Sus scrofa (pig): 100517192
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Entry
100517192 CDS
T01009
Symbol
DSCAM
Name
(RefSeq) LOW QUALITY PROTEIN: Down syndrome cell adhesion molecule
KO
K06767
Down syndrome cell adhesion molecule
Organism
ssc
Sus scrofa (pig)
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ssc04515
]
100517192 (DSCAM)
Cell adhesion molecules [BR:
ssc04515
]
Immunoglobulin superfamily
Other
100517192 (DSCAM)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
I-set
Ig_3
fn3
Ig_2
ig
FN3_DSCAM-DSCAML_C
V-set
Ig_5
C2-set_2
Pur_ac_phosph_N
Sp38
C1-set
Interfer-bind
V-set_CD47
fn3_2
ChitinaseA_N
Fn3_Dep-1_3rd
ARM_TT21_4th
DUF6377
Motif
Other DBs
NCBI-GeneID:
100517192
NCBI-ProteinID:
XP_020927156
Ensembl:
ENSSSCG00000022949
LinkDB
All DBs
Position
13:complement(203566765..204292079)
Genome browser
AA seq
2046 aa
AA seq
DB search
MDPLRSLLVFLKEKQCVAWGRICLHARHRTGTVCCFLARRAWELSSPGVFGEDLHSSLYF
VNASLQEVVFASTTGTLVPCPAAGIPPVSLRWYLATGEEIYDVPGIRHVHPNGTLQIFPF
PPSSFSTLIHDNTYYCTAENPSGKIRSQDVHIKAVLREPYTVRVEDQKTMRGNVAVFKCI
IPSSVEAYVSVVSWEKDTVSLISGSRFLITSTGALYIKDVQNEDGLYNYRCITRHRYTGE
TRQSNSARLFVSDPANSAPSILDGFDHRKAMAGQRVELPCKALGHPEPDYRWLKDNMPLE
LSGRFQKTVTGLLIENTRPSDSGSYVCEVSNRYGTAKVIGRLYVKQPLKATISPRKVKSS
VGSQVSLSCSVTGSEDQELSWYRNGEILNPGKNVRITGLNREKLIMDHMVRSDGGAYQCF
VRKDKLSAQDYVQVVLEDGTPKIISAFSEKVVSPAEPVSLMCNVKGTPLPTITWTLDDDP
ILKGGSHRISQMITSEGNVVSYLNISSSQVRDGGVYRCTANNSAGVVLYQARINVRGPAS
IRPMKNITAIAGRDTYIHCRVIGYPYYSIKWYKNSNLLPFNHRQVAFENNGTLKLSDVQK
EVDEGEYTCNVLVQPQLSTSQSVHVTVKVPPFIQPFEFPRFSIGQRVFIPCVVVSGDLPI
TITWQKDGRPIPASLGVTIDNIDFTSSLRISNLSLMHNGNYTCIARNEAAAVEHQSQLIV
RVPPKFVVQPRDQDGIYGKAVILNCSAEGYPVPTIVWKFSKGAGVPQFQPIXLNGRIQVL
SNGSLLIKHVVEEDSGYYLCKVSNDVGADVSKSMYLTVKIPAMITSYPNTTLATQGQKKE
MSCTAHGEKPIIVRWEKEDRIINPEMARYLVSTKEVGEEVISTLQILPTVREDSGFFSCH
AINSYGEDRGIIQLTVQEPPDPPEIEIKDVKARTITLRWTMGFDGNSPITGYDIECKNKS
DSWDSAQRTKDVSPQLNSATIIDIHPSSTYSIRMYAKNRIGKSEPSNELSITADEAAPDG
PPQEVHLEPVSSQSIRVTWKAPKKHLQNGIIRGYQIGYREYSTGGNFQFNIISIDTTGDS
EIYTLDNLNKFTQYGLVVQACNRAGTGPSSQEIITTTLEDVPSSPPENVQAIATSPESIS
ISWSTLSKEALNGILQGFRVIYWANLMDGELGEIKNVTTTQPSLELDGLEKYTNYSIQVL
AFTRAGDGVRSEQIFTRTKEDVPGPPAGVKAAAASASMVFVSWLPPLKLNGIIRKYTVFC
SHPYPTVISEFEASPDSFSYRIPNLSRNRQYSVWVVAVTSAGRGNSSEIITVEPLAKAPA
RILTFSGTVTTPWMKDIALPCKAVGDPSPAVKWMKDSNGTPSLVMIDGRRSILSNGSFVI
RTVKAEDSGYYSCIANNNWGSDEIILNLQVQVPPDQPRLTVSKTTSSSITLSWLPGDNGG
SSIRGYILQYSEDNSEQWGSFPISPSERSYRLENLKCGTWYKFTLTAQNGVGPGRISEII
EAKTLGKEPQFSKEQELFASINTTRVRLNLVGWNDGGCPITSFTLEYRPFGTTVWTTAQR
TSLSKSYILYDLQEATWYELQMRVCNSAGCAEKQANFATLNYDGSTIPPLIKSVVQSDEG
LTTNEGLKMLVTISCILVGVLLLFVLLLVVRRRRREQRLKRLRDAKSLAEMLMSKNTRTS
DTLSKQQQTLRMHIDIPRAQLLIEERDTMETIDDRSTVLLTDADFGEAAKQKSLTVTHTV
HYQSVSQATGPLVDVSDARPGTNPTTRRNAKAGPAARNRYASQWTLNRPHPTVSTHTLTT
DWRLPTPRAAGSMDKESDSYSVSPSQDTDRARSSMVSTESASSTYEELARAYEHAKMEEQ
LRHAKFTITECFISDTSSEQLTAGTNEYTDSLTSSTPSESGICRFTASPPKPQDGGRVMN
MAVPXAHRPGDLIHLPPYLRMDFLLNRSGPATSRDLSLGQACLEPQKSRTRKRPTVLEPI
PMEAASSTSSTREGQQWQQGAVATLPQREGAELGQAAKMSSSQESLLDSRGHLKGNNPYA
KSYTLV
NT seq
6141 nt
NT seq
+upstream
nt +downstream
nt
atggacccgttacgtagccttcttgtgtttttaaaggagaagcagtgtgtggcatgggga
aggatctgtctgcacgcacggcatcgcacagggacagtctgctgctttcttgcaaggcga
gcctgggagctttcgtcaccaggagttttcggtgaggaccttcactccagcctctacttt
gtcaatgcatctctgcaagaggtagtgtttgcgagcaccacggggaccctggtgccctgc
ccggctgcaggcatccctcctgtgtctctcagatggtacctggcgacgggcgaggagatc
tacgatgtccccgggatccgccacgtccaccccaacggcactctccagattttccccttc
cctccttcgagctttagtaccttaatccatgacaatacttactattgcacagctgaaaat
ccttcagggaaaattagaagtcaggatgtccacatcaaggctgttttacgggagccctat
acagtccgtgtggaggaccagaaaaccatgagaggcaatgtcgcggtcttcaagtgcatt
atcccctcgtcggtggaggcgtacgtcagcgtcgtctcgtgggagaaagacaccgtctca
ctcatctcaggatctagatttctcatcacatccacgggagccttgtatattaaagatgta
cagaatgaagatggattgtataactaccgctgcatcacgcggcacagatacaccggggag
acaaggcagagcaacagcgcgagactttttgtatcagacccagcgaactcagccccatcc
atactggatgggttcgatcatcgcaaagccatggcagggcagcgtgtggagctgccttgc
aaagcgcttgggcaccctgagcccgattaccgctggctgaaggacaacatgcccctggaa
ctttctggaaggttccagaaaaccgtgacggggctgcttattgagaacactcgtccatcg
gactcaggcagctacgtgtgtgaagtgtccaacagatacggaaccgctaaggtgataggc
cgcctgtacgtgaaacagccgctgaaagctaccatcagccccaggaaggttaaaagcagt
gtgggcagccaagtctccttgtcctgcagcgtgacaggaagtgaggaccaggagctctcc
tggtaccgaaacggtgaaatcctcaaccctgggaagaacgtgaggatcacggggctcaac
cgtgagaagcttataatggatcacatggtcagaagcgacgggggcgcgtaccagtgcttc
gtgcgcaaggacaagctctccgctcaagactacgtgcaggtggtccttgaagatggaact
cccaaaattatttctgcctttagtgaaaaagtggtgagtccagctgagccggtttccctc
atgtgcaacgtgaaggggacgccactgcccaccatcacctggaccctggacgacgacccc
atcctcaagggcggcagccaccgcatcagccagatgatcacgtccgagggcaacgtggtc
agctacctgaacatctccagctctcaggtccgggacgggggcgtctaccgctgcactgcc
aacaactcggcgggagtcgtcctgtaccaggctcgaataaacgtaagagggcctgcaagc
attcgaccaatgaaaaatatcacagcaatagcagggcgggacacgtacatccactgtcgt
gtgattggctacccgtattactccatcaaatggtacaagaactctaacctgcttcctttc
aaccaccgccaagtggctttcgagaacaatggaaccctgaagctctcggatgtgcagaag
gaggttgatgagggggagtacacgtgcaacgtgctggttcaaccccagctctccaccagc
cagagtgtccacgtgacagtcaaagtcccaccttttatccaaccctttgagtttccgaga
ttctccatcggacagcgggtcttcatcccgtgtgttgtggtctcaggggacttgcccatc
accatcacctggcagaaggacggccggccgatccccgcgagcctcggggtgaccatcgac
aacatcgacttcacgagctccctaaggatttccaacctctccctgatgcacaacgggaat
tacacctgcatagcccggaatgaggccgcagcggtggagcaccagagccagctaatcgtg
agagttcctcccaagtttgtggttcagccacgggaccaggatgggatttacggcaaggct
gtcatcctcaattgctcagccgagggttatcctgtacctaccatcgtgtggaaattctcc
aaaggtgctggggttccccagttccaacccattngcctgaatggccgaattcaggtcctc
agcaacgggtctctgttgatcaagcacgtggtggaagaagacagcggctactacctgtgc
aaggtcagcaacgatgtgggcgcggacgtcagcaagtccatgtacctcacggtgaaaatt
cctgcgatgatcacgtcctatccgaacaccaccctggccactcagggtcagaagaaggaa
atgagctgcacggcccacggcgagaagcccatcatcgtccgctgggagaaggaagaccgc
atcattaaccccgagatggcccgttacctcgtgtccaccaaggaggtgggagaggaggtg
atctctacgctgcagattttgccaacggtaagagaagattctggcttcttctcctgtcac
gctatcaattcttacggggaggaccgtggaataattcagctcacggtgcaagagccccca
gaccctcccgagattgagatcaaagacgtgaaagcccgcaccatcacgctgcgctggacc
atgggttttgacgggaatagccccatcaccggctacgatattgaatgcaaaaataaatca
gactcctgggattctgctcagagaaccaaagatgtttcccctcagctgaactcggccacc
atcattgatatccacccttcctccacctacagcatccgcatgtacgccaagaaccggatt
ggcaagagcgagcccagcaacgagctgtccatcaccgcggacgaggcagctcccgatggc
ccaccgcaggaagtccacctggagcccgtatcatctcagagcatcagggtcacctggaag
gctcccaagaagcacctgcaaaacgggattatccgcggctaccaaataggctaccgggag
tacagcaccgggggcaacttccagttcaacatcatcagcatcgacaccacgggcgacagc
gagatctacaccctggacaacctgaacaagttcacccagtacggcctggtggtgcaggcc
tgcaaccgcgccgggacgggaccttcttctcaggaaatcatcaccaccaccctcgaggac
gtgcccagttcccctcccgaaaatgtccaagccatagcaacgtcaccagaaagcatctca
atatcctggtccaccctttccaaggaagccttgaatggaattctccaggggttcagagtc
atttactgggccaacctcatggacggagagctgggcgagatcaaaaacgtcaccaccacg
cagccctccctggagctggacgggctggagaagtacaccaactacagcatccaggtgctg
gcctttacccgggctggagacggcgtgcgaagcgagcagatcttcacccggaccaaagag
gatgttccaggtcctccggccggagtcaaggcggccgcggcctcagcctccatggtcttc
gtgtcctggctgccgcccctcaagctcaacggcatcatccggaagtacactgtcttctgc
tcccacccctaccccacagtgatcagcgagtttgaagcctctcctgactcattttcctac
agaattcccaacctgagtcggaatcgtcagtacagcgtctgggtggtggccgtgacatcg
gctgggagaggcaacagcagtgaaatcatcacggtggaaccgttagccaaagctcctgca
cgaatcctgaccttcagtggcacagtgaccactccctggatgaaagacatcgccttgcct
tgcaaagccgtcggggacccttctcctgcggtaaaatggatgaaagacagtaacgggacc
cccagcctcgtgatgattgacgggcggaggagcatcctcagcaacggcagcttcgtcatc
cgcacggtgaaggcggaggactccggctactacagctgcatcgccaacaacaactggggg
tcggacgagatcatcttaaatttgcaagtacaagttccgccagatcagcctcggcttaca
gtttccaagaccacttcctcttccatcaccctctcctggctccctggtgacaacggaggc
agttccatcagaggctacatcttgcagtactccgaggataacagtgagcagtgggggagt
ttccccatcagcccaagcgagcgctcttaccgccttgaaaacctgaaatgtggtacctgg
tacaagttcactctgactgcacagaacggcgtggggcccgggcgcataagtgaaatcata
gaggcgaaaaccttaggaaaagagccccagttctccaaagagcaggagctcttcgccagc
atcaacaccacgcgcgtgcggctcaacctcgtcggctggaacgacggcggctgccccatc
acctccttcacgctggagtacaggcccttcgggaccacggtctggaccacggcccagcgg
acctccctctccaagtcctacatcctgtacgacctgcaggaggccacgtggtacgagctg
cagatgagggtgtgcaacagcgccggctgcgccgagaagcaggccaacttcgccacgctc
aactacgacggcagtacaatccccccactcattaagtcagttgtccaaagcgatgagggg
ctgaccaccaacgagggccttaagatgctggtgaccatctcctgtatcctggtgggcgtc
ctgctgctgttcgtgctgctgctggtggtccggaggaggaggagggagcagaggctgaag
aggctcagagatgcaaagagtttagctgaaatgctcatgagtaagaatacccggacttcg
gataccttgagcaagcaacagcagactctgagaatgcacatcgacatacccagagctcag
cttttgattgaagagagagacacaatggagaccattgacgatcgctccacggtgctgttg
acggatgcggacttcggagaagcagcgaaacaaaagtccctgacggtgacgcacacggtc
cattaccaatcagtgtcgcaggccactgggcccttggtggatgtttcggacgcccgacca
ggaacaaatcccaccaccaggaggaacgccaaggccgggcccgcggcgagaaaccggtac
gccagccaatggacgctcaacagaccccaccccaccgtgtcaactcacaccctcaccacg
gactggaggctgcccacgccccgggccgcggggtcgatggacaaagagagcgacagttac
agcgtcagcccctcacaagacacagatcgagcgcgaagcagcatggtgtccacagaaagt
gcctcctccacgtacgaagaactggccagggcctacgagcacgccaagatggaggagcag
ctgagacacgccaagttcaccatcaccgagtgcttcatatccgacacatcctccgaacag
ttgacggcagggactaacgagtacacagacagcctgacctccagcaccccttccgagtcg
gggatctgcaggttcaccgcgtctccccccaaacctcaggatggaggccgagtgatgaac
atggcagtgccanaggcacatcggccaggcgacctcatacacttgcctccataccttcga
atggacttcttgttaaaccgaagcggtccagccaccagcagggacctgagtttagggcag
gcgtgcttggagcctcagaaaagtcggacccggaaacgccccacggtcctcgagcccatc
cccatggaggccgcctcctccacgtcctccacgagggagggacagcagtggcagcagggg
gccgtggccacattacctcagcgagaaggggcggagctgggccaggcggccaaaatgagc
agctcccaggaatccctgctggactctcggggccatttgaaaggcaacaatccctacgca
aaatcctacaccctggtataa
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integrated database retrieval system
