDASAAPAPSSAAPAAAKAGRCAKA
GPASPRKDAGRTKDRKDPRKKKKGKEAGSGAALPAPRVPALPPEARAPHSSSPAAAKRSK
AKAKGKEVKKENRGKGGAVSKLMESMAAEEDFEPNQDSSFSEDEHLPPGGAAERPLTPAP
RSCIIDKDELKDGLRVLIPMDDKLLYAGHVQTVHSPDIYRVVVEGERGNRPHIYCLEQLL
QEAIIDVRPASTRFLPQGTRIAAYWSQQYRCLYPGTVVRGLLGLEDDGDLITVEFDDGDT
GRIPLSHIRLLPPDYKIQCAEPSPALLVPSAKRRSRKTSKDTGDSKDGAAPGSEESGAKA
RGRGRKPSTKAKSDRAAVLEEGGSTEEVPSTPLALEPISTPSSKKSPPEPVDKRAKAPKA
RPAPPQPSPAPSTFTSCPAPEPFGELPAPATALAPAPLASMPATMPATRPKPRKARAAED
SATKGARRPGEEAELLVKLDHEGVMSPKSKKAKEALLLREDPGAGGWQEPKGLLGLGSYP
PAAGGPEPKAARPKAGSGDLAQEPAAGLPFEDAAKPQSPDKGQAEQDGAEESESGSSSSS
SSDSGGGSSSSSSSSSETEGEEDAQGGGRRCSASSSRASSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTTDESSCSSDDEAAPAAAAGPSAPPA
LPSTAPKPAGKARASGHPPGKKAPAPAPQAPAPQPKAQAGAKSRPKKREGVHLPTTKELA
KRQRLPSVENRPKIAAFLPARQLWKWFGKPTQRRGMKGKARKLFYKAIVRGKEMIRIGDC
AVFLSAGRPNLPYIGRIQSMWESWGSNMVVRVKWFYHPEETSPGKRLHEGQHWDQKSGRS
LPAALRASSQRKDFMERALYQSSHVDENDVQTVSHKCLVVGLEQYEQMLKTKKYQDSEGL
YYLAGTYEPTTGMIFSTDGVPVLC
NT seq
8895 nt
NT seq
+upstream
nt +downstream
nt
atggatggccgagacttcgggcccccgcggtccgtgcacggccccccgccgccgctgctg
tccggcctggccatggacagccaccgcgtgggtgcggccacggccggacgcctgcccgct
tcaggcttgcccggcccgctgccgcctgggaagtacatggccggcctcaacctccacccg
cacccgggcgaggccttcttgggcagctttgtggccagcgggatggggccctcagcctcg
tcccatggaagcccggtgcccctgccctctgacctctccttccgctcccccacccccagc
aacctgcccatggtgcagctgtgggccgcccatgcccatgaaggcttctcccacctgccc
agcgggctgtacccatcctacctccacctgaaccacctggagccccccagcagcgggagc
cccctcctcagccagctgggccagcccagcattttcgatacccagaaagacggcttctac
ctgcccgccccgggggctccgggcgccctgcactctcacacgccctcctccaggacccca
ggcggccactcctcgggcgcctcgaccaaaggctcttctcgcgaaggtccagccaaggag
cgggcgggccgcggcggggagccaccccctctgttcggcaagaaggacccgcgggcccgc
gaagaggcggcggggctgcgcggcgtggtcgacctgacccaggaggcgcgggcagagggc
cgccaggaccgcgggcccccgcgcctccctgagcgcctgtcgcccttcctggccgagccg
gggcctccgcgagcgccgggcacggccaccaccgagtccaagggcaagaacttgccgccg
ccgccggcgctgagcctctgcaacggcaccgcggacgtggggctccccgcactggtggcc
gaggcggcgcgcggcgccaaggaggcggcgcgccaggacgagagcgccaggctgcggcgc
gccgccgaggccctgctgcccgggccgtgcccctgcccctcgccgctcccgccgcccccg
cccccgagcaagggcccgcccgcgccccccgccgcctccggggccttcgccgcctcccag
ccccccgccggcgtctacaccatcttccccgcggcggccgcacgcgagcccggccgcgag
caccgtgtcgtggcgcccaccttcgtgccttccgtggaggccttcgacgagcgcccgggg
cccatccagatcgcgtcgcaggcgcgcgacgcccgggcccgggagcgcgaggcaggcagg
cccggcgtcctgcaggccccgcccgggtccccgcggccgcccccggaccggcccgagggc
ctccgcgagaagaactcggtgatccgctccctcaagcggcctccgcccgccgaggccccg
gcggcgcgggccgcgcgcgcctccccggacctccgggcctacctccccgccaaggagctg
ctcaagcccgaggccgagcctcggccgtgcgagcgcgccccgncggggcctgcgcccccc
gcctcccagcaggccgccaagctcttcagcctggagccggggcggccgcccgcgcccggc
ggccctgagcacaagtggaagcctttcgagctgggcaacttcgccaccacgcagatggcc
gtgctggccgcgcagcaccaccacgccagccgcgccgaggaggaggccgccgcctccaag
aaggcctacctggaccccgggggcgcgctgccccgcgccgcggccacctgcgccaggccc
ggcgccgacatgcacgccgcggcccacgggcccggcgaggcctcggccatgcagagcctc
atcaagtacagcggcagcttcgcccgcgaggccgtggccgtgcggcccggaggctgcggc
aagaagagcccctttgggggcctgggcaccatgaagcccgagcctgctcccacgacggcc
ccccgcgcccaggcccgcctcccacaccccgggggccctgcagcccccggaggccggcag
ctgaagcgggatccagagagacccgagagcgccaaggccttcggccgagagggctccggt
gcccagggtgaggcagaggtgcgacacccgcccgtgggcatagccgtggccgtggcgcgg
cagaaggacagtggcggcagcggtcggctggggcctgggctggccgaccaggagcggtcc
ctgtcgctgagcagcatcaaagggcacggccgagctgacgaggactgcggcgatgagcgg
gccaggcaccgggaggagcggctgatgggggcgcggctggaccgggaccaggagaagctg
ctcagagaaagtaaggagctggccgacctggcccgcctgcaccccaccagctgtgctgca
aatggcctgaaccccaacctcatggtgactgggggccctgcgctggcgggctcaggccgc
tggtccgccgaccctgcagcccacctggccactcacccctggctgccccgctcgggtagc
acctccatgtggctcgctggacacccctacggcttggctcccccgtctctgcaccagggc
atggcgcctgcctttccccccggcctggggggctccctgccgtcggcctaccagttcgtt
agggacccccagtcgggccagctggtggtcattcccagcgatcacttgcctcactttgcg
gagctgatggagcgggccgcggtgccgcccctctggccagccctgtacccgccgggccgc
agctccctgcaccacgcccagcagctgcagctcttctcccagcagcatttcctgcggcag
caggaattcctgtacctgcagcagcaggcggcccaggccctggaactgcagaggagcgcc
cagctggtgcaggagcggctgaaggcccaggagcagcgggcggaaatggaggagaaagtg
agcaagcggagcctggaggccgcaggcaaggctggcctgagcaccaccggccccgggctg
ctgcctcggaagccgcccagcctggccgccggccccgtgggcacctatggcaaggccgtg
agcccaccgccatcgccccgcgcttcccctgtggctgccctgaaggccaaggtcatccag
aagctggaggacgtgtccaagccgcccacctacgcctaccccgccacacccagctcccac
cccaccagcccgccgcccgcctccccgccacccacgcccggcatcccccgcaaggaggag
gcccccgagaacgtcgtggagaagaaggacttagaactggagaaggaagcccccagcccc
ttccaggccctgttctcagatatcccacccaggtacccgtttcaagccctgccaccgcac
tacgggaggccctacccattcctgctgcagcccacggcggctgccgacgccgatggcctg
gcccccgacgtgccgcttccggctgatgggcccgagcgcctggcgctctcacctgaagac
aagcccatccgcttgtccccctccaagatcccggagccactgcgggaggtcccggacgaa
gagccactggtggaacgggaggtgaaggcggaggtggaggacatggacgaaggccccgcg
gaactgccctccctcgagtcaccgctggcgctgccccccgaggaggccctggcggccccg
agccccacagggggcctgctggaggcccaggcgctgagtgctggcagccaggggcctgcg
gagccctccgggtgcccggactttgctgagggggccgaggcgcgcgtcgattctccgggc
cggacagaatcctgcgcggccacccccgacctggaggggcggctgacgcctgagccgctg
gtcgaggccaaggaggagccggtggaggtgcctgtcgacgtgcccatggctgtgcccttg
gcggagccagtgcctgaggaagacctggcccaggcggcccctagtgagccccggcccagc
ctggacctgccagactgtgatgtgcccgccggggagggagagcgcctgagcctggaggcc
agggaggccacgcctgtgcccggcagcgcctgcttcctggaggaggtgggctccgaccag
ttcctgcccagcccagaggacccactggccggcatgaatgccctggcggccgcagcggag
ctaccccaggccaggcctctgccctccccgggcactggaggccaggccctggagaagctg
gaggcagcgcagagcctggtcctggagcagagcttcctgcatgggatcaccctgctgagc
gagatcgccgagctggagctggagaagaggagccaggaggtggcaggtgcaggtgccagt
gccgagcggggcccggtggtgcggccgtcgctggagagcctgctggcggccagcagccac
atgctgaaggaggtgctggacggccccttcgtggatccgctcaagaacctgcggcttccg
cgggagctgaaccccaacaagaagtacagctggatgcagaagaaggatgagcggatgtac
gcgatgaagtcctcgctggagagcatggacgccatggagctggacttccgcatgcggctg
gccgaggtgcagcggcagtacaaggagaagcagcgcgagctggtgaagctgcagaggcgc
cgcgatgccgaggacaggcgcgaggaaccccatagaagcttggcacgcagaggccctggc
aggccgcggaaacggacccacgccctgagcgccctgtcgcccccccgcaagagagggaag
agccgcatccgtagcggaaagctgagcagcaagcccctgctgacctcggacgattacgag
ctgggagcgggggtgaggaagagacacaaggcgcccgaggaagaccctgatgccctcggg
ggaacgggcaaagctcgggggaggagccagccttgggacgagcatgaggcctcgtcggac
ttcatgagtcagctaaagattaagaagaagaagatggccagcgaccaggagcagttggca
agcaagctggacaaagccctctccctcacaaagcaggacaagttgaagtcacccttcaag
ttctcggacagttctggagggaagtcaaaaacgagcgggggctgcggcaggtacttgacg
ccctacgacagcctgctgggcaaggaccggaaggcgctggccaagggcctcagcctgtct
ctgaaagcgtcccgagaaggtaaacacaaaagggccgccaaagccaggaagatggaggtg
ggcttcaaggccagaggccagcccaagtccgcccactccccgttcgcctcggaagtgagc
agctactcctacaatacggactcagaggacgaggaggagttcctgaaggacgagtgggcc
gcccagggcccctccagcgccaagctgccgacgtccctcctgtgcggcgtggtggccaag
cccagcaagccggccggcggccccaagctgagcaagcggggcctggcggccgcccggacg
ctgaagcccaagccggccgccggcaggaagcagccgttttgtttgctgcttcaagaggtc
gaggcccgttcctccttcagcgattcttcggaggactcgtttgaccaagatgagagctcc
gaggaggaggaggaggaggatgagctggaggaggaggaggacgaggccggtggtggctat
aggctgggggcccgggaacgggccctgtcgccaggcctggaggagagcgggctgggcctg
ctggcccgctttgcagccagtgcccttcccagccccaccgtggggccgtccctgtcggtg
gtgcagctggaggccaagcagaaggcccggaagaaagaggagcggcagagcctgatgggc
acggagttcgagtacaccgactcggagagcgacgtcaaggtgcggaagaggtcgcccgcc
gggctgctgcggcccaagaaggggccgggggagtcaggttctgccctggccgcgcccagc
gcccgagtccccggtcccacgagcccggacaaggccaagctggcggccgagaaagggcgc
aaggcccgcaagccgcggggccccaaggagcctggcctggaggcggggcccgaggccagc
gacgacgacctgtggacgcggcggcgcagcgagcgcatcttcctgcacgacgcctccgcc
gcccctgcgcccagcagcgctgcgcccgccgccgccaaggccggccgctgtgccaaggcc
ggcccggccagcccgcgcaaggacgccggccgcaccaaggacaggaaggaccctaggaag
aagaaaaaggggaaggaggcagggtccggagccgcgctgcccgcgccccgcgttcccgcc
ctgccccccgaggcccgggcccctcactccagctccccggctgccgccaagcggagcaag
gccaaggccaaagggaaggaggtgaagaaggagaaccggggcaaggggggcgccgtgagc
aagctgatggagagcatggcggccgaggaggactttgagcccaaccaggactcgagcttc
tctgaggacgagcacctgccgccaggcggggctgcggagcggcccctgacgccggcccct
cgctcctgcatcatcgacaaggatgagctgaaggacgggctgcgcgtgctcatccccatg
gacgacaagctgctgtacgcggggcacgtgcagacggtgcactcgccagacatataccgg
gtggtggtagagggggaacgcgggaaccggccccacatctactgtctggagcagctgctg
caggaggcgatcatcgacgtgaggccggcctccactcgcttcttgccgcaagggaccagg
atcgcggcttactggagccagcagtaccgctgcctctaccccggcaccgtggtccgaggt
ttgctgggcctggaggacgacggggacctgatcaccgtggagttcgatgacggggacacc
gggaggatccccctctcgcacatccgcctgctgcctccggactacaagatccagtgtgcc
gagccgtccccggccctcctggtgccgagcgccaagcgccgcagccggaagaccagcaaa
gacaccggcgacagcaaagacggggccgcgccagggtccgaggagtcgggtgccaaggcg
cgggggcgggggcggaaacccagcaccaaagccaagagtgacagagctgccgtcctggag
gaggggggctcgacagaggaggtccctagcaccccgttggccctggagcccatcagcacc
ccaagttccaagaagagtcccccagaaccagtggacaagcgggccaaagcccccaaggct
cgcccggcgccgccacagcccagcccagcaccgtccaccttcaccagctgcccggcgcct
gagccctttggggagctgccggcccccgccaccgccctggcccccgcgcccctcgccagc
atgcccgccaccatgcccgccacccgccccaagcccaggaaggcccgcgcagccgaggac
tcagccaccaagggcgcccggaggccgggggaggaggccgagctgctcgtcaagctggac
catgagggcgtgatgtcgcctaagagcaagaaggccaaagaggccctgctcctgcgggag
gaccccggggctggcggctggcaggagcccaagggcctgctgggcctgggcagctacccg
ccagcggccggcggcccggagcccaaggcggcccggcccaaggctgggagcggcgacctg
gcccaggagcccgcggccgggctccccttcgaggacgcggcgaagccccagagcccggac
aagggccaggccgagcaggacggggccgaggagtcggagagcggcagcagcagcagcagc
agcagcgacagtggcggcggcagcagcagcagcagcagcagcagctcggagacggagggc
gaggaggacgcccagggcgggggccggcgctgcagcgcctccagctccagggcctcctcg
tcctcgtcgtcgtcgtcctcgtcgtcgtcctcctcgtcgtcgtcgtcctcgtcctcctcc
tcctcgtcctcctcctcgtcctcctcgtcgtcctcctcgtcctcgtcctcctcgtcctcg
tcgtcctcctcgtcctcgtcgtcgtcgtcctcgtcctcgtccaccaccgacgagtcctcc
tgcagctcggacgacgaggcggcccccgcggccgcggccggcccctcggccccgcccgcg
ctccccagcacggcgcccaagccggcgggcaaggcccgcgcctcgggccaccctccgggc
aagaaggcgcccgcgcccgcgccccaggcgcccgcgccgcagcccaaggcccaggccggg
gccaagagccgccccaagaagagagagggcgtccacctgcccaccaccaaggagctggcc
aagcggcagcgcctgccgtccgtggagaaccggcccaagatcgccgccttcctgccggcc
cggcagctctggaagtggttcggcaagcccacccagcgccgcggcatgaagggcaaggcg
cgcaagctcttctacaaggcgatcgtgcgcggcaaggagatgatccgcatcggggactgc
gccgtcttcctgtcggccggccgccccaacctgccctacatcggccgcatccagagcatg
tgggagtcctggggcagcaacatggtcgtccgcgtcaagtggttctaccaccccgaggag
accagccccggcaagcgcctccacgagggccagcactgggaccagaagtccggccgcagc
ctccctgcagccctgcgggcctccagccagaggaaggacttcatggagcgcgccctgtac
cagtcctcgcacgtggacgagaacgacgtgcagacggtgtcgcacaagtgcctggtggtg
ggcctggagcagtacgagcagatgctcaagaccaagaagtaccaggacagcgagggcctc
tactacctggctggcacctacgagcccaccacgggcatgatcttctccaccgacggcgtg
cccgtgctctgctga
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integrated database retrieval system
