Sus scrofa (pig): 100516529
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Entry
100516529 CDS
T01009
Symbol
GSPT2
Name
(RefSeq) eukaryotic peptide chain release factor GTP-binding subunit ERF3B isoform X1
KO
K03267
peptide chain release factor subunit 3
Organism
ssc
Sus scrofa (pig)
Pathway
ssc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100516529 (GSPT2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssc03019
]
100516529 (GSPT2)
03012 Translation factors [BR:
ssc03012
]
100516529 (GSPT2)
Messenger RNA biogenesis [BR:
ssc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
100516529 (GSPT2)
Translation factors [BR:
ssc03012
]
Eukaryotic type
Release factors
100516529 (GSPT2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
GTP_EFTU_D2
PAM2
MMR_HSR1
Motif
Other DBs
NCBI-GeneID:
100516529
NCBI-ProteinID:
XP_003135149
Ensembl:
ENSSSCG00000012317
Vega:
OTTSUSG00000004565
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All DBs
Position
X:complement(45193336..45195939)
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AA seq
684 aa
AA seq
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MQRWDPAASALLRFVTLPPEPSALAASPPAAPARSFWPVDPAPSPHPSGLRTMDLGSSSS
DSAPDCWDQVDMEAPGLAPSGDPGSPLAAAAAAAEAQREPLSSAFSRQLNVNAKPFVPNV
HAAEFVPSFLRGPGQPQTPPADATGIDETCPGAGDPQGKRLGRGAPVEHSKEEQLVLREG
SNAAVTMELSEPVVENGEVEMVLEESWEHNKEVSEAEPGGSSLGDSGPPEESGQEMMEKE
EIRKSKSLVVPSGAPKKEHVNVVFIGHVDAGKSTIGGQIMFLTGMVDKRTLEKYEREAKE
KNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEKKHFTILDAPGHKSFVPNMIGGASQ
ADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKYLIVLINKMDDPTVNWSSERYE
ECKEKLVPFLKKVGFSPKKDIHFMPCSGLTGANIKEQSDFCPWYTGLPFIPYLDNMPNFN
RSIDGPIRLPIVDKYKDMGTVVLGKLESGSIFKGQQLVMMPNKHNVEVLGILSDDAETDY
VAPGENLKIRLKGIEEEEILPGFILCDPNNLCHSGRTFDVQIVIIEHKSIICPGYNAVLH
IHTCIEEVEITALISLVDKKSGEKSKTRPRFVKQDQVCIARLRTAGTICLETFKDFPQMG
RFTLRDEGKTIAIGKVLKLVPEKD
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgttgggacccggctgcctccgcgctgctaaggttcgtgacgctcccccccgag
ccctccgctcttgctgcctcacccccagcggcacctgcccgctccttctggcccgttgat
cccgctccctctccgcacccatcagggctgaggaccatggatctgggcagcagcagcagc
gactcggctcccgactgctgggaccaggtggacatggaagcaccgggtttggccccgagc
ggggatccaggctccccgttggcggcggcggcggcggcggccgaggcccagcgtgagccc
ctcagctcggccttcagccgtcagctcaacgtcaacgccaaacccttcgtgcctaacgtc
cacgccgcggagttcgtgccgtcctttctgcgcggccccggccagccgcagacccccccg
gccgacgccaccggcatcgacgaaacctgccccggcgcgggcgaccctcaaggtaaaagg
ctgggacggggggcacctgtggaacattccaaagaggaacagttagtgttgcgtgaaggt
tccaatgcagccgttaccatggaactttcggaacctgttgtagaaaatggagaggtggag
atggtcttagaagagtcatgggagcacaataaagaagtaagtgaagctgagccggggggt
agttccttgggagattcggggcccccagaagaaagtggccaggaaatgatggagaaagag
gaaatcagaaaatctaaatcgctggtcgtaccctcaggtgctcctaaaaaagaacacgta
aatgtggtcttcattgggcatgtagatgccggaaagtcaaccattggaggccagataatg
tttttgacaggaatggttgacaaaaggacacttgagaaatatgaaagagaagctaaggaa
aaaaacagagaaacttggtatttgtcctgggccttagataccaatcaggaagaacgagac
aagggtaaaacagtagaagtgggtcgtgcctattttgaaaccgaaaagaaacatttcaca
attttagatgcccctggccacaagagttttgtcccaaatatgatcggtggtgcttctcaa
gctgatttggctgtactggtcatctctgccaggaaaggagagtttgaaaccggatttgaa
aaaggtggacagacgagagaacatgcaatgttggcaaaaacagcaggggtgaagtattta
atagtgcttattaataagatggatgatcccacagtaaattggagcagcgagagatatgaa
gaatgtaaagaaaagctagtgccctttttgaaaaaagtcggcttcagtcccaaaaaggac
attcactttatgccctgctcagggctgaccggggcaaatattaaagagcagtcagatttc
tgcccttggtacactggattgccattcattccttatttggataatatgccaaacttcaac
agatccattgatggaccaattagactgccaattgtggataagtacaaggatatgggcact
gtggtactgggaaagctggaatcaggatccatttttaaaggccagcagcttgtgatgatg
ccaaacaagcacaatgtggaagttcttggaatactctctgatgatgctgaaactgattat
gtagccccaggtgaaaatcttaaaatcagactgaagggaattgaagaagaagagattctt
ccaggattcatactctgtgatcctaataatctttgccattctgggcgcacattcgatgtt
cagatagtgattattgagcacaagtccatcatctgtccaggttataatgcggtgctgcac
attcatacttgtattgaggaagttgagataacagccttaatctccttggtagacaaaaaa
tcaggagaaaagagtaagacgcggccccgcttcgtgaaacaagatcaagtgtgcattgcc
cgtttaaggacagcaggaactatctgccttgagaccttcaaagattttcctcagatgggt
cgtttcactttaagagatgagggtaagaccattgcgattggaaaagttctgaaactggtc
ccagagaaggactaa
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