Sus scrofa (pig): 100515026
Help
Entry
100515026 CDS
T01009
Symbol
PRPF40B
Name
(RefSeq) pre-mRNA-processing factor 40 homolog B isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
ssc
Sus scrofa (pig)
Pathway
ssc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100515026 (PRPF40B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ssc03041
]
100515026 (PRPF40B)
Spliceosome [BR:
ssc03041
]
Complex A
U1 snRNP components
U1 related factors
100515026 (PRPF40B)
Complex B
100515026 (PRPF40B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
DUF4936
WW_2
RhoGAP-FF1
Motif
Other DBs
NCBI-GeneID:
100515026
NCBI-ProteinID:
XP_020947277
Ensembl:
ENSSSCG00000000204
LinkDB
All DBs
Position
5:15570140..15593140
Genome browser
AA seq
911 aa
AA seq
DB search
MSVPDSGPRPPAAPAPFPPGPPMMPPPFMPPPGIPPPFPPMGLPPMSQRPPAIPPMPPGI
MPPMLPPMGAPPPLTQIPGMVPPMMPGMLMPAVPVTAATAPGADTASSAVPGTGPPRALW
SEHVAPDGRIYYYNADDKQSVWEKPSVLKSKAELLLSQCPWKEYKSDTGKPYYYNNQSKE
SRWTRPKDLDDLEALVKQEAAGKQPQQPQSLQPQPPQPQPDPPPVPPGSTLVPTGLLEPE
PGGSEDCNVSEAGQPLEQGFLQQPEEGPSSSAGQHQPPQQEEEESKSEPERSGLSWSNRE
KAKQAFKELLRDKAVPSNASWEQAMKMVVTDPRYSALPKLSEKKQAFNAYKAQREKEEKE
EARLRAKEAKQTLQHFLEQHERMTSTTRYRRAEQTFGELEVWAVVPERDRKEVYDDVLFF
LAKKEKEQAKQLRRRNIQALKSILDGMSSVNFQTTWSQAQQYLMDNPSFAQDHQLQNMDK
EDALICFEEHIRALEREEEEERERARLRERRQQRKNREAFQTFLDELHETGQLHSMSTWM
ELYPAVSTDVRFANMLGQPGSTPLDLFKFYVEELKARFHDEKKIIKDILKDRGFCVEVNT
AFEDFAHVISFDKRAAALDAGNIKLTFNSLLEKAEAREREREKEEARRLRRREAAFRSML
RQAVPALELGTAWEEVRERFVCDSAFEQITLESERIRLFREFLQVLETECQHLHTKGRKH
GRKSKKHHRKRSHSPSGSESEEEELPPPSLRPPRRRRRNPSESGSEPSSSLDSVESGGAA
LGGRGSPSSRLLLGSDHGLRKAKKPKKKTKKRRHKSVRSEGASVHGPAVLGDVFARLPAC
PSRELTRRALGSYRTVPRARQTLRRKLARRVMRKNQNRTRTGTSGGQSSLTAPQALESRR
RRRAGTRRKVS
NT seq
2736 nt
NT seq
+upstream
nt +downstream
nt
atgtcggttcccgattctggtccccggcccccagcagcgcctgcccccttcccaccgggg
ccccccatgatgccaccacccttcatgccccctccaggaatccccccaccttttcctcca
atggggctcccccccatgagtcagagaccaccagccatcccccccatgccgcctggcatc
atgcccccaatgcttccaccgatgggggcgccaccaccactcacacagataccaggaatg
gtacctcccatgatgccgggaatgctgatgccagcagtgcctgtcactgcagcgacggct
ccgggtgcggacaccgccagctctgctgtgcctgggactggccctccgagggccctgtgg
agtgagcatgtggcccccgatgggcgcatctactactacaatgctgacgacaagcagtcc
gtgtgggagaagcccagcgtgctcaagtccaaggcagagctcctgctgtcccagtgtccc
tggaaagagtacaagtcggacacaggcaaaccttactactataacaaccagagtaaggag
tcccgctggacccggcccaaggacctggatgacctggaggctctagtcaaacaggaggct
gcagggaaacagccgcagcagccgcagagcctacagccccagcctcctcagccgcagccc
gaccccccgcctgtgcctcctggctccaccttggtgcccacaggcctcctagaacctgag
ccaggtgggagtgaagattgcaatgtgtcagaggctggccagcccctggagcagggcttc
ctgcagcagccggaggagggccccagcagttctgctggacagcatcagccaccacagcag
gaggaagaggaatccaagtcagaaccagagaggtctggcctcagttggagcaaccgggag
aaggcaaagcaggccttcaaagagctgctgcgagacaaggctgtcccctccaacgcttcg
tgggaacaggccatgaagatggtggtcactgacccccgttacagtgccttgcccaaactg
agcgagaaaaagcaggcattcaatgcctacaaggcgcagcgggagaaggaggagaaggaa
gaggctcggctaagagccaaggaggccaagcagaccctgcagcatttcctggagcagcac
gagcgcatgacctccaccacccgctaccggcgggcagaacagaccttcggggagctagag
gtctgggctgtggtccccgagagggatcgaaaagaggtttatgacgatgtcctcttcttc
ctggccaagaaggagaaggaacaggccaagcagctccggcgccgcaacatccaggccctg
aagagcatcctagatgggatgagtagcgtcaacttccaaaccacgtggtcccaggcccag
cagtacctcatggataaccccagctttgctcaggaccatcagctgcagaacatggacaaa
gaagatgcgctgatctgctttgaggagcacatccgagctttggagagggaggaggaagag
gagcgggagcgggcccggcttcgggagcggcgccagcagcgcaagaaccgagaggccttc
cagaccttcctggatgagctgcacgagacagggcagctgcactctatgtccacctggatg
gagctgtacccagcagtcagcactgatgtccgctttgccaacatgctgggccagccgggc
tccacccctctggacttgttcaagttctacgtggaggagttgaaggcacgattccatgat
gagaagaagatcattaaggacatccttaaggaccggggcttctgcgtggaagtgaacaca
gcctttgaggacttcgcccacgtcataagctttgacaagagggctgctgcgctggatgca
ggcaacatcaagctgactttcaatagtctgctggaaaaagcagaggcacgggagagagag
cgggagaaggaggaggcacgcaggctgcggcgcagggaagctgcctttcgaagcatgctg
aggcaggctgtgcctgctctggagctgggcactgcctgggaagaggtccgtgagcgcttt
gtgtgcgactcagcctttgagcagatcaccctggagtcggagaggatccggctcttccgg
gagttcctgcaggtactggagactgaatgccagcacctccacaccaaaggccgaaaacac
ggcagaaagagcaagaagcaccatcgcaagcgttcgcactcgccttcaggctccgagtca
gaagaggaggagctgcccccaccatctctccggccccccaggcggaggcggcggaacccc
tcagagtcgggctccgagccctcttcctcacttgattctgttgaaagtgggggtgctgcc
cttggaggacggggttccccatcctcacgccttctccttggatcagatcatggtcttcgc
aaagccaagaaaccaaaaaagaaaaccaagaagagaagacacaagtcggtgcgtagcgaa
ggagcgtccgttcacggccctgctgtgttaggagacgtcttcgcccgcctcccggcctgt
ccttcacgggaactgacgaggcgggctctgggctcttacagaacagtcccgagagcgaga
cagaccctgaggagaaagctggcaaggagagtgatgagaaagaaccagaacaggacaagg
acagggacctccggcgggcagagctccctaaccgctccccaggctttggaatcaagaagg
agaagacgggctgggacacgtcggaaagtgagctga
DBGET
integrated database retrieval system
