Sus scrofa (pig): 100516258
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Entry
100516258 CDS
T01009
Symbol
SPTBN1
Name
(RefSeq) spectrin beta chain, non-erythrocytic 1 isoform X1
KO
K06115
spectrin beta, non-erythrocytic 1/4/5
Organism
ssc
Sus scrofa (pig)
Pathway
ssc04517
IgSF CAM signaling
ssc04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
100516258 (SPTBN1)
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
100516258 (SPTBN1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
ssc04812
]
100516258 (SPTBN1)
Cytoskeleton proteins [BR:
ssc04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Cross-linking proteins
100516258 (SPTBN1)
Intermediate filaments
Intermediate filament-binding proteins
100516258 (SPTBN1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Spectrin
CH
PH_9
PH
CAMSAP_CH
SOS1_NGEF_PH
PH_11
Motif
Other DBs
NCBI-GeneID:
100516258
NCBI-ProteinID:
XP_020943877
LinkDB
All DBs
Position
3:complement(86585225..86784316)
Genome browser
AA seq
2364 aa
AA seq
DB search
MTTTVATDYDNIEIQQQYSDVNNRWDVDDWDNENSSARLFERSRIKALADEREAVQKKTF
TKWVNSHLARVSCRITDLYTDLRDGRMLIKLLEVLSGERLPKPTKGRMRIHCLENVDKAL
QFLKEQRVHLENMGSHDIVDGNHRLTLGLIWTIILRFQIQDISVETEDNKEKKSAKDALL
LWCQMKTAGYPNVNIHNFTTSWRDGMAFNALIHKHRPDLIDFDKLKKSNAHYNLQNAFNL
AEQHLGLTKLLDPEDISVDHPDEKSIITYVVTYYHYFSKMKALAVEGKRIGKVLDNAIET
EKMIEKYESLASDLLEWIEQTIIILNNRKFANSLVGVQQQLQAFNTYRTVEKPPKFTEKG
NLEVLLFTIQSKMRANNQKVYMPREGKLISDINKAWERLEKAEHERELALRNELIRQEKL
EQLARRFDRKAAMRETWLSENQRLVSQDNFGFDLPAVEAATKKHEAIETDIAAYEERVQA
VVAVARELEAENYHDIKRITARKDNVIRLWEYLLELLRARRQRLEMNLGLQKIFQEMLYI
MDWMDEMKVLLLSQDYGKHLLGVEDLLQKHALVEADIGIQAERVRGVNASAQKFATDGEG
YKPCDPQVIRDRVAHMEFCYQELCQLAAERRARLEESRRLWKFFWEMAEEEGWIREKEKI
LSSDDYGKDLTSVMRLLSKHRAFEDEMSGRSGHFEQAIKEGEDMIAEEHFGSEKIRERIA
YIREQWAHLEQLSAIRKKRLEEASLLHQFQADADDIDAWMLDILKIVSSNDVGHDEYSTQ
SLVKKHKDVAEEIANYRPTIDSLHEQAGALPQEHAESPDVRGRLAGIEERYKEVAELTRL
RKQALQDTLALYKMFSEADACELWIDEKEQWLNNMQIPEKLEDLEVIQHRFESLEPEMNN
QASRVAVVNQIARQLMHSGHPSEKEIKAQQDKLNTRWSQFRELVDRKKDALLSALSIQNY
HLECNETKSWIREKTKVIESTQDLGNDLAGVMALQRKLTGMERDLVAIEAKLSDLQKEAE
KLESEHPDQAQAILSRLAEISDVWEEMKTTLRNREASLGEASKLQQFLRDLDDFQSWLSR
TQTAIASEDMPNTLTEAEKLLTQHENIKNEIDNYEEDYQKMRDMGEMVTQGQTDAQYMFL
RQRLQALDTGWNELHKMWENRQNLLSQSHAHQQFLRDTKQAEAFLNNQEYVLAHTEMPTT
LEGAEAAIKKQEDFMTTMDANEEKINAVVETGRRLVSDGNINSDRIQEKVDSIDDRHRKN
REAASELLMRLKDNRDLQKFLQDCQELSLWINEKMLTAQDMSYDEARNLHSKWLKHQAFM
AELASNKEWLDKIEKEGMQLISEKPETEAVVKEKLTGLHKMWEVLESTTQTKAQRLFDAN
KAELFTQSCADLDKWLHGLESQIQSDDYGKDLTSVNILLKKQQMLENQMEVRKKEIEELQ
SQAQALSQEGKSTDEVDSKRLTVQTKFMELLEPLNERKQNLLASKEIHQFNRDVEDEILW
VGERMPLATSTDHGHNLQTVQLLIKKNQTLQKEIQGHQPRIDDIFERSQNIVADSSSLSA
EAIRQRLADLKQLWGQLIEETEKRHRRLEEAHRAQQYYFDAAEAEAWMSEQELYMMSEEK
AKDEQSAVSMLKKHQILEQAVEDYAETVHQLSKTSRALVADSHPESERISMRQSKVDKLY
AGLKDLAEERRGKLDERHRLFQLNREVDDLEQWIAEREVVAGSHELGQDYEHVTMLQERF
REFARDTGNIGQERVDTVNHMADELINSGHSDAATIAEWKDGLNEAWADLLELIDTRTQI
LAASYELHKFYHDAKEIFGRIQDKHKKLPEELGRDQNTVETLQRMHTTFEHDIQALGTQV
RQLQEDAARLQAAYAGDKADDIQKRENEVLEAWKALLDACEGRRVRLVDTGDKFRFFSMV
RDLMLWMEDVIRQIEAQEKPRDVSSVELLMNNHQGIKAEIDARNDSFTTCIELGKSLLAR
KHYASEEIKEKLLQLTDKRKEMIDKWEDRWEWLRLILEVHQFSRDASVAEAWLLGQEPYL
SSREIGQSVDEVEKLIKRHEAFEKSAATWDERFSALERLTTLELLEVRRQQEEEERKRRP
PSPEPSTKVSEETESQQQWDTSKGEQVSQNGLPTEQGSPRMAETVDTSEMVNGAAEQRTS
SKESSPIPSPTSDRKAKTSLPAQSAATLPARTQETPSAQMEGFLNRKHEWEAHNKKASSR
SWHNVYCVINNQEMGFYKDAKTAASGIPYHSEVPVSLKEAICEVALDYKKKKHVFKLRLN
DGNEYLFQAKDDEEMNTWIQAISSAISSDKHEVSASTQSTPASSRAQTLPTSAVTITSES
SPGKREKDKEKDKEKRFSLFGKKK
NT seq
7095 nt
NT seq
+upstream
nt +downstream
nt
atgacgaccacagtagccacagactacgacaacattgagatccagcagcagtacagcgat
gtcaacaaccgctgggacgtggacgactgggataatgagaacagctccgcgaggctcttt
gagcgatcgcgcatcaaggctctggcagatgagcgcgaagccgtgcaaaagaagaccttt
accaagtgggtcaactcccacctcgcccgagtgtcctgccggatcacagacctgtacacc
gaccttcgagatggacggatgctcatcaagctgctggaggtcctctctggagagagactg
cccaaacccaccaagggacgaatgcgcatccactgtctggagaatgtggacaaagccctt
cagttcctgaaggagcagagagtccatctggagaacatggggtcccatgacatcgtggat
gggaaccaccggctgaccctcggcctcatctggaccatcatcctgcggttccagatccag
gacatcagtgtggaaactgaagacaacaaagagaagaaatctgccaaggatgcattgctg
ttgtggtgccagatgaagacagctgggtaccccaacgtcaacattcacaatttcactacc
agctggagggacggcatggccttcaacgccctgatacacaagcacaggcctgacctgata
gattttgacaaactgaagaaatccaatgcacactacaatctgcagaatgcgtttaacttg
gcggagcagcaccttggcctcaccaaactgttggaccctgaagatatcagcgtggaccac
cccgatgagaagtccattatcacttacgtggtgacttattaccactacttctcaaagatg
aaggccttggctgttgaaggaaagcgaattggaaaggtgcttgacaatgctattgaaact
gaaaaaatgattgaaaagtatgaatcccttgcctctgatcttctggagtggattgaacaa
accatcattattttgaacaatcgcaaatttgccaactcgctggttggggtccaacaacag
cttcaggccttcaacacttaccgcactgtggagaaaccccccaaatttactgagaagggg
aacttggaagtcctgcttttcactattcagagcaagatgagggccaataaccagaaggtc
tacatgccccgggaggggaagctcatctctgatattaacaaggcctgggaacgactggaa
aaagcagagcacgagagagaactggccctgcggaacgagcttattcgacaggagaaactg
gaacagctcgcccgcagattcgaccgcaaggcagctatgagagagacctggctgagcgag
aaccagcgtctggtgtcccaggacaactttggatttgaccttcctgctgtcgaggccgcc
acgaaaaagcacgaggccattgagacggacattgccgcatacgaggagcgtgtgcaggct
gtggttgccgtggccagggagctggaagcggagaactaccatgacatcaagcgcatcacg
gcaaggaaggacaacgtcatccggctctgggaatacctgctggaactgctcagggcccgg
aggcagcgcctcgagatgaacctgggcctgcagaagatattccaggaaatgctgtacatt
atggactggatggatgagatgaaggtgctattactgtctcaggactatggcaaacacttg
ctgggcgtggaagacctgttgcagaagcatgccctggttgaagcggacattggcatccag
gcagagcgggtgagaggtgtcaatgcctctgcccagaagtttgcaacagacggggaaggt
tacaagccctgcgacccccaggtgatccgagaccgcgtggcccacatggagttctgttat
caagagctttgccagttggcagcagagcgccgggcccgcctggaagagtcccggcgcctc
tggaagttcttctgggagatggcggaggaggaaggctggatccgggagaaggagaagatc
ctgtcctctgacgactacggcaaggacctcaccagtgtcatgcgcctgctcagcaagcac
cgggcattcgaggacgagatgagcggccgcagcggtcacttcgagcaggccatcaaagag
ggcgaggacatgatcgctgaggagcactttgggtcggagaagatccgggagcggatcgcc
tacatccgcgagcagtgggcccacctggagcagctctcggccatccgcaagaagcgcctg
gaggaggcctcactgctgcaccagttccaggcggatgccgacgacatcgacgcctggatg
ctggacatcctcaagatcgtctccagcaacgacgtgggccacgatgagtactccacccag
tctctggtcaagaagcacaaggatgtggccgaggagatcgccaactaccggcccaccatc
gactcgctgcacgagcaggccggtgccctcccccaggagcacgccgagtcccccgatgta
cggggccggctcgcgggcatcgaggagcgctacaaggaggtggctgaactgacgcggctg
cggaagcaggcgctgcaggacaccctggccctgtacaagatgttcagcgaggctgatgcc
tgcgagctctggatcgatgagaaggagcagtggctcaacaacatgcagatcccagagaag
ctggaggacctggaggtcatccagcacagattcgagagcttagaaccagagatgaacaac
caagcttcccgagtggcggtggtgaatcagattgcacggcagctgatgcacagcggccac
ccaagcgagaaggagatcaaggcccagcaggacaagctcaacacgaggtggagtcagttc
agggagctggtggaccggaagaaggatgcactcctctccgccctgagcatccagaactac
cacctcgagtgcaatgaaaccaagtcctggatccgggaaaagaccaaggtcatcgaatcc
acccaggacctgggcaatgacctggctggcgtcatggccttgcagcgcaagctgaccggc
atggagcgggacctggtggccatcgaggcgaagctgagcgacctgcagaaggaggctgag
aagctggagtccgagcaccccgaccaggcccaggccatcctgtctcggctggccgagatc
agcgacgtgtgggaggagatgaaaaccacgctgaggaaccgcgaggcctccctgggagag
gccagcaagctgcagcagttcctgcgggacctggacgacttccagtcctggctctccagg
acccagacggccatcgcctcggaggacatgcccaacaccctgaccgaagccgagaagctc
ctcacacagcatgagaacatcaaaaacgagatcgacaactacgaggaggactaccagaag
atgagggacatgggtgagatggtcacgcagggccagaccgacgcccagtacatgtttctg
cggcagcggctgcaggccctggacaccgggtggaatgagctccacaagatgtgggagaac
agacagaacctcctttcccagtcccacgcccaccagcagttcctgcgggacaccaagcag
gctgaagcctttctcaacaaccaggagtatgtcttggcccatactgagatgcccaccacc
ttggaaggggctgaagcagctattaaaaaacaagaggacttcatgaccaccatggatgcc
aacgaggagaagatcaatgcagtcgtggagaccggccgcaggctggtgagcgatgggaac
atcaactcggatcgcatccaagagaaggtggactccatcgatgacagacataggaagaat
cgcgaagcagcaagtgagcttctgatgagactgaaggacaacagggatcttcagaaattc
ctgcaagattgtcaagagttgtctctctggatcaatgaaaagatgcttacagcccaggac
atgtcttatgatgaagccagaaatctgcacagtaaatggttaaaacatcaagcatttatg
gcagaactcgcatccaacaaagaatggcttgacaaaattgagaaggaaggaatgcagctc
atttcagaaaagccggagacggaagccgtggtaaaggagaaactcacaggtttgcataaa
atgtgggaagtccttgaatccaccacgcagaccaaggcccagcggctcttcgatgcaaac
aaggctgaactcttcacccagagctgtgcagacctggacaaatggctgcacggcctggag
agtcagattcaatctgatgattacggcaaagacctcaccagtgtcaacatcctgctgaaa
aagcaacagatgctggagaatcagatggaggtgcggaagaaggagattgaggagctccag
agccaggcacaggccctgagccaggaggggaagagcacagacgaggtggacagcaagcgg
ctcaccgtgcagaccaagttcatggagctgctggagcccctaaatgagaggaagcagaac
ctgctggcctccaaagagatccatcagtttaaccgggacgtggaggacgagatcttgtgg
gttggagagaggatgcctttggcaacttccacggatcatggccacaatctccagaccgtg
cagctgttaataaagaaaaatcagaccctccagaaggagatccaggggcaccagcctcgc
attgatgacattttcgagaggagccagaacatcgttgccgacagcagcagcctcagtgcc
gaggccatccggcagaggctggccgacctgaagcagctgtggggccagctcatcgaggag
acggagaagcggcaccggcggctggaggaggcacacagggcccagcagtactacttcgat
gctgccgaggccgaggcgtggatgagtgagcaggagctgtacatgatgtctgaggagaag
gccaaggatgagcagagtgcagtctctatgttgaagaagcaccagattctggaacaagca
gtggaggactacgcagagacggtacatcagctctctaagaccagccgggccctggtagcc
gacagccatcctgaaagcgagcgcatcagcatgcggcaatccaaggtggacaagctgtac
gcgggcctcaaggacctggccgaggagaggaggggcaagctggacgagaggcaccggctg
ttccagctcaaccgcgaggtggacgacctggagcagtggattgccgagagggaggtggtc
gcagggtctcacgagttggggcaggactacgagcatgtcacgatgctacaagaacggttc
cgggagtttgcccgagacacgggaaacatcgggcaggagcgcgtggacactgtcaatcac
atggcagatgagctcatcaactccggacattcagatgctgccaccattgccgagtggaag
gacgggctcaacgaagcctgggcagacctcctggagctcattgacacgagaacacagatc
cttgccgcctcctacgaactgcacaagttttaccacgatgccaaggagatctttggacgc
atccaggacaaacacaagaaactccccgaggagctcgggagagatcagaacacagtggag
accttacagagaatgcataccacatttgagcatgacatccaggctctgggcactcaggtg
aggcagctgcaggaggacgcagcccgcctccaggcagcctatgcaggtgacaaggctgac
gacatccagaagcgggagaacgaggtcctagaagcctggaaggccctgctggatgcctgt
gagggccgcagggtgcggctggtggacacgggggacaagttccgcttcttcagcatggtg
cgcgacctcatgctatggatggaggatgtcatccggcagatcgaagcccaggagaagcca
agggatgtatcatctgttgaactcttaatgaataatcatcaaggtatcaaagctgaaatc
gatgctcgaaatgacagtttcacaacctgcattgaacttgggaagtcgctgctggcgagg
aagcactacgcgtcagaggagatcaaggagaagttactgcagttgacggacaagagaaaa
gaaatgattgacaaatgggaagaccgatgggagtggttaagactgatcttggaggtccat
cagttctcaagggacgccagtgtggccgaggcctggctgcttggacaggagccgtaccta
tccagccgagaaataggccagagcgtggacgaggtggagaagctcatcaagcgccatgag
gcttttgaaaagtctgcagcgacctgggacgagaggttctccgccctggaacggttgacg
acgttggagctactggaagtgcgcagacagcaagaggaagaggagaggaagaggcggccg
ccttctcccgagcccagcacaaaggtttccgaggagaccgagtcccagcagcagtgggat
acttcaaaaggagagcaagtttcccagaatggtttgccgaccgagcagggatctccacgg
atggcagaaacggtggacacgagtgaaatggtcaacggcgccgcagaacagaggacaagc
tcgaaggagtccagccccatcccctccccaacctccgaccgcaaagccaagacctccctc
cctgcccagagtgccgccaccttgccggccagaacccaggagacgccctcggcccagatg
gaaggcttcctgaatcggaagcacgagtgggaggcccacaacaagaaagcctcaagcagg
tcctggcacaatgtttactgtgtcataaataaccaagaaatgggtttctacaaagacgca
aagacagctgcttccggaattccctaccacagcgaggtccctgtgagtttgaaagaagcc
atctgtgaagtggccctcgattacaaaaagaagaaacacgtgttcaagctaagactaaat
gatggcaacgagtacctcttccaagccaaagatgatgaggaaatgaacacgtggatccag
gccatctcctccgccatctcctctgataaacacgaggtgtccgccagcacccagagcacg
ccagcatccagccgggctcagaccttgcccaccagcgccgtgaccatcaccagcgagtcc
agtcccggcaaacgggagaaggacaaagagaaagacaaggaaaagaggttcagccttttt
ggcaagaagaagtga
DBGET
integrated database retrieval system
