Sus scrofa (pig): 100515336
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Entry
100515336 CDS
T01009
Symbol
COL4A1
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(IV) chain
KO
K06237
collagen type IV alpha
Organism
ssc
Sus scrofa (pig)
Pathway
ssc04151
PI3K-Akt signaling pathway
ssc04382
Cornified envelope formation
ssc04510
Focal adhesion
ssc04512
ECM-receptor interaction
ssc04820
Cytoskeleton in muscle cells
ssc04926
Relaxin signaling pathway
ssc04933
AGE-RAGE signaling pathway in diabetic complications
ssc04974
Protein digestion and absorption
ssc05146
Amoebiasis
ssc05165
Human papillomavirus infection
ssc05200
Pathways in cancer
ssc05222
Small cell lung cancer
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
100515336 (COL4A1)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
100515336 (COL4A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
100515336 (COL4A1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
100515336 (COL4A1)
09150 Organismal Systems
09152 Endocrine system
04926 Relaxin signaling pathway
100515336 (COL4A1)
09154 Digestive system
04974 Protein digestion and absorption
100515336 (COL4A1)
09158 Development and regeneration
04382 Cornified envelope formation
100515336 (COL4A1)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
100515336 (COL4A1)
09162 Cancer: specific types
05222 Small cell lung cancer
100515336 (COL4A1)
09172 Infectious disease: viral
05165 Human papillomavirus infection
100515336 (COL4A1)
09174 Infectious disease: parasitic
05146 Amoebiasis
100515336 (COL4A1)
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
100515336 (COL4A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ssc04147
]
100515336 (COL4A1)
00536 Glycosaminoglycan binding proteins [BR:
ssc00536
]
100515336 (COL4A1)
Exosome [BR:
ssc04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
100515336 (COL4A1)
Glycosaminoglycan binding proteins [BR:
ssc00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
100515336 (COL4A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
100515336
NCBI-ProteinID:
XP_020921569
Ensembl:
ENSSSCG00000009544
LinkDB
All DBs
Position
11:complement(76858332..76997409)
Genome browser
AA seq
1668 aa
AA seq
DB search
MGPRLGVWLLLLPAALLLHESSRAAAKGGCAGSGCGKCDCHGVKGQKGERGLPGLQGVIG
FPGMQGPEGPQGPAGQKGDTGEPGLPGTKGTRGPPGASGYPGNPGLPGIPGQDGPPGPPG
IPGCNGTKGERGPVGPPGLPGFAGNPGPPGLPGMKGDPGEILGHIPGTLLKGERGFPGPP
GAPGSPGLPGLQGPVGPPGFTGPPGPPGPPGPPGEKGQMGLSFQGPKGDKGDQGVSGPPG
VPGQAQVKEKGDFATKGEKGQKGEPGFQGMPGIGEKGEPGKPGPRGKPGKDGEKGEKGSP
GFPGDSGYPGLPGREGLKGDKGEAGPPGPPGTVIGPGLLGEKGERGYPGAPGLRGEPGPK
GFPGLQGQPGPPGLPIPGQPGAPGYPGERGEKGDQGFPGVSLPGPSGRDGFPGPPGPPGP
PGQPGHTNGIVECQPGPPGDQGLPGSPGQPGLTGEVGEKGQKGESCLICDSTGLRGPPGP
QGPPGEIGFPGQPGAKGDRGLPGRDGLEGLPGPQGAPGLMGQPGAKGEPGEIYFDIRLKG
DKGDPGFPGQPGMPGRAGSPGRDGHPGLPGPKGSPGSAGLKGERGPPGGVGFPGSRGDIG
PPGPPGFGPIGPIGDKGQAGFPGNPGAPGQPGPKGEAGKVVPLPGPPGAEGLPGSPGFQG
PQGDRGFPGTPGRPGLPGEKGAVGQPGIGFPGPPGPKGVDGLPGDAGPPGNPGRQGFNGL
PGNPGAPGQKGEPGIGLPGLKGLPGLPGTPGTPGEKGNIGGPGVPGEHGAIGPPGLQGIR
GDPGPPGLQGPKGAPGVPGIGPPGAMGPPGGQGPPGSSGPPGVKGEKGFPGFPGLDMPGP
KGDKGXQGLPGLTGQSGLPGLPGQQGTPGLPGFPGPKGEMGVMGTPGQPGSPGPAGAPGL
PGEKGDHGFPGSSGPRGDPGFKGDKGDVGLPGKPGSMDKVDMGSMKGQKGDQGEKGQTGP
TGDKGSRGDPGAPGVPGKDGQAGHPGHPGPKGDPGISGTPGAPGLPGPKGSVGGMGLPGT
PGEKGVPGIPGPQGVPGLPGEKGAKGEKGQAGLPGIGIPGRPGDKGDQGLAGFPGSPGEK
GEKGSXGIPGLPGSPGPKGSPGSVGYPGSPGSPGEKGDKGLPGLDGAPGSKGEAGLPGKP
GPTGPAGQKGEPGSDGIPGSAGEKGEPGLPGRGFPGFPGTKGEKGSKGDVGFPGLAGSPG
IPGSKGEQGFMGPPGPQGQPGLPGIPGHAVEGPKGDRGPQGQPGLPGLPGPMGPPGLPGL
DGLKGDKGNPGWPGAPGAPGPKGDPGFQGMPGIGGSPGITGSKGDMGPPGVPGFQGQKGL
PGLQGVKGDQGDQGFPGTKGLPGPPGPPGPYDIIKGEPGLPGPEGPAGLKGLQGPPGPKG
QQGVTGSVGLPGPPGIPGFDGAPGQKGETGPFGPPGPRGFPGPPGPDGLPGSMGPPGTPS
VDHGFLVTRHSQTTDDPQCPPGTKILYHGYSLLYVQGNERAHGQDLGTAGSCLRKFSTMP
FLFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPITGDSIRPFISRCAVCEAPAMVMAVH
SQTIQIPQCPSGWSSLWIGYSFVMHTSAGAEGSGQALASPGSCLEEFRSAPFIECHGRGT
CNYYANAYSFWLATIERSEMFKKPTPSTLKAGELRTHVSRCQVCMRRT
NT seq
5007 nt
NT seq
+upstream
nt +downstream
nt
atggggccccggctcggcgtctggctgctgctgctgcccgccgccctcctgctccacgag
agcagccgggccgccgcgaagggcggttgtgctggctctgggtgcgggaaatgtgactgc
cacggagtgaagggacagaagggagaaagaggcctcccaggattacaaggtgtcatcggg
tttccgggaatgcagggacctgagggcccccagggacccgcaggacagaagggtgacact
ggagaaccaggactgccaggcactaaagggacaagaggacccccaggagcatctggttac
cctggaaacccaggacttcctggtattcctggccaggatgggcccccgggtcccccaggc
atcccgggatgcaacgggacaaagggtgagagaggaccagtgggacctccgggtttgcct
ggatttgccggaaatcctggaccaccagggttgccaggcatgaagggggaccccggtgaa
atactcggccacatacctgggaccctcctgaaaggtgaaagaggatttcctggcccccca
ggagcacccggctccccaggattgccagggctgcagggtcccgtcggccctcccggcttc
accggaccacccggtcccccaggccctcctggccctccaggcgaaaaggggcaaatgggc
ttgagtttccaaggaccgaaaggtgacaagggtgatcaaggggtcagtgggcccccagga
gtgccaggacaagctcaagttaaagagaaaggagactttgccactaaaggagagaagggt
caaaaaggtgaaccaggatttcagggaatgccagggattggagagaaaggtgaacctgga
aaaccgggaccccgaggaaagcccggaaaagatggtgaaaaaggagaaaaaggaagccca
gggttcccaggcgattcggggtaccccggactcccaggccgagagggtttaaagggagac
aaaggtgaagcaggcccccccggcccccctggcactgtcattggccccggactcttggga
gagaagggagagcgggggtacccaggagctccagggttgagaggagagccaggtcccaaa
ggcttcccaggattgcaaggccagccgggccctccaggcttaccgataccagggcagccg
ggcgcccctggctacccgggtgagagaggagagaaaggtgaccagggctttcccggcgtg
tccttgcccggaccaagtggaagggatggattcccaggtccccctgggccccccggcccc
cctgggcagccaggccacacaaatggaattgtggaatgccagccggggccaccaggtgac
cagggccttcccggaagtccgggccagccggggttgacgggcgaagttggagaaaaaggt
caaaaaggagagagttgcctcatctgtgactcgacaggacttcgtgggccccctgggcca
cagggccccccaggagaaataggttttccaggacagcccggggccaagggcgacagaggc
ttacccggcagagatggccttgagggactgcctggcccgcaaggcgcaccagggctgatg
ggccagccaggagccaagggagagcctggcgagatttacttcgacattcggctcaagggt
gacaaaggagaccccgggttcccaggccagcccggcatgccaggcagagcaggatctcca
ggaagagacggccaccccggtctgcccggccccaagggctccccgggttccgcaggactg
aaaggggaacgcggcccccccggaggagttggattccctggcagtcgtggtgacatcggc
cctcccgggcccccagggtttggccccattggtcccattggtgacaaaggacaggcgggc
ttcccgggcaaccctggggccccaggccagccaggtcccaagggcgaagcaggaaaagtc
gtgcccttgcctggcccccccggagcagaaggactgccggggtcccccggtttccaaggg
cctcaaggtgaccgaggttttcctggaaccccaggaaggccgggcctcccgggagagaag
ggtgcagtcggccagcctggaattggatttccagggcccccgggtcccaaaggtgttgat
ggtttacctggagatgctggacctcccgggaatcccggtcgccaagggtttaacggctta
cctggcaacccaggtgcgcccggccaaaagggagagcctggaatcgggctgccaggactc
aaagggctgccagggctgcccggcacccccggaacccctggggagaagggaaacatcggg
ggaccaggagttcctggagagcacggcgccatcggccccccaggccttcagggaatccga
ggtgacccaggacctcctggattgcaaggtcccaaaggagcaccgggagtccccggaata
gggccccctggagccatgggcccccctggaggacaggggcccccaggatcatcaggaccc
cctggagtgaaaggagagaagggctttccgggattcccaggcctggacatgccgggcccc
aaaggagacaagggcntgcaggggctccccggcctgacgggacagtcagggctgcctggc
ctccctggacagcagggcacacccgggctgcccgggtttccaggtcccaagggagagatg
ggtgtcatgggcacccctggacagcccggctcaccaggacccgccggtgcaccgggactg
ccgggtgaaaaaggcgaccacggcttcccaggctcctcgggacccaggggagaccctggc
ttcaagggcgataagggagatgtgggtctccccggcaagccaggctccatggataaagtg
gacatgggcagcatgaagggccagaagggagaccaaggagagaaaggacagactggccca
accggtgacaaaggatcccggggagatcccggagccccaggagtgcccggaaaggacggc
caggcagggcaccctgggcatccaggacctaaaggtgacccaggcataagtgggacccca
ggtgctccgggacttcctggacccaaaggatcggttggtggcatgggcctgccaggaacc
cccggagaaaaaggtgtgcctggcatccccggccctcagggagtccccggcttacctgga
gagaagggagcaaaaggagagaaaggacaggcgggcctacctggcattgggattccagga
aggcctggcgacaagggagaccaaggcctggcgggcttcccgggaagccctggagagaag
ggagagaaggggagcntcgggatcccggggctgcccggttctccgggccccaagggctca
cctgggagtgtaggctatccaggaagccccgggtcgcctggagaaaaaggcgacaaaggg
ctcccgggactggatggcgcccccggcagcaaaggagaagcaggtcttcctgggaagcct
ggccccaccggccccgcgggccagaagggggagcccggcagcgacgggatcccagggtcg
gcaggagagaagggtgaaccaggtctgcccggaagaggattcccagggtttccagggacc
aaaggagagaaaggttcaaagggtgacgtgggcttcccaggcttagccgggagcccagga
attcctggatccaaaggagagcaaggattcatggggcctccggggccgcagggacagccg
ggattgccggggattccaggccacgccgtggagggacccaaaggagatcgcggtccacag
ggacaacccggcctcccagggcttccgggacccatggggcctccagggctccctggactt
gatgggctgaaaggtgacaagggaaacccaggctggccgggggctcctggtgctccaggg
cccaagggagacccaggattccagggcatgccggggattggcggttctccaggaatcacg
ggctccaagggtgacatgggacctccaggagttccagggtttcaaggtcagaagggcctc
cctgggctccagggagtgaaaggtgaccaaggagaccaagggttccccggaactaaaggt
ctccccggcccccccggcccccccggtccctacgacatcatcaaaggggagccagggctc
cctggtcctgagggccccgcaggtctgaaggggctgcagggacctccaggccccaaagga
cagcagggtgtgacgggatcggtgggcttacctgggccgccaggtatccccgggtttgac
ggtgcccctggccagaaaggagagacgggaccctttggacctcctggccccagaggcttc
ccaggtccgcccgggcctgacgggctgccaggatccatgggacccccgggcaccccgtcg
gtcgatcacggcttcctcgtgaccaggcacagtcaaaccacagacgacccccagtgtcct
cctggcaccaagatcctctaccacggctactctctgctctacgtgcagggcaacgagcgg
gcgcacggccaggacttgggcacggccggcagctgcctgcgcaagttcagcaccatgccc
ttcctcttctgcaacatcaacaacgtctgcaacttcgcgtcccggaacgactactcgtac
tggctgtcgacgcccgagcccatgcccatgtccatggcgcccatcaccggggacagcatc
aggcccttcatcagcaggtgtgcggtgtgcgaggcgccggccatggtgatggcagtgcac
agccagaccatccagatcccgcagtgccccagcggctggtcctccctctggattggctac
tcctttgtgatgcacaccagcgccggtgccgaaggttctggccaggccctggcttccccc
ggctcctgtctggaggagttcagaagtgccccattcatcgagtgccacggccgcgggacc
tgcaattactatgcaaacgcctacagcttctggctcgccaccatagagcggagcgagatg
ttcaagaagcccacgccgtccaccttgaaggccggggagctgcgcacgcacgtcagtcgc
tgccaagtgtgcatgcggagaacatga
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