Sus scrofa (pig): 100515967
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Entry
100515967 CDS
T01009
Symbol
COL6A5
Name
(RefSeq) collagen alpha-5(VI) chain isoform X1
KO
K06238
collagen type VI alpha
Organism
ssc
Sus scrofa (pig)
Pathway
ssc04151
PI3K-Akt signaling pathway
ssc04510
Focal adhesion
ssc04512
ECM-receptor interaction
ssc04820
Cytoskeleton in muscle cells
ssc04974
Protein digestion and absorption
ssc05165
Human papillomavirus infection
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
100515967 (COL6A5)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
100515967 (COL6A5)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
100515967 (COL6A5)
09142 Cell motility
04820 Cytoskeleton in muscle cells
100515967 (COL6A5)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
100515967 (COL6A5)
09160 Human Diseases
09172 Infectious disease: viral
05165 Human papillomavirus infection
100515967 (COL6A5)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ssc04147
]
100515967 (COL6A5)
00536 Glycosaminoglycan binding proteins [BR:
ssc00536
]
100515967 (COL6A5)
Exosome [BR:
ssc04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
100515967 (COL6A5)
Glycosaminoglycan binding proteins [BR:
ssc00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
100515967 (COL6A5)
Hyaluronan
Extracellular matrix or blood plasma proteins
100515967 (COL6A5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
VWA_2
Collagen
vWA_SIBA-E
VWA_CoxE
Radical_SAM
vWA-TerF-like
Motif
Other DBs
NCBI-GeneID:
100515967
NCBI-ProteinID:
XP_005669320
Ensembl:
ENSSSCG00000011186
LinkDB
All DBs
Position
13:complement(2029543..2174404)
Genome browser
AA seq
2595 aa
AA seq
DB search
MKSLTIIFVLIFWTETLTDQSPGPGPEYADVVFLVDSSDHLGTKSFPYMKTFINKMINSL
PIETDKYHVGLAQYSDKLHTEFQLNTFKSKGPMLNHLKKNFGFLGGSLRIGNALREVHRT
YFSNGRDRKQFPPILVVLASADSEDAVEEAAEALRKDGVRIISVGMQRVSEETLKAMATG
QFHYNLRTVRDLSAFSQNMTQVLKEAIQYKEGEAHTDIQGPFLRACEKDSLADVIFLVDE
SVGTSQNLRNLQNFLKNITSYMDVKDNCLRLGLMSYSDRAETLSVLKSSTSQAEFQKQIQ
KLSLRAGKSNVGAAVEKMRREGFSASSGSRRALGVPQIAVLVTNRPSDDEVREATLNLRL
DDVTVFAMGIHGANKTQLEEIASYPPRQTISMLESYADLGNYTNNFLKKLQNEIWSQIST
KAEQKELDKTGCVDTKEVDIYFLIDGSGSIRSDHFEQIKKFMLEVIENFDIGPDKVRVGA
VQYSDTREKEFDITDYTTDETLRKAISNIRQLGGGTYTGEALDFILQIIKKGREQRINKV
PCYLIVLTDGMSMDDVLEPAEKLRAENIAVHAIGIGEANRTQLQQIAGKEERVSFGQNFD
SLKNIKNEVLHSICTEKGCEDMKADIMFLVDSSGSIGPENFRTMKSFMKNLLAKIQIGLD
KTRIGVVQFSDVTKEEFKLDTYFTQKEISDAIERMSPIEQNTLTGKALTSIEPYFTESKG
ARSMVRKFLILITDGEAQDDVRNPAKVLRDKGVVIFAVGVFRANRTQLEEISGDSSLVFQ
VESFSDLQEIENKLIFRVCALHDCKRIKELDVVFVLDHSSSIQPRDQESMINLTMHLVKK
SDVGPNRVQFGALRYSNEPDIIFYLNSNRSAIMEYLRSLSAKGGDTYTAKALERANILFT
EEHGSRIKQNVKQMLIIITDGKSHDHIHLSDKASKLRAKGIIIYAVGVGEANQEELETMA
GNKHYTIHVSNFDSLKDVYQPLQESMCTNAQESCSISEADVIFFCDGSDMVSDSDFVTMT
TFLSDLIDNFDIESQRIKIGMAQFGSRYQEIIELQNSLNKTQWKSQIQTTTKSKGLPRMD
LALKKVKFMFEQSVGGRRNAGVPQTLMVITSADPRHDVAEAVKTLRESGICIMVLGLGNV
HKERLLPITGNSEKIITFQDFDKLKNVDVKKRMVREICQSCSKTNCFLDIVVGFDISTHR
QGQLLFHGHPRLESYLPGILEDITSIRGVSCGAGAEVQVSVAFKVNSDQNFTTKFHIYKK
TVFDRLLELTVNGATHLNAQFLQSMWATFNDTSASRGQVLLIFSDGLGGESKAMLEDQSD
RLRKAGLDALLVVSLNAPIHNEFSSFEFGKGFDYRTPLTIGTRELGKMLSQYLGNIAERT
CCCTFCKCSGTPGPPGIRGPQALKGFQGLKGSRGHRGEDGDPGIRGDTGPQGSRGITGCP
GERGLKGAKGFSGYKGERGDDGVDGLDGEEGFHGFPGKKGEKGDQGSQGSPGSRGPPGGY
GEKGFPGDPGNPGQNNNIKGQKGSKGEQGRQGKTGQKGTQGSPSPKGSRGREGQRGVQGP
SGEPGNPGPEGAPGTEGFIGLQGLHGLPGRKGEKGREGLKGPQGAPGPAGDKGSVGRPGL
LGRKGEPGIPGDPGPVGPTGQRGKQGDYGIPGYGRVGKKGVKGPRGFPGDIGQKGDVGDP
GIPGGPGPKGFRGLTVTAGLKGEEGSKGPQGPPGRRGPKGMAGQPIYSQCDLIQFMRNHS
PCWEEKCPVYPTELVFALDQSYDITEQRFNETRDIITSIVNDLHIWENNCPVGARVVVVS
YNSGTSYLIRGSDYRNKKQLLQLLSQIKYQNSGEVRDMGNAMRFVARNIFKRTFSGPNVR
RVAVFFSNGQATSSSSIITATMEFSALDISPAVFAYNERVFLDEAFGFDNTGTFQVLPVP
LNGEYEPLEKLRRCTLCYDKCFPDACSKKIFLPEDTYMDVAFLLDNSRNIASDEFKNVKA
LVSSMLDNFDIASYPLISDSGDRIALLSYSPWDRRKKDAIKTEFEFTTYDNQVLMKNHIQ
NYLQQLNGEATIGHALLWTMENLFPGTPNLRKHRVIFVVSAGENHERKEFLRKMALRAKC
QGYVIFVISLGSTQEGDMEELASYPLDHHLIQLGRTHKPNLDYIVKFLKPFVYSVRRGFN
QYPPPTLANACRLIDSEEDNPNTGLLFASEAHEISSGEDSFLGQELSAAKDSPFVMEDSG
NDHLIYTPSQKIVPQKLMTKYEKYQDSEVIASLTSEHETGGRREEPGLTSELRDASLQEY
YMDVAFLIDASRKVGNDEFKEVKAFISSVLDYFHLAPDPLTSTLGDRVAVLTYSPPGYMP
NTEECPVYLEFDLVTYNSMHQMKHHLQDSLQQLNGDVFIGHALQWTIDNVFIGTPNLRKN
KVIFVISAGETNPLDKEVLRNVSLRAKCQGYSIFVFSFGPLHNDKELEQLASQPLDHHLV
QLGRTHKPDMNYIIKFVKPFVHSVRRAINKYPPADLRPKCVDITSPNPENDDTENTVFLL
PEVYEIETENSEPWGGFGSQQQHLFELGDSHDNGSGIIDDLIQKLSMFFLTEELMMKDEE
EAHSEEITAAENDRQ
NT seq
7788 nt
NT seq
+upstream
nt +downstream
nt
atgaagagcctgacaattatatttgtcctaatcttttggactgaaacactgacagatcag
agcccagggccaggccctgagtatgccgatgtggtgtttctggtggacagctccgaccac
ctgggaactaagtccttcccatacatgaagacattcatcaataagatgatcaacagcctc
ccgatagagaccgataagtatcatgtgggcctggctcagtatagtgataaactccacaca
gaattccagctcaacaccttcaagagcaaaggccccatgctgaaccacctcaagaagaac
ttcgggttcctgggtggctccctgcgcatcggaaacgcactccgggaggtacacaggacc
tacttctccaatggaagggacaggaaacagttccccccaatcctggtggtcctggcttcc
gccgactccgaggatgctgtggaagaggccgctgaggccctgcgcaaagatggagtgagg
attatctctgtggggatgcagagggtgtccgaggagaccctgaaggccatggccacgggc
cagttccactacaacctccgaacagtcagagacctcagcgccttctcccaaaacatgacg
caggtcctcaaggaagcaattcagtacaaggagggtgaagctcacactgatatacaaggc
cccttcctcagggcctgtgagaaagattcgcttgctgatgtcatattcctggtggatgag
tctgtcgggaccagtcagaatttaaggaacctgcagaactttctgaaaaatatcacctct
tacatggatgtgaaagacaattgcctgcggcttggacttatgagttacagtgacagagcc
gagaccctttctgttctgaaatcaagcacaagccaggctgaatttcagaagcaaatccag
aagctttccttgcgggctgggaagtccaatgttggggctgctgttgagaagatgaggaga
gaaggcttctcagcatcaagtggcagcagaagggcgctgggagttcctcagattgcagtc
ttggtcactaacaggccatcagatgacgaagtgcgtgaggccaccctgaatctccggctg
gacgatgtaactgtgttcgccatgggcatccacggggccaacaagacccagttagaagaa
atagcgtcttaccctccaagacagacaatctccatgctagaatcctatgcagacttggga
aattatactaacaacttcttgaaaaaactccagaatgaaatatggtcccaaatttcgact
aaggctgaacaaaaggaacttgataaaactggctgtgtggatacaaaagaggttgatatc
tatttcctcattgacggctcaggtagcattaggagtgaccactttgagcaaatcaagaaa
tttatgctggaggtgatagaaaattttgacattggcccagacaaagtccgagttggagct
gtgcaatattctgacacgagagaaaaggaatttgatatcactgactacactactgatgag
acattaagaaaggctatttctaacatcaggcaacttggaggcggcacttacaccggggaa
gccctggatttcatattacaaataataaagaagggaagggagcagagaataaataaggta
ccctgttacctcattgtgttgactgatgggatgtccatggatgacgttctggaaccagct
gagaaactaagggctgaaaacattgctgttcatgcaatcggcattggggaggctaacaga
acacaactgcaacaaattgctggaaaagaagaaagggtcagctttgggcagaactttgat
tctttaaaaaacataaaaaatgaagttttgcacagcatctgcactgagaaaggatgtgaa
gacatgaaggctgacatcatgtttctggtggatagttctggcagtataggacctgaaaat
tttaggacaatgaaaagcttcatgaaaaacctgttagctaagattcagattggtttggac
aaaacccgaattggtgtcgttcagttcagcgatgttacgaaggaagaattcaaacttgat
acatactttacacaaaaagaaatttctgatgccatagagagaatgtctcccatcgagcaa
aacactttgactggaaaggcactaacttctatagagccgtacttcaccgagtccaagggg
gcccgatcaatggtcagaaagtttctcatccttatcacggatggagaagcccaagatgat
gtgagaaacccagcaaaagttcttcgggacaaaggtgtggtcatcttcgctgtgggggta
ttcagggccaacaggactcagctagaggaaatcagtggggacagcagcctggttttccaa
gttgagagtttcagtgatctacaggaaatagagaataaactcatcttccgtgtgtgcgct
cttcatgattgtaaaaggattaaagagttagatgttgtgtttgtgctggaccattcaagc
agcatccaaccccgagaccaagaaagcatgatcaacctcacaatgcatttggtgaagaaa
tcggatgtcggcccaaacagggttcagtttggagctctccgatactccaatgaacctgat
attatcttctaccttaactcaaacagatcagccatcatggagtatctgaggtcactcagt
gccaaaggaggggatacctacaccgctaaggctctggaacgtgccaacatcctgttcacg
gaggaacatggcagtcgaatcaagcaaaatgtgaagcagatgctgataatcatcacagat
gggaaatcccatgaccatattcacctcagtgacaaggcttcgaagttaagggccaaaggc
atcatcatctacgctgtgggtgtaggagaggccaaccaagaagaactggagactatggca
gggaataaacactatactatccatgtcagtaattttgacagtctgaaagatgtttatcag
cctctgcaagagagtatgtgtaccaatgcccaagagagctgtagcatttcagaagctgac
gtgattttcttttgtgatggctctgacatggtttctgattcagactttgttaccatgaca
accttcttgtccgacttaattgataattttgacattgagtctcaaaggataaaaattggg
atggcccagtttggaagccgctaccaggaaattattgaattacaaaactctctgaataaa
acgcagtggaagtctcaaattcaaacgaccaccaagagcaaagggcttccacgaatggac
ttggcccttaagaaagtaaagtttatgtttgagcagtctgttggtggaagaagaaacgct
ggtgtccctcagactttgatggttatcacatctgcggatccccggcatgacgtggctgag
gcagtgaaaaccctgagagaaagtggcatttgtattatggtcttgggcctaggaaatgtc
cacaaggaacggctcctgccgataacgggaaattctgaaaaaattatcacttttcaagac
tttgataaattaaagaatgtggatgtgaagaaaagaatggtccgtgaaatctgccagagt
tgcagcaaaaccaactgcttcctggacattgtggtcggcttcgacatttccactcaccgg
caggggcagctgttgttccacggccacccccggctggaatcatatctcccaggcatctta
gaggacatcacctccatcaggggcgtgagctgtggggcaggagcagaggtgcaggtgagc
gtggccttcaaagtgaacagtgaccagaatttcaccaccaagttccacatctacaagaaa
acagtatttgacaggctactggaactcaccgtcaatggagcaactcacctgaatgcacag
ttcctgcagtccatgtgggccacgtttaacgacacatctgcatcccgaggacaggtgcta
ctcatcttttcagatggccttgggggtgaaagcaaagcaatgcttgaagatcaatcggac
aggctcagaaaagcagggcttgatgctctgctggtggtgtccttaaatgcacccattcat
aatgagttttccagctttgaatttggaaaaggattcgactacaggactccattgaccatt
gggaccagagaactgggcaaaatgctatcacagtatctgggtaacattgcagaaaggact
tgctgctgtacattttgcaagtgttcagggactccaggccctccagggatccgaggacca
caagcattgaagggttttcaaggtctgaaaggcagcagagggcacaggggagaggatgga
gaccctggaatacgaggagacactggaccccaaggaagtagagggatcacaggatgtcca
ggggagcgaggtctgaagggagccaaaggattttctggatataagggagaacgtggagat
gatggggttgatggactcgatggggaagagggcttccatgggtttcctggaaaaaaagga
gaaaaaggtgatcaaggatcccagggcagcccaggttccagaggcccccctgggggatat
ggggagaagggctttccaggagatcctggtaatccaggacaaaacaataacatcaaagga
caaaagggctccaaaggagaacaaggaagacaaggtaaaactggccagaaaggaacacaa
ggcagtcctagtcccaaaggaagcaggggaagagaaggccagaggggggtccaggggccc
tcgggagaaccagggaaccctggacctgaaggtgcaccaggaaccgaaggattcataggc
ctccaggggctacatggacttcctggcagaaaaggagagaaaggaagagaggggctcaaa
ggacctcagggtgctcctgggccagcaggagataaagggagtgttggaaggcctggcctt
ttggggagaaagggagagcctggaattcctggagacccagggccagtgggtccaactgga
cagcgaggaaagcagggtgattatggcatcccaggctatggtcgtgtgggaaaaaaagga
gtaaagggcccaagaggattccctggagatatagggcaaaagggagatgttggtgatcct
ggaattcctggggggcctggacccaaaggatttagaggattaacagtcactgcaggcttg
aaaggtgaagaaggctctaaaggaccccagggccctcctggacggagaggccctaaaggc
atggcagggcagccaatatattcccaatgtgacctaatccagttcatgcggaatcatagt
ccttgttgggaagaaaagtgtccagtgtatccaacggagctagtatttgctctggaccag
tcctacgatatcacagagcagagatttaatgaaacgagggacatcatcacttctattgtc
aatgaccttcacatctgggaaaataactgccctgtgggagcaagagttgtcgtggtttcc
tacaactcaggtaccagctacctcatccgtgggtctgactaccgtaacaagaagcagctc
cttcagcttctttcccaaataaaatatcagaactccggagaagtccgagacatgggtaat
gcgatgaggtttgtggcccggaatatcttcaagcggacattttcaggacccaatgtgcgg
agagttgctgtgttttttagcaatggacaagctaccagtagttcgtccatcatcacagcc
accatggagtttagtgccctggacatcagtcctgcagtctttgcttataatgaaagagtt
ttccttgatgaggcttttgggtttgacaacactggaacatttcaagtgcttcctgttcct
ctaaatggagaatatgaaccgttagaaaaacttcggcgctgtaccctttgctatgataaa
tgttttccagatgcctgcagcaaaaagattttcttacctgaagatacatatatggatgta
gcctttctcttagataattctcggaatatagcaagtgatgagtttaagaatgtgaaagcc
ttggtgagctcaatgcttgataactttgacattgcttcataccctttaatctccgactct
ggtgataggattgctttgttgagctattctccttgggataggagaaagaaggatgcaata
aaaacagagtttgagtttacaacttatgacaatcaagttctaatgaagaaccacattcag
aactacctccaacagctaaatggagaagccaccattggccatgccctactgtggaccatg
gagaatctcttcccaggaacacccaacctgagaaaacacagggtcatctttgtggtctct
gctggagaaaaccatgagagaaaggaattcttaaggaagatggctctgagggccaagtgt
caaggctatgtcatatttgtgatttccctgggctctacacaagagggggacatggaggaa
ctagccagctatccacttgatcaccatctgatacagcttgggagaactcataaaccaaat
ctggattatattgtgaagtttttaaagccatttgtatactcagttagacgaggattcaat
cagtacccaccaccaacgcttgcgaatgcctgcagactcatcgattcagaagaggataat
ccaaacactggtctcctatttgcctctgaggcacatgagatttcttcgggagaagacagc
ttcttaggccaggaattaagtgccgcaaaagattcaccttttgtgatggaggacagtgga
aatgaccatttgatttatactccaagtcaaaagattgtgccacagaaattaatgaccaaa
tatgaaaaatatcaggattctgaagttattgcaagtctcacttctgaacatgagactggt
ggcagaagagaagaaccaggtcttacttctgaacttagagatgcttctcttcaagaatat
tacatggatgtggcttttctcatagatgcttcccgaaaagtaggaaatgatgagtttaag
gaagtgaaagcttttatatcctcagtgcttgattactttcacctggccccagatccacta
acctccaccttgggagacagagtggctgtcctgacctactctcctccaggctatatgccc
aacacagaagaatgtcctgtctacctggaatttgatttggttacttataacagtatgcac
caaatgaaacatcatctccaagactctcttcagcagctcaatggagatgttttcattggc
catgctctgcagtggacaattgacaatgtttttataggaacccccaacctgagaaaaaac
aaagttatctttgttatatctgctggtgaaaccaatcctttagacaaggaagtcttaaga
aatgtatctctgagagccaagtgtcaaggatactccatatttgtgttttcctttggtcct
ctacacaatgacaaggaattagaacaattagccagccaaccactggaccatcacttagtc
cagcttggccgaacccacaagccagatatgaactatatcatcaaatttgtcaagccattt
gttcattcagtcagacgtgccatcaacaaatatccccctgcagatctgagacccaagtgt
gttgacatcacctctcccaacccagagaatgatgacacagaaaacactgtattccttctt
cctgaggtatatgaaatagagacggagaacagcgagccatggggtggattcggttcccag
cagcagcatttatttgaattaggggacagtcatgataatggttctgggatcattgatgat
ttgatccagaagttaagcatgttctttttaactgaggaactgatgatgaaagacgaggaa
gaggcacattcagaagaaattacagctgcagaaaatgacagacaataa
DBGET
integrated database retrieval system
