Sus scrofa (pig): 100517049
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Entry
100517049 CDS
T01009
Symbol
VPS11
Name
(RefSeq) vacuolar protein sorting-associated protein 11 homolog isoform X1
KO
K20179
vacuolar protein sorting-associated protein 11
Organism
ssc
Sus scrofa (pig)
Pathway
ssc04140
Autophagy - animal
ssc04142
Lysosome biogenesis
ssc04148
Efferocytosis
ssc05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome biogenesis
100517049 (VPS11)
04140 Autophagy - animal
100517049 (VPS11)
04148 Efferocytosis
100517049 (VPS11)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
100517049 (VPS11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ssc04131
]
100517049 (VPS11)
Membrane trafficking [BR:
ssc04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
100517049 (VPS11)
Hops complex
100517049 (VPS11)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PEP5_VPS11_N
TPR_PEP5_VPS11
VPS11_N
VPS11_C
VPS18_solenoid_2nd
Clathrin
zf-C3HC4_2
zf-RING_2
TPR_Vps41
zf-C3HC4
zf-rbx1
TPR_GEMI5
Beta-prop_WDR3_1st
zf-C3H2C3
Beta-prop_IFT122_1st
zf-RING_UBOX
zf-RING_5
Beta-prop_WDR36-Utp21_1st
zf-RING_11
zf-HC5HC2H
zf-ANAPC11
zf-C3HC4_3
zf_RING_Vps8_fungal
DUF5847
Rv0250c
DUF1993
VPS18_solenoid_1st
zf-RING-like
TSGP1
DLP_helical
Motif
Other DBs
NCBI-GeneID:
100517049
NCBI-ProteinID:
XP_003129971
Ensembl:
ENSSSCG00000015107
UniProt:
F1SAH7
A0A4X1SIU4
LinkDB
All DBs
Position
9:46285718..46297465
Genome browser
AA seq
941 aa
AA seq
DB search
MAAYLQWRRFVFFDKELVKEPLGNDGAAPGPAPASAPAASKFLCLPPGITVCDSGRGSLV
FGDMEGQIWFLPRSLQLTGFQAYKLRVTHLYQLKQHNILASVGEDEEGINPLVKIWNLEK
RDGGNPLCTRIFPAIPGTEPTVVSCLTVHENLNFMAIGFTDGSVTLNKGDITRDRHSKTQ
ILHKGNYPVTGLAFRQAGKTTHLFVVTTENVQSYIVSGKDYPRVELDTHGCGLRCSALSD
PSQDMQFIVAGDECVYLYQPDERGPCFAFEGHKLIAHWFRGYLVIVSRDRKVSPKSEFTS
RDSQSSDKQILNIYDLCNKFIAYSAVFEDVVDVLAEWGSLYVLTRDGRVHALQEKDTQTK
LEMLFKKNLFEMAINLAKSQHLDSDGLAQIFMQYGDHLYSKGNHDGAVQQYIRTIGKLEP
SYVIRKFLDAQRIHNLTAYLQTLHRQSLANADHTTLLLNCYTKLKDSSKLEEFIKTKSES
EVHFDVETAIKVLRQAGYYSHALYLAENHAHHEWYLKIQLEDIKNYQEALRYIGKLPFEQ
AESNMKRYGKTLMHHIPEQTTQLLKGLCTNYQPSLEGRGDREAPGCRANSEEFIPIFANN
PRELKAFLEHMSEVQPDSPQGIYDTLLELRLQNWAHEEDPQVKEKLHAEAISLLKSGRFC
DVFDKALVLCQMHDFQDGVLYLYEQGKLFQQIMHYHMQHEQYRQVIAVCERHGEQEPSLW
EQALSYFARKEEDCKEYVAAVLKHIESKNLMPPLLVVQTLAHNSTATLSVIRDYLVQKLQ
KQSQQIAQDELRVRRYREETTRIRQEIQELKASPKIFQKTKCSICNSALELPSVHFLCGH
SFHQHCFESYSESDADCPTCLPENRKVMDMIRAQEQKRDLHDQFQHQLKCSNDSFSVIAD
YFGRGVFNKLTLLTDPPPARLTSSLEAGLQRDLLMHSRRGT
NT seq
2826 nt
NT seq
+upstream
nt +downstream
nt
atggcggcctacctgcagtggcggcgcttcgttttcttcgacaaggagctggtgaaagag
ccgctgggcaatgatggagctgctcccgggcccgcacctgcctctgcacctgctgcttcc
aagttcctttgcctccctcctggcatcactgtctgcgactcaggccgagggagcctagtc
tttggagatatggaaggccagatctggttcttgccccgctccttacagcttacgggtttc
caggcctacaaattacgggtgacacacctgtaccaactgaaacagcacaatattttggca
tctgttggtgaggatgaagagggcatcaaccccttggtaaagatctggaacctggagaag
agagatggtggcaatccactctgcactcggatcttccctgccattccagggacagagcca
actgtcgtgtcttgtttgactgtccatgaaaatctcaactttatggccattggttttaca
gatggcagtgttacattgaacaaaggggacatcacccgggaccggcatagcaagacccag
attttgcacaagggcaactatcctgttacgggactggcctttcgccaagcaggaaagacc
actcacttgtttgttgtgacaaccgagaatgttcagtcctacatagtttctggaaaggac
taccctcgtgtggagttggacacccatggttgtggcctgcgctgctcagctctaagcgac
ccttctcaggacatgcagttcatagtggcgggggatgagtgtgtctacttgtaccagccg
gatgaacgtgggccctgcttcgcctttgagggccataaactcattgctcactggtttaga
ggctaccttgtcattgtctcccgtgatcggaaagtttctcccaagtcggagtttaccagc
agggattcccagagctccgacaagcagattctcaacatctatgacctgtgcaacaagttc
atagcctacagcgccgtctttgaggatgtagtggatgtgcttgccgagtggggctccctg
tacgtgctgacgcgggatgggcgggtccacgcactgcaggagaaggacacacagaccaaa
ctggagatgctgtttaagaagaatctgtttgagatggcgatcaacctggccaagagccag
catctggacagtgatgggttggcccagatcttcatgcagtatggggaccacctctacagc
aagggcaaccatgatggggctgtccagcagtatatccgaaccattggaaagttggagcca
tcctatgtgatccgcaagtttctggatgcccagcgcatccacaacctgacagcctacctg
cagaccctgcaccggcagtccctggccaatgccgaccacaccacccttctgctcaactgc
tacaccaagctcaaggacagctcgaagctggaggagttcatcaagacaaagagtgagagc
gaggtccactttgatgtggagacagccatcaaggttctccggcaggccggctactactcc
cacgccctctacttggctgagaaccacgcacatcacgagtggtacttgaagatccagcta
gaggacatcaagaattatcaggaagcccttcggtacatcggaaagctgccttttgagcag
gcagagagcaacatgaaacgctatggcaagaccctcatgcaccatataccagagcagacc
acccagttgctgaaaggactctgcaccaactatcagcccagccttgaaggccgaggcgat
agggaggctcccggctgcagggccaactcagaggagttcatccccatctttgccaacaac
cctcgggagttgaaagctttcctagagcacatgagtgaggtacagcctgactccccacag
ggcatctacgacacactccttgaactgcgactccagaactgggcccacgaggaagatccg
caggtcaaagagaagcttcacgcggaggccatctctctcctgaagagtggtcgcttctgt
gacgtctttgacaaagccctggtcctctgccagatgcacgacttccaggatggggtcctt
tacctctatgagcaggggaaactgttccagcagatcatgcactaccacatgcagcacgag
cagtaccggcaggtgatcgccgtgtgcgagcgccacggggagcaggagccctccctgtgg
gagcaggcgctcagctacttcgcccgcaaggaggaggactgcaaggagtatgtggcggcc
gtgctcaagcacatcgagagcaagaatctcatgccaccccttctagtggtgcagaccttg
gcccacaattccacagccaccctgtctgtcattcgggactacctggtccaaaagctgcag
aaacagagccagcaaatcgcccaggatgagctccgggtgcggcgctaccgagaggagacc
acccgcatccgccaggagatccaggagctgaaggcaagtccaaagattttccagaagacc
aagtgcagcatctgtaacagtgccttggagttgccctctgtccactttctctgcggccac
tccttccaccagcactgctttgagagttactcggaaagtgatgccgactgccccacctgc
ctccctgaaaaccgcaaggtcatggatatgatccgggctcaggaacagaagcgagatctc
cacgatcaattccagcaccagctcaagtgctccaatgacagcttctctgtgattgccgat
tactttggcagaggtgttttcaacaaattgactctgctgaccgacccacccccagcccgg
ctgacttcgagcctggaggccggactgcagcgggacttgctcatgcactccagaaggggc
acctag
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