Sus scrofa (pig): 100516258
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Entry
100516258 CDS
T01009
Symbol
SPTBN1
Name
(RefSeq) spectrin beta chain, non-erythrocytic 1 isoform X1
KO
K06115
spectrin beta, non-erythrocytic 1/4/5
Organism
ssc
Sus scrofa (pig)
Pathway
ssc04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
100516258 (SPTBN1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
ssc04812
]
100516258 (SPTBN1)
Cytoskeleton proteins [BR:
ssc04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Cross-linking proteins
100516258 (SPTBN1)
Intermediate filaments
Intermediate filament-binding proteins
100516258 (SPTBN1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Spectrin
CH
PH_9
PH
CAMSAP_CH
SOS1_NGEF_PH
PH_11
Motif
Other DBs
NCBI-GeneID:
100516258
NCBI-ProteinID:
XP_020943877
UniProt:
A0A8D0Y4P2
LinkDB
All DBs
Position
3:complement(86585225..86784316)
Genome browser
AA seq
2364 aa
AA seq
DB search
MTTTVATDYDNIEIQQQYSDVNNRWDVDDWDNENSSARLFERSRIKALADEREAVQKKTF
TKWVNSHLARVSCRITDLYTDLRDGRMLIKLLEVLSGERLPKPTKGRMRIHCLENVDKAL
QFLKEQRVHLENMGSHDIVDGNHRLTLGLIWTIILRFQIQDISVETEDNKEKKSAKDALL
LWCQMKTAGYPNVNIHNFTTSWRDGMAFNALIHKHRPDLIDFDKLKKSNAHYNLQNAFNL
AEQHLGLTKLLDPEDISVDHPDEKSIITYVVTYYHYFSKMKALAVEGKRIGKVLDNAIET
EKMIEKYESLASDLLEWIEQTIIILNNRKFANSLVGVQQQLQAFNTYRTVEKPPKFTEKG
NLEVLLFTIQSKMRANNQKVYMPREGKLISDINKAWERLEKAEHERELALRNELIRQEKL
EQLARRFDRKAAMRETWLSENQRLVSQDNFGFDLPAVEAATKKHEAIETDIAAYEERVQA
VVAVARELEAENYHDIKRITARKDNVIRLWEYLLELLRARRQRLEMNLGLQKIFQEMLYI
MDWMDEMKVLLLSQDYGKHLLGVEDLLQKHALVEADIGIQAERVRGVNASAQKFATDGEG
YKPCDPQVIRDRVAHMEFCYQELCQLAAERRARLEESRRLWKFFWEMAEEEGWIREKEKI
LSSDDYGKDLTSVMRLLSKHRAFEDEMSGRSGHFEQAIKEGEDMIAEEHFGSEKIRERIA
YIREQWAHLEQLSAIRKKRLEEASLLHQFQADADDIDAWMLDILKIVSSNDVGHDEYSTQ
SLVKKHKDVAEEIANYRPTIDSLHEQAGALPQEHAESPDVRGRLAGIEERYKEVAELTRL
RKQALQDTLALYKMFSEADACELWIDEKEQWLNNMQIPEKLEDLEVIQHRFESLEPEMNN
QASRVAVVNQIARQLMHSGHPSEKEIKAQQDKLNTRWSQFRELVDRKKDALLSALSIQNY
HLECNETKSWIREKTKVIESTQDLGNDLAGVMALQRKLTGMERDLVAIEAKLSDLQKEAE
KLESEHPDQAQAILSRLAEISDVWEEMKTTLRNREASLGEASKLQQFLRDLDDFQSWLSR
TQTAIASEDMPNTLTEAEKLLTQHENIKNEIDNYEEDYQKMRDMGEMVTQGQTDAQYMFL
RQRLQALDTGWNELHKMWENRQNLLSQSHAHQQFLRDTKQAEAFLNNQEYVLAHTEMPTT
LEGAEAAIKKQEDFMTTMDANEEKINAVVETGRRLVSDGNINSDRIQEKVDSIDDRHRKN
REAASELLMRLKDNRDLQKFLQDCQELSLWINEKMLTAQDMSYDEARNLHSKWLKHQAFM
AELASNKEWLDKIEKEGMQLISEKPETEAVVKEKLTGLHKMWEVLESTTQTKAQRLFDAN
KAELFTQSCADLDKWLHGLESQIQSDDYGKDLTSVNILLKKQQMLENQMEVRKKEIEELQ
SQAQALSQEGKSTDEVDSKRLTVQTKFMELLEPLNERKQNLLASKEIHQFNRDVEDEILW
VGERMPLATSTDHGHNLQTVQLLIKKNQTLQKEIQGHQPRIDDIFERSQNIVADSSSLSA
EAIRQRLADLKQLWGQLIEETEKRHRRLEEAHRAQQYYFDAAEAEAWMSEQELYMMSEEK
AKDEQSAVSMLKKHQILEQAVEDYAETVHQLSKTSRALVADSHPESERISMRQSKVDKLY
AGLKDLAEERRGKLDERHRLFQLNREVDDLEQWIAEREVVAGSHELGQDYEHVTMLQERF
REFARDTGNIGQERVDTVNHMADELINSGHSDAATIAEWKDGLNEAWADLLELIDTRTQI
LAASYELHKFYHDAKEIFGRIQDKHKKLPEELGRDQNTVETLQRMHTTFEHDIQALGTQV
RQLQEDAARLQAAYAGDKADDIQKRENEVLEAWKALLDACEGRRVRLVDTGDKFRFFSMV
RDLMLWMEDVIRQIEAQEKPRDVSSVELLMNNHQGIKAEIDARNDSFTTCIELGKSLLAR
KHYASEEIKEKLLQLTDKRKEMIDKWEDRWEWLRLILEVHQFSRDASVAEAWLLGQEPYL
SSREIGQSVDEVEKLIKRHEAFEKSAATWDERFSALERLTTLELLEVRRQQEEEERKRRP
PSPEPSTKVSEETESQQQWDTSKGEQVSQNGLPTEQGSPRMAETVDTSEMVNGAAEQRTS
SKESSPIPSPTSDRKAKTSLPAQSAATLPARTQETPSAQMEGFLNRKHEWEAHNKKASSR
SWHNVYCVINNQEMGFYKDAKTAASGIPYHSEVPVSLKEAICEVALDYKKKKHVFKLRLN
DGNEYLFQAKDDEEMNTWIQAISSAISSDKHEVSASTQSTPASSRAQTLPTSAVTITSES
SPGKREKDKEKDKEKRFSLFGKKK
NT seq
7095 nt
NT seq
+upstream
nt +downstream
nt
atgacgaccacagtagccacagactacgacaacattgagatccagcagcagtacagcgat
gtcaacaaccgctgggacgtggacgactgggataatgagaacagctccgcgaggctcttt
gagcgatcgcgcatcaaggctctggcagatgagcgcgaagccgtgcaaaagaagaccttt
accaagtgggtcaactcccacctcgcccgagtgtcctgccggatcacagacctgtacacc
gaccttcgagatggacggatgctcatcaagctgctggaggtcctctctggagagagactg
cccaaacccaccaagggacgaatgcgcatccactgtctggagaatgtggacaaagccctt
cagttcctgaaggagcagagagtccatctggagaacatggggtcccatgacatcgtggat
gggaaccaccggctgaccctcggcctcatctggaccatcatcctgcggttccagatccag
gacatcagtgtggaaactgaagacaacaaagagaagaaatctgccaaggatgcattgctg
ttgtggtgccagatgaagacagctgggtaccccaacgtcaacattcacaatttcactacc
agctggagggacggcatggccttcaacgccctgatacacaagcacaggcctgacctgata
gattttgacaaactgaagaaatccaatgcacactacaatctgcagaatgcgtttaacttg
gcggagcagcaccttggcctcaccaaactgttggaccctgaagatatcagcgtggaccac
cccgatgagaagtccattatcacttacgtggtgacttattaccactacttctcaaagatg
aaggccttggctgttgaaggaaagcgaattggaaaggtgcttgacaatgctattgaaact
gaaaaaatgattgaaaagtatgaatcccttgcctctgatcttctggagtggattgaacaa
accatcattattttgaacaatcgcaaatttgccaactcgctggttggggtccaacaacag
cttcaggccttcaacacttaccgcactgtggagaaaccccccaaatttactgagaagggg
aacttggaagtcctgcttttcactattcagagcaagatgagggccaataaccagaaggtc
tacatgccccgggaggggaagctcatctctgatattaacaaggcctgggaacgactggaa
aaagcagagcacgagagagaactggccctgcggaacgagcttattcgacaggagaaactg
gaacagctcgcccgcagattcgaccgcaaggcagctatgagagagacctggctgagcgag
aaccagcgtctggtgtcccaggacaactttggatttgaccttcctgctgtcgaggccgcc
acgaaaaagcacgaggccattgagacggacattgccgcatacgaggagcgtgtgcaggct
gtggttgccgtggccagggagctggaagcggagaactaccatgacatcaagcgcatcacg
gcaaggaaggacaacgtcatccggctctgggaatacctgctggaactgctcagggcccgg
aggcagcgcctcgagatgaacctgggcctgcagaagatattccaggaaatgctgtacatt
atggactggatggatgagatgaaggtgctattactgtctcaggactatggcaaacacttg
ctgggcgtggaagacctgttgcagaagcatgccctggttgaagcggacattggcatccag
gcagagcgggtgagaggtgtcaatgcctctgcccagaagtttgcaacagacggggaaggt
tacaagccctgcgacccccaggtgatccgagaccgcgtggcccacatggagttctgttat
caagagctttgccagttggcagcagagcgccgggcccgcctggaagagtcccggcgcctc
tggaagttcttctgggagatggcggaggaggaaggctggatccgggagaaggagaagatc
ctgtcctctgacgactacggcaaggacctcaccagtgtcatgcgcctgctcagcaagcac
cgggcattcgaggacgagatgagcggccgcagcggtcacttcgagcaggccatcaaagag
ggcgaggacatgatcgctgaggagcactttgggtcggagaagatccgggagcggatcgcc
tacatccgcgagcagtgggcccacctggagcagctctcggccatccgcaagaagcgcctg
gaggaggcctcactgctgcaccagttccaggcggatgccgacgacatcgacgcctggatg
ctggacatcctcaagatcgtctccagcaacgacgtgggccacgatgagtactccacccag
tctctggtcaagaagcacaaggatgtggccgaggagatcgccaactaccggcccaccatc
gactcgctgcacgagcaggccggtgccctcccccaggagcacgccgagtcccccgatgta
cggggccggctcgcgggcatcgaggagcgctacaaggaggtggctgaactgacgcggctg
cggaagcaggcgctgcaggacaccctggccctgtacaagatgttcagcgaggctgatgcc
tgcgagctctggatcgatgagaaggagcagtggctcaacaacatgcagatcccagagaag
ctggaggacctggaggtcatccagcacagattcgagagcttagaaccagagatgaacaac
caagcttcccgagtggcggtggtgaatcagattgcacggcagctgatgcacagcggccac
ccaagcgagaaggagatcaaggcccagcaggacaagctcaacacgaggtggagtcagttc
agggagctggtggaccggaagaaggatgcactcctctccgccctgagcatccagaactac
cacctcgagtgcaatgaaaccaagtcctggatccgggaaaagaccaaggtcatcgaatcc
acccaggacctgggcaatgacctggctggcgtcatggccttgcagcgcaagctgaccggc
atggagcgggacctggtggccatcgaggcgaagctgagcgacctgcagaaggaggctgag
aagctggagtccgagcaccccgaccaggcccaggccatcctgtctcggctggccgagatc
agcgacgtgtgggaggagatgaaaaccacgctgaggaaccgcgaggcctccctgggagag
gccagcaagctgcagcagttcctgcgggacctggacgacttccagtcctggctctccagg
acccagacggccatcgcctcggaggacatgcccaacaccctgaccgaagccgagaagctc
ctcacacagcatgagaacatcaaaaacgagatcgacaactacgaggaggactaccagaag
atgagggacatgggtgagatggtcacgcagggccagaccgacgcccagtacatgtttctg
cggcagcggctgcaggccctggacaccgggtggaatgagctccacaagatgtgggagaac
agacagaacctcctttcccagtcccacgcccaccagcagttcctgcgggacaccaagcag
gctgaagcctttctcaacaaccaggagtatgtcttggcccatactgagatgcccaccacc
ttggaaggggctgaagcagctattaaaaaacaagaggacttcatgaccaccatggatgcc
aacgaggagaagatcaatgcagtcgtggagaccggccgcaggctggtgagcgatgggaac
atcaactcggatcgcatccaagagaaggtggactccatcgatgacagacataggaagaat
cgcgaagcagcaagtgagcttctgatgagactgaaggacaacagggatcttcagaaattc
ctgcaagattgtcaagagttgtctctctggatcaatgaaaagatgcttacagcccaggac
atgtcttatgatgaagccagaaatctgcacagtaaatggttaaaacatcaagcatttatg
gcagaactcgcatccaacaaagaatggcttgacaaaattgagaaggaaggaatgcagctc
atttcagaaaagccggagacggaagccgtggtaaaggagaaactcacaggtttgcataaa
atgtgggaagtccttgaatccaccacgcagaccaaggcccagcggctcttcgatgcaaac
aaggctgaactcttcacccagagctgtgcagacctggacaaatggctgcacggcctggag
agtcagattcaatctgatgattacggcaaagacctcaccagtgtcaacatcctgctgaaa
aagcaacagatgctggagaatcagatggaggtgcggaagaaggagattgaggagctccag
agccaggcacaggccctgagccaggaggggaagagcacagacgaggtggacagcaagcgg
ctcaccgtgcagaccaagttcatggagctgctggagcccctaaatgagaggaagcagaac
ctgctggcctccaaagagatccatcagtttaaccgggacgtggaggacgagatcttgtgg
gttggagagaggatgcctttggcaacttccacggatcatggccacaatctccagaccgtg
cagctgttaataaagaaaaatcagaccctccagaaggagatccaggggcaccagcctcgc
attgatgacattttcgagaggagccagaacatcgttgccgacagcagcagcctcagtgcc
gaggccatccggcagaggctggccgacctgaagcagctgtggggccagctcatcgaggag
acggagaagcggcaccggcggctggaggaggcacacagggcccagcagtactacttcgat
gctgccgaggccgaggcgtggatgagtgagcaggagctgtacatgatgtctgaggagaag
gccaaggatgagcagagtgcagtctctatgttgaagaagcaccagattctggaacaagca
gtggaggactacgcagagacggtacatcagctctctaagaccagccgggccctggtagcc
gacagccatcctgaaagcgagcgcatcagcatgcggcaatccaaggtggacaagctgtac
gcgggcctcaaggacctggccgaggagaggaggggcaagctggacgagaggcaccggctg
ttccagctcaaccgcgaggtggacgacctggagcagtggattgccgagagggaggtggtc
gcagggtctcacgagttggggcaggactacgagcatgtcacgatgctacaagaacggttc
cgggagtttgcccgagacacgggaaacatcgggcaggagcgcgtggacactgtcaatcac
atggcagatgagctcatcaactccggacattcagatgctgccaccattgccgagtggaag
gacgggctcaacgaagcctgggcagacctcctggagctcattgacacgagaacacagatc
cttgccgcctcctacgaactgcacaagttttaccacgatgccaaggagatctttggacgc
atccaggacaaacacaagaaactccccgaggagctcgggagagatcagaacacagtggag
accttacagagaatgcataccacatttgagcatgacatccaggctctgggcactcaggtg
aggcagctgcaggaggacgcagcccgcctccaggcagcctatgcaggtgacaaggctgac
gacatccagaagcgggagaacgaggtcctagaagcctggaaggccctgctggatgcctgt
gagggccgcagggtgcggctggtggacacgggggacaagttccgcttcttcagcatggtg
cgcgacctcatgctatggatggaggatgtcatccggcagatcgaagcccaggagaagcca
agggatgtatcatctgttgaactcttaatgaataatcatcaaggtatcaaagctgaaatc
gatgctcgaaatgacagtttcacaacctgcattgaacttgggaagtcgctgctggcgagg
aagcactacgcgtcagaggagatcaaggagaagttactgcagttgacggacaagagaaaa
gaaatgattgacaaatgggaagaccgatgggagtggttaagactgatcttggaggtccat
cagttctcaagggacgccagtgtggccgaggcctggctgcttggacaggagccgtaccta
tccagccgagaaataggccagagcgtggacgaggtggagaagctcatcaagcgccatgag
gcttttgaaaagtctgcagcgacctgggacgagaggttctccgccctggaacggttgacg
acgttggagctactggaagtgcgcagacagcaagaggaagaggagaggaagaggcggccg
ccttctcccgagcccagcacaaaggtttccgaggagaccgagtcccagcagcagtgggat
acttcaaaaggagagcaagtttcccagaatggtttgccgaccgagcagggatctccacgg
atggcagaaacggtggacacgagtgaaatggtcaacggcgccgcagaacagaggacaagc
tcgaaggagtccagccccatcccctccccaacctccgaccgcaaagccaagacctccctc
cctgcccagagtgccgccaccttgccggccagaacccaggagacgccctcggcccagatg
gaaggcttcctgaatcggaagcacgagtgggaggcccacaacaagaaagcctcaagcagg
tcctggcacaatgtttactgtgtcataaataaccaagaaatgggtttctacaaagacgca
aagacagctgcttccggaattccctaccacagcgaggtccctgtgagtttgaaagaagcc
atctgtgaagtggccctcgattacaaaaagaagaaacacgtgttcaagctaagactaaat
gatggcaacgagtacctcttccaagccaaagatgatgaggaaatgaacacgtggatccag
gccatctcctccgccatctcctctgataaacacgaggtgtccgccagcacccagagcacg
ccagcatccagccgggctcagaccttgcccaccagcgccgtgaccatcaccagcgagtcc
agtcccggcaaacgggagaaggacaaagagaaagacaaggaaaagaggttcagccttttt
ggcaagaagaagtga
DBGET
integrated database retrieval system
