Sus scrofa (pig): 100515361
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Entry
100515361 CDS
T01009
Symbol
DDX39A
Name
(RefSeq) LOW QUALITY PROTEIN: ATP-dependent RNA helicase DDX39A
KO
K13182
ATP-dependent RNA helicase DDX39 [EC:
5.6.2.7
]
Organism
ssc
Sus scrofa (pig)
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ssc03041
]
100515361 (DDX39A)
Enzymes [BR:
ssc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
100515361 (DDX39A)
Spliceosome [BR:
ssc03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
100515361 (DDX39A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
100515361
NCBI-ProteinID:
XP_003123418
Ensembl:
ENSSSCG00000013776
UniProt:
A0A8D0US52
LinkDB
All DBs
Position
2:64836040..64844996
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AA seq
427 aa
AA seq
DB search
MAEQDVENELLDYEEDEEPQAPPENAPAPXKKDVKGSYVSIHSSGFRDFLLKPELLRAIV
DCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVNGQVTVLVMCH
TRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKKNCPHVVVGTPGRILALVR
NRSLNLKNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMMFSATLSKEIRPVCRK
FMQDPMEVFVDDETKLTLHGLQQYYVKLKDSEKNRKLFDLLDVLEFNQVVIFVKSVQRCM
ALAQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIVFN
YDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNVAELPEEIDIS
TYIEQSR
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atggcggaacaggatgtggaaaatgagcttctggattatgaagaagatgaagagccccag
gctcctccagagaatgctccagctcccnccaagaaagatgtcaagggttcctatgtttct
atccacagctctggcttccgggactttctactgaagccagagctcctgagggccatagtg
gactgtggcttcgagcatccatctgaggtccagcacgaatgtattccacaagccatcctg
ggcatggacgtcctatgccaggccaagtcaggcatgggcaagactgcagtttttgtactg
gccaccctgcagcagattgagcccgtcaatggacaggtgacagtcctagtaatgtgccac
actcgggagctggccttccagattagcaaggagtacgagcgcttctccaagtacatgcct
agtgtcaaggtgtctgtgttctttgggggcctttctatcaagaaggatgaagaagttttg
aagaagaattgtccccatgtcgtggtggggacgccgggtcggatcctggcacttgtgcgg
aacaggagcctaaacctgaagaatgtcaaacacttcgtgttggatgagtgtgacaagatg
ctggagcagttggacatgaggcgggatgtgcaggagatcttccgcctgacaccgcacgag
aagcagtgcatgatgttcagtgctaccctgagcaaggagatccggcccgtctgcaggaag
ttcatgcaagatcccatggaagtgtttgtggacgacgaaaccaagctcacgctacatgga
ctgcagcaatactatgtcaaactgaaggacagtgagaagaaccgcaagcttttcgacctc
ctggatgtgttggagtttaaccaggtggtgatatttgtgaagtctgtgcagcgctgcatg
gctctggcccagctccttgtggaacagaacttcccagccattgctatccacaggggcatg
gcccaggaggagcgcctgtcacgctatcagcagttcaaggacttccagcggcggatcctg
gtagccaccaatctgtttggccgagggatggacattgagcgcgtcaacattgtcttcaat
tatgacatgcccgaggactcagacacctacctccaccgggtagcccgtgcgggtcgcttt
ggtaccaaaggcctggccattactttcgtgtctgatgagaatgatgccaaaatcctcaat
gacgtccaggatcggtttgaagtgaatgtggcagagcttccagaagaaattgacatctcc
acgtacattgaacagagccggtaa
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