Sus scrofa (pig): 100515887
Help
Entry
100515887 CDS
T01009
Symbol
PARN
Name
(RefSeq) poly(A)-specific ribonuclease PARN isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
ssc
Sus scrofa (pig)
Pathway
ssc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100515887 (PARN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssc03019
]
100515887 (PARN)
Enzymes [BR:
ssc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
100515887 (PARN)
Messenger RNA biogenesis [BR:
ssc03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
100515887 (PARN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
RNA_bind
R3H
RRM_Thc1
NCBP3
RRM_1
T6PP_C
Motif
Other DBs
NCBI-GeneID:
100515887
NCBI-ProteinID:
XP_020942220
UniProt:
A0A5G2RG64
LinkDB
All DBs
Position
3:28616808..28802506
Genome browser
AA seq
638 aa
AA seq
DB search
MEIIRSNFKSNLHKVYQAIEEADFFAIDGEFSGISDGPSVTALTNGFDTPEERYQKLKKH
SMDFLLFQFGLCTFKYDHTDSKYITKSFNFYVFPKPFSRSSPDVKFVCQSSSIDFLASQG
FDFNKVFRNGIPYLNQEEERQLREQYDEKRLQSNGAGALSYVSPNTSKCPVAIPEDQKKF
IDQVVEKIEDLLQSEENRNLDLEPCTGFQRKLIYQTLSWKYPKGIHVETLETEKKERYIV
ISKVDEEERKRREQQKQAKEQEELKDAVGFSRVIHAIANSGKLVIGHNMLLDVMHTVHQF
YCPLPADLNEFKEMTTCVFPRLLDTKLMASTQPFKDIINNTSLAELEKRLKETPFNPPKV
ESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANYLGSFLSPPKIHVSARSKLIEPFFN
KLFLMRVMDIPYLNLEGPDLQPKRDHVLHVTFPKEWKTSDLYQLFSAFGNIQISWIDDTS
AFVSLSQPEQVQIAVNTSKYAESYRIQTYAEYVGRKHEEKQMKRKWAEDGWKEVERKRSN
SQCLPYAPQNHYYHADGLTATSTVRKRNLSPCQAEADLEARVSGELSDTELEQTDPCAES
HSEGRKKAKKLKRMKKDLSPTGSITDSPAKLFEVPDTW
NT seq
1917 nt
NT seq
+upstream
nt +downstream
nt
atggagataatcaggagcaattttaagagtaacctccacaaagtgtaccaggccatagag
gaggcggacttcttcgccatcgatggggagttttcaggaatcagcgatggaccttcagtc
actgcattaacaaatggttttgatactccagaagaaaggtatcagaagcttaaaaagcat
tccatggactttttgctgtttcagtttggcctttgcacttttaagtatgaccacacagat
tcaaagtatataacaaagtcttttaacttctatgttttcccgaaacccttcagtagatcc
tcaccagatgtcaaatttgtttgtcagagctcaagcattgactttctagcaagccaagga
tttgattttaataaagtgtttcgcaacggaattccatacttaaaccaggaagaagaaaga
cagttaagagagcagtatgatgagaagcggctacagtccaatggcgcgggcgctctctcg
tacgtgtctcctaacacttcaaagtgtcccgtggcgattccggaggatcagaagaagttc
attgaccaagtggtagaaaaaatagaagatttattacaaagtgaagaaaacaggaacttg
gatctggagccgtgtactgggttccaaagaaaactgatttatcagactttgagctggaag
tatcccaaaggcattcatgttgagactttggaaactgaaaagaaagagcgatatattgtt
atcagcaaagtggatgaagaagaacgcaaaagaagagagcagcagaaacaagccaaagaa
caggaagagctgaaagatgctgtgggattttctagagtcattcatgccattgctaattcg
gggaaacttgtcattggacacaacatgctcttggacgtgatgcacacggttcatcagttc
tactgccctctgcctgcggacttaaatgagtttaaggagatgacaacatgtgttttcccc
agactcttggatacgaaactgatggccagcacacaaccttttaaggatatcattaacaac
acgtccctcgcagaattggaaaagcggttaaaagagacgcctttcaaccctcctaaagtt
gaaagtgcagaaggttttccaagttatgacacggcttccgaacagctccacgaggcaggc
tatgatgcttacatcacaggactgtgcttcatctccatggccaactatctaggttctttt
cttagtcctccaaaaattcatgtgtctgccagatccaaactcattgaacctttttttaac
aagttgtttcttatgagagtcatggatattccctatctaaacttggaaggaccagacttg
cagcccaaacgcgaccatgtcctccacgtgaccttccccaaggaatggaaaaccagcgac
ctttaccagctcttcagtgcctttggtaacattcagatatcctggattgatgacacatca
gcatttgtttctctcagccaacccgaacaagtgcaaatcgctgtcaataccagcaaatat
gcagaaagctatcggatccagacctatgctgaatacgtgggcagaaaacacgaggagaag
cagatgaagcgaaagtgggcagaagatggttggaaggaggttgagaggaagcggtcaaac
agccagtgcctcccctacgcgccgcagaatcactactaccacgccgatggtcttacagcc
accagcacagtcagaaagagaaacctgagtccctgtcaagcagaagctgacctggaggcc
agagtatcgggggagctttctgacactgagcttgagcagacagatccctgtgcagaatcc
cactcagagggaaggaaaaaggccaagaaattaaaaaggatgaagaaggacctttctccg
acaggaagcatcacggacagcccggccaagctctttgaagtccctgacacgtggtaa
DBGET
integrated database retrieval system
