Sus scrofa (pig): 100516158
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Entry
100516158 CDS
T01009
Symbol
SAMD4B
Name
(RefSeq) protein Smaug homolog 2 isoform X1
KO
K27396
protein Smaug
Organism
ssc
Sus scrofa (pig)
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssc03019
]
100516158 (SAMD4B)
Messenger RNA biogenesis [BR:
ssc03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
100516158 (SAMD4B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SAM_1
PHAT
SAM_2
Motif
Other DBs
NCBI-GeneID:
100516158
NCBI-ProteinID:
XP_020950025
Ensembl:
ENSSSCG00000010706
Vega:
OTTSUSG00000002057
LinkDB
All DBs
Position
6:48002726..48046563
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AA seq
742 aa
AA seq
DB search
MMFRDQVGILAGWFKGWNECEQTVALLSLLKRVTRTQARFLQLCLEHSLADCNDIHLLES
EANSAAIVSQWQQESKEKVVSLLLSHLPLLQPGNTEAKSEYMRLLQKVLAYSIESNAFIE
ESRQLLSYALIHPATTLEDRNALALWLSHLEERLASGFRTRPEPSYHSRQGSDEWGGPAE
LGPGEAGPGWQDKPPRENGHVPFHPPSSVPPAINSIGSNANAGLPCQIHPSPLKRSMSLI
PTSPQAPGEWPSPEELVARATFTTPDHAPLSPQSSVASSGSEQTEEQGSSRNTFQEDGSG
MKDVPSWLKSLRLHKYAALFSQMSYEEMMTLTEQHLESQNVTKGARHKIALSIQKLRERQ
SVLKSLEKDVLEGGNLRNALQELQQIIITPIKAYSVLQATVAAGATTTPPAKDGGRGEPP
LPGAESPLAHPGTDKGSEAKDPPAAESFPPPPAPASTDGSEPAPAPVADGDIPSQFTRVM
GKVCTQLLVSRPDEENITSYLQLIEKCLTHEAFTETQKKRLLSWKQQVLKLLRTFPRKAA
LEMQNYRQQKGWAFGSNSLPIAGSVGMGVARRTQRQFPMPPRALPPGRMGLLSPSGIGGI
SPRHALTSPSLGGQGRQVSWLEAEGLVLLGLGVMVPEIMCVHLFVSEPSLEGRELLCQRH
HSWVLASSPLTQCFLSPRALCRTCGSPTPEAVTACRARAAALCSAPTRSRSTHRPRPFSC
SLQTVRSLGLTWRSIPLWSLCV
NT seq
2229 nt
NT seq
+upstream
nt +downstream
nt
atgatgttccgagaccaggtgggcatccttgctggctggttcaagggctggaatgagtgt
gaacagacagtggccctgctgtcacttctgaagcgagtcacccgcacccaggcccgcttt
ctgcagctctgcctggagcactcactggcagactgcaatgacattcacctgctggagtcg
gaggccaacagtgctgccatcgtcagccagtggcagcaggagtccaaagagaaggtggtg
tccctcctgctgtcccacctgcccctgctccagccgggcaacacagaggccaagtcggag
tacatgaggctgctgcagaaggtgctggcctactcgattgagagcaatgccttcatcgag
gagagccgccagctgctctcctatgccctcatccacccggccaccacactggaggaccgc
aatgctctggccctctggctaagccacttggaagagcggctagctagcggcttccgcacc
cggcctgagcccagctaccactcacgccagggctctgatgagtgggggggccctgcagag
ctgggccctggggaggcaggaccaggctggcaggacaaaccaccccgggaaaatggacac
gtgcccttccacccacccagctcagtgccgccagccatcaacagtattgggagcaacgca
aatgcaggtctcccctgccaaatccacccaagcccactgaagcgctccatgtcgctcatc
cccacgagcccccaggcccctggcgagtggccgagtccagaggagcttgtggcccgggct
actttcaccacgccagaccacgcgcctctctcaccccaaagcagcgtggcctcctctggc
agtgagcagacggaggagcagggctccagccggaacactttccaggaggacggcagtggc
atgaaagacgtgccctcgtggctcaagagcctccgcttgcacaagtacgcggccctcttc
tcacagatgagctatgaggagatgatgacactgactgagcagcacttggaatctcagaat
gtcaccaaaggtgcccgccacaagatagccctgagcatccagaagctgcgtgaaaggcag
agcgtcctcaaatccctggaaaaggatgtgctggaaggtggaaatctgcgaaacgctctg
caggagctgcaacagatcatcatcaccccgatcaaggcctacagtgtcctccaggccact
gtggctgctggtgccaccaccacccctcctgccaaggatgggggccggggggagccaccg
ctgccaggtgctgagtctcccctggctcaccccggcacagacaagggcagtgaggccaag
gaccctccagctgcagagagcttccctcctccaccagctccagcctccactgatggcagt
gagccagccccggctcccgtcgctgacggagacatccccagccagtttacacgggtgatg
ggcaaagtgtgcacccagctgctggtgtcccgaccagacgaggagaacatcaccagttac
ctccagctcatcgaaaagtgcctgactcatgaggctttcacggagacgcagaagaaacgg
ctgctgtcctggaaacagcaagtgctaaagctcctccggaccttcccacgcaaagctgca
ctagagatgcagaactaccggcagcaaaaaggctgggcattcggctccaactcactcccc
atagctggctctgtggggatgggggtggcccggcggacccagcgacagttcccaatgcct
ccccgggcccttccacctggcaggatgggccttctgagcccctcgggcattgggggcatc
tccccccgacatgccctcaccagccccagccttgggggccagggccgacaggtgagctgg
ctggaagcagagggcctggtacttttggggttgggggtgatggtgcctgagataatgtgt
gtccatctctttgtgtctgagcccagcttggaggggagggaactcctctgccaacgccac
cactcttgggtcttggcatcttccccactcacccagtgctttctctctcctcgtgcccta
tgcagaacctgtggttcgccaaccccggaggcagtaacagcatgccgagccagagccgca
gctctgtgcagcgcacccactcgctcccggtccactcatcgccccaggccattctcatgt
tccctccagactgtccggtccctgggcctgacctggagatcaatcccactctggagtctc
tgtgtctga
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