Sus scrofa (pig): 100515470
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Entry
100515470 CDS
T01009
Symbol
LSM7
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm7
KO
K12626
U6 snRNA-associated Sm-like protein LSm7
Organism
ssc
Sus scrofa (pig)
Pathway
ssc03018
RNA degradation
ssc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100515470 (LSM7)
09123 Folding, sorting and degradation
03018 RNA degradation
100515470 (LSM7)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssc03019
]
100515470 (LSM7)
03041 Spliceosome [BR:
ssc03041
]
100515470 (LSM7)
Messenger RNA biogenesis [BR:
ssc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
100515470 (LSM7)
mRNA degradation factors
5'-3' decay
Lsm complex
100515470 (LSM7)
Spliceosome [BR:
ssc03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
100515470 (LSM7)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
100515470
NCBI-ProteinID:
XP_003123072
LinkDB
All DBs
Position
2:76247010..76251824
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AA seq
150 aa
AA seq
DB search
MSPGPRRRRRQMFPSNALAPRAAQAPGVRRACAGGRGQRARRGGGGKMADKEKKKKESIL
DLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQYKLTEDTRQLGL
VVCRGTSVVLICPQDGMEAIPNPFIQQQDA
NT seq
453 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcccggtccccgccgcaggcgtcggcagatgtttcccagcaacgccttggcgccc
cgcgctgcgcaggcgccaggcgtccgccgcgcatgtgcagggggcagaggccaaagggcg
cggcgcggcggcggcggcaagatggcggacaaagagaagaaaaagaaggaaagcatcttg
gacctgtccaagtacatcgacaagactattcgggtgaagttccagggaggccgcgaagcc
agtggaatcctgaaagggtttgacccactcctcaacctcgtgctggatggcaccatcgaa
tacatgagagacccggacgaccagtacaagctcacagaggacacccggcagctgggcctg
gtggtgtgccggggcacctccgtggtgctcatctgcccgcaggacggcatggaggccatc
cccaaccccttcatccagcagcaggacgcgtag
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