Sus scrofa (pig): 100516668
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Entry
100516668 CDS
T01009
Symbol
RABGEF1
Name
(RefSeq) rab5 GDP/GTP exchange factor isoform X2
KO
K20131
Rab5 GDP/GTP exchange factor
Organism
ssc
Sus scrofa (pig)
Pathway
ssc04137
Mitophagy - animal
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
100516668 (RABGEF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ssc04131
]
100516668 (RABGEF1)
Membrane trafficking [BR:
ssc04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
100516668 (RABGEF1)
Protein recycling
Other Rab GTPase associated proteins
100516668 (RABGEF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VPS9
DUF5601
zf-A20
SSTK-IP
Motif
Other DBs
NCBI-GeneID:
100516668
NCBI-ProteinID:
XP_003124486
Ensembl:
ENSSSCG00000007735
UniProt:
A0A4X1SXM4
F1RJI2
LinkDB
All DBs
Position
3:complement(16308112..16376604)
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AA seq
491 aa
AA seq
DB search
MSLKSERRGIHVDQSELLCKKGCGYYGNPAWQGFCSKCWREEYHKARQKQIQEDWELAER
LQREEEEAFASSQSSQGAQSLTFSKFEEKKTNEKTRKVTTVKKFFSASSRVGSKKEIQEA
KAPSPSINRQTSIETDRVSKEFIEFLKTFHKTGQEIYKQTKMFLESMHYKRDLSIEEQSE
CTQDFYQTVAERMQTRGKVPPERVEKIMDQIEKYIMTRLYKYVFCPETTDDEKKDLAIQK
RIRALHWVTPQMLCVPVNEEIPEVSDMVVKAITDIIEMDSKRVPRDKLACITKCSKHIFN
AIKVTKNEPASADDFLPTLIYIVLKGNPPRLQSNIQYITRFCNPSRLMTGEDGYYFTNLC
CAVAFIEKLDAQSLNLSQEDFDRYMSGQTSPRKQESENWSPDACLGVKQMYKNLDLLSQL
NERQERIMNEAKKLEKDLIDWTDGIAKEVQDIVEKYPLEIKPPNQSLAAIDSENVENDKL
PPPLQPQVYAG
NT seq
1476 nt
NT seq
+upstream
nt +downstream
nt
atgagccttaagtctgaacgccgaggaattcatgtggatcagtcagagctcctatgcaag
aaaggatgtggttactacggcaaccctgcttggcagggtttctgctccaagtgctggagg
gaggagtaccacaaagccaggcagaagcagattcaggaggattgggaactggcagagcga
ctacagcgggaggaggaagaggcctttgccagcagtcagagcagccaaggagcccagtcc
ctcacattttccaagtttgaggaaaagaagaccaatgagaagacccgcaaagttaccaca
gtgaagaaattcttcagcgcttcttccagggttggatcaaagaaggaaattcaggaagca
aaagctcccagtccttccataaaccggcaaaccagcattgaaacggacagagtgtctaaa
gaattcatagagtttctcaagaccttccacaagacaggccaagaaatctataagcagacc
aagatgtttttggaatcaatgcattacaaaagggatttaagcattgaggaacagtcagag
tgtactcaggatttttaccagactgtggctgagaggatgcagacccgtgggaaagtgcct
ccagaaagagttgagaagataatggaccagatcgaaaagtacatcatgactcggctttat
aaatatgtgttctgtccagaaactactgatgatgagaagaaagatctcgccattcagaag
aggatcagagccctgcactgggttacacctcagatgctttgtgtccctgttaatgaagaa
attccagaggtgtctgatatggtggtgaaagcaattacagacatcattgaaatggattca
aagcgtgtgccccgggataagctggcctgtatcaccaagtgcagcaagcacatcttcaat
gccatcaaggtcaccaagaacgagcccgcttcagccgacgacttcttgcccactctcatc
tacattgttttgaagggcaaccccccgcgccttcagtccaatatccagtatatcacccgc
ttctgcaacccaagccggttgatgactggagaggatggctactatttcaccaacctgtgc
tgtgctgtggctttcattgagaaattagatgctcagtctttgaatttaagtcaggaagat
ttcgatcgatacatgtctggccagacttctcccaggaagcaagaatcggagaactggtct
cctgatgcttgcttgggtgttaagcagatgtataagaatttggatctcctgtctcaattg
aatgaacggcaggaaaggattatgaacgaagccaagaagcttgagaaagacctaatagat
tggacagatggaatcgcaaaagaggttcaagacattgttgagaaatatccacttgaaatt
aagcccccaaatcagtcgttagcagctattgactctgaaaatgttgaaaatgataaactt
cctccaccgctgcaacctcaagtttatgcaggatga
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