Sus scrofa (pig): 100515940
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Entry
100515940 CDS
T01009
Symbol
DDX3X
Name
(RefSeq) ATP-dependent RNA helicase DDX3X
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
ssc
Sus scrofa (pig)
Pathway
ssc04622
RIG-I-like receptor signaling pathway
ssc05161
Hepatitis B
ssc05203
Viral carcinogenesis
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09160 Human Diseases
09161 Cancer: overview
05203 Viral carcinogenesis
100515940 (DDX3X)
09172 Infectious disease: viral
05161 Hepatitis B
100515940 (DDX3X)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssc03019
]
100515940 (DDX3X)
03041 Spliceosome [BR:
ssc03041
]
100515940 (DDX3X)
03036 Chromosome and associated proteins [BR:
ssc03036
]
100515940 (DDX3X)
Enzymes [BR:
ssc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
100515940 (DDX3X)
Messenger RNA biogenesis [BR:
ssc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
100515940 (DDX3X)
mRNA cycle factors
Common to processing body (P body) and stress granule
100515940 (DDX3X)
Spliceosome [BR:
ssc03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
100515940 (DDX3X)
Chromosome and associated proteins [BR:
ssc03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
100515940 (DDX3X)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
100515940
NCBI-ProteinID:
NP_001233132
Ensembl:
ENSSSCG00000012252
UniProt:
F4ZS18
LinkDB
All DBs
Position
X:36988031..37005496
Genome browser
AA seq
661 aa
AA seq
DB search
MSHVAVENALGLDQQFAGLDLNSSDNQSGGSTASKGRYIPPHLRNREATKGFYDKDSSRW
SSNKDKDAYSSFGSRNDSRGKSSFFSDRGSGSRGRFDDRGRSDYDGIGSRGDRGGFGKYE
RGGHSRWCDKSDEDDWSKPLPPSERLEQELFSGGNTGINFEKYDDIPVEATGNNCPPHIE
SFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILS
QIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVV
YGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQ
IRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVV
WVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDR
EEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGL
ATSFFNERNANITKDLLDLLVEAKQEVPSWLENMAYEHHYKGSSRGRSKSRFSGGFGARD
YRQSSGASSSSFSSSRASSSRSGGGGHGSSRGFGGGGYGGFYNSDGYGGNYNSQGVDWWG
N
NT seq
1986 nt
NT seq
+upstream
nt +downstream
nt
atgagtcatgtggcggtggaaaatgcgctcgggctggaccagcagtttgctggcctagac
ctgaactcttcagataatcagagtggaggaagtacagccagcaaagggcgctatattcct
cctcacttaaggaacagagaagctactaaaggattctatgacaaagacagttcaaggtgg
agttctaataaagataaggatgcatacagcagttttggatcccgtaatgattcaagagga
aagtctagtttcttcagtgatcgtgggagtggatcaaggggaaggtttgatgaccgtgga
cgaagtgactatgacggcattggcagccgtggtgacagaggtggctttggcaaatatgaa
cgtggtggacatagtcgctggtgtgacaaatcagatgaagatgattggtcaaaaccactt
ccaccaagtgaacgcttggaacaggaactcttttctggaggcaacactgggattaacttt
gaaaaatatgatgacattccagttgaggcaacaggcaacaactgtcctccacatattgaa
agtttcagcgatgttgagatgggagaaattattatgggaaacattgagcttactcgttat
actcgcccgactccagtgcaaaaacatgctattcctattatcaaggagaagagagacctg
atggcttgtgcccaaacagggtctggaaaaaccgcagcatttcttttgcccatcttgagt
cagatttattcagatggtccaggcgaggctttgagggccatgaaggaaaatggaaggtat
gggcgccgcaaacaatacccaatctccttggtattagcaccaactagagaactggcagta
cagatctatgaggaagccaggaaattttcataccgatctagagttcgtccttgcgtggtt
tatggtggtgctgatattggtcagcagattcgagacttagaacgtggatgccacttgtta
gtagccactccgggacgtctggtggatatgatggaaagaggaaagataggattagacttc
tgcaaatacttggtgttagatgaagctgatcggatgttggatatggggttcgaacctcaa
atacgtagaattgttgaacaagatactatgccaccaaagggagttcgccacactatgatg
tttagtgctactttccctaaggaaatacagatgcttgctcgtgatttcttggatgaatat
atctttttggctgtaggaagagttggctcaacctctgagaacattacacagaaagtagtt
tgggtggaagagtcagacaaacggtcatttctgcttgaccttctaaatgcaacaggcaaa
gattcactaaccttagtgtttgtggagaccaaaaagggtgcagattctctagaggatttc
ttataccatgaaggatatgcttgtaccagtatccatggagaccgatctcagagagataga
gaagaagcccttcaccagttccgctcaggaaaaagcccaattctagtggctacagcagta
gcagcaagaggactggacatttcaaatgtgaagcatgttatcaattttgacttgccaagt
gatattgaagaatacgtacatcgcattggccgtacaggacgtgtaggaaaccttggcctt
gccacctcattctttaatgagaggaacgcaaatattaccaaggatttgttggatcttctt
gttgaagctaaacaagaagtgccatcttggttagaaaacatggcttatgaacaccactac
aagggtagcagtcgtggacgttccaaaagtaggttcagtggaggattcggtgccagagac
tatcgacaaagtagtggtgccagcagttccagcttcagcagcagccgcgccagcagcagt
cgcagtggtggaggcggccatggcagcagcagaggatttggcggaggtggctatggaggc
ttttacaacagcgatggatatggaggaaattataactcccagggggttgactggtggggc
aactga
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