Sus scrofa (pig): 100517201
Help
Entry
100517201 CDS
T01009
Symbol
XRN2
Name
(RefSeq) LOW QUALITY PROTEIN: 5'-3' exoribonuclease 2
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
ssc
Sus scrofa (pig)
Pathway
ssc03008
Ribosome biogenesis in eukaryotes
ssc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
100517201 (XRN2)
09123 Folding, sorting and degradation
03018 RNA degradation
100517201 (XRN2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ssc03021
]
100517201 (XRN2)
03019 Messenger RNA biogenesis [BR:
ssc03019
]
100517201 (XRN2)
03009 Ribosome biogenesis [BR:
ssc03009
]
100517201 (XRN2)
03016 Transfer RNA biogenesis [BR:
ssc03016
]
100517201 (XRN2)
Transcription machinery [BR:
ssc03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
100517201 (XRN2)
Messenger RNA biogenesis [BR:
ssc03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
100517201 (XRN2)
Ribosome biogenesis [BR:
ssc03009
]
Eukaryotic type
Pre-60S particles
RNases
100517201 (XRN2)
Transfer RNA biogenesis [BR:
ssc03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
100517201 (XRN2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
Motif
Other DBs
NCBI-GeneID:
100517201
NCBI-ProteinID:
XP_005672806
Ensembl:
ENSSSCG00000007109
UniProt:
A0A4X1V3A4
LinkDB
All DBs
Position
17:29107641..29193500
Genome browser
AA seq
950 aa
AA seq
DB search
MGVPAFFRWLSRKYPSIIVNCVEEKPKECNGVKIPVDASKPNPNDVEFDNLYLDMNGIIH
PCTHPEDKPAPKNEDEMMVAIFEYIDRLFNIVRPRRLLYMAIDGVAPRAKMNQQRSRRFR
ASKEGMEAAVEKQRVREEILAKGGFLPPEEIKERFDSNCITPGTEFMDNLAKCLRYYIAD
RLNNDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIMLG
LATHEPNFTIIREEFKPNKPKPCGLCNQFGHEVKDCEGLPREKKGKHDELADSLPSAEGE
FIFLRLSVLREYLERELTMASLPFTFDVERSIDDWVFMCFFVGNDFLPHLPSLEIREGAI
DRLVNIYKNVVHKTGGYLTESGYVNLQRVQMIMLAVGEVEDSIFKKRKDDEDSFRRRQKE
KRKRMKRDQPSFSPGGILTPHALGSRNSPGSQVASNPRQAAYEMRMQNNSSPSVSPNTSF
ISDGSPSPRGGIKRKAEDSDSEPEPEDNVRLWEAGWKQRYYKNKFDVDAADEKFRRKVVQ
SYVEGXCWVLRYYYQGCASWKWYYPFHYAPFASDFEGIADMPSDFEKGTKPFKPLEQLMG
VFPAASGNFLPPSWRKLMSDPDSSIIDFYPEDFAIDLNGKKYAWQGVALLPFVDERRLRA
ALEEVYPDLTPEETRRNSLGGDVLFVGKHHPLHDFVLELYKTGSTESVDVPPELCHGIQG
KFSLDEEAILPDQVVCSPVPMLRDLTQNGTISINFKDPQFAEDYVFKAVMLPGARKPAPV
LKPGDWEKSSNGRQWKPQLGFNRDRRPVHLDPSAFRTLGHVMPRGSGPGVYGNAAPPPAT
YQGNLYRPLLRGQTQIPKLMSNMRPQDSWRGPPPLFQQQRFDRGVGAEPLLPWNRMLQTQ
NAAFQPNQYQMLAGPGGYPPRRDDRGGRQGYPREGRKYPLPPPSGRYSWN
NT seq
2853 nt
NT seq
+upstream
nt +downstream
nt
atgggagtcccggctttctttcgctggctcagccgcaagtacccgtccatcattgtcaat
tgcgtggaagagaagccaaaagaatgcaatggcgtaaagattcctgtcgatgccagtaag
cctaatccaaatgatgtggagtttgataatctgtatttggacatgaatggaatcatccat
ccctgtactcaccctgaagacaaaccagcgcccaaaaacgaggatgaaatgatggttgca
atttttgaatacattgaccgacttttcaatattgtgagaccaagacgacttctctacatg
gcaatagatggagtggcgccgcgcgctaaaatgaaccagcagcgttcaaggaggttcaga
gcatccaaagaaggaatggaagcagcagtagagaagcagcgagtcagggaagaaatactg
gcaaaaggtggcttccttcctccagaagaaataaaagagagatttgacagcaactgtatt
acaccaggaactgagttcatggacaatcttgctaaatgccttcgctattacatagctgat
cgtttaaataatgaccccgggtggaaaaatctgacagttattttgtctgatgctagtgct
cctggtgaaggggaacataaaatcatggattacattagaagacagagagcccagcctaac
catgacccaaacactcatcattgcttgtgtggagcagatgctgatctcattatgctcggc
cttgctacacacgaacccaactttaccattatcagagaagaattcaaaccaaacaaaccc
aaaccctgtggtctttgtaatcaatttggacatgaggtcaaggactgtgaaggtttgcca
agagaaaagaagggaaagcacgacgagctggcagacagccttcccagtgcagagggagag
ttcatcttcctacgtctcagtgtccttcgtgagtatttggaaagagagctcaccatggcc
agcctgccattcacgtttgatgtggagaggagcattgacgactgggtcttcatgtgcttc
tttgtgggaaatgacttccttcctcacctgccatccttagagattagggaaggtgcaatt
gaccgtttggttaacatatacaaaaatgtggtacacaaaactgggggttaccttacagaa
agtggttatgtcaatctgcagagagtacagatgatcatgttagcagttggtgaagttgag
gatagcatttttaaaaagagaaaggatgatgaggacagttttagaagacgacagaaagaa
aaaagaaagagaatgaagagagatcaaccgtctttctctcctggtggaatattaactcct
cacgccctgggctcaagaaattcaccaggatctcaagtagccagtaatccgagacaagca
gcctatgaaatgaggatgcagaataactctagtccttcagtatctcctaatacgagtttc
atttctgatggctccccgtctccaagaggaggaattaagcgaaaagcagaagacagtgac
agtgaacctgagccagaggataatgtcaggttatgggaagctggttggaaacaacgctac
tacaagaacaaatttgatgttgacgcagctgatgagaaattccgtcgtaaagttgtgcag
tcttatgttgaaggcntctgctgggttcttcgatattattaccagggctgtgcgtcctgg
aagtggtattatccattccattatgcaccgttcgcttcagacttcgaaggtattgcagat
atgccctctgatttcgagaagggtacaaaaccgtttaaaccactggaacaacttatggga
gtttttccagctgcaagtggtaactttctacctccatcatggcggaagctcatgagtgat
cctgattctagtataattgacttctacccagaagattttgctattgatttgaatgggaag
aagtatgcatggcaaggtgtggctttgctgcccttcgtggatgagcgaagactgcgagct
gccctggaagaggtgtacccggacctcactcctgaagagaccagaagaaacagtcttgga
ggagatgttttatttgtggggaaacatcacccactgcatgacttcgtattagagctgtac
aagacaggctccacagagtcagtggacgtaccacctgaactatgtcacgggattcaagga
aagttttctttggatgaagaagccattcttcctgatcaagtagtatgttcgcctgttccc
atgttaagagatctgacacagaacgggacaatcagtattaattttaaagacccacagttt
gctgaagattacgttttcaaagctgtaatgcttccaggagcaagaaaacctgcaccagtg
ctgaaacctggcgactgggagaaatccagcaatgggaggcagtggaagccccagctcggc
ttcaaccgggaccggcggcccgtccacctggatccttcagcctttaggactttgggccat
gttatgccgagaggctcaggacctggcgtttacggtaatgctgcaccaccacctgcgact
taccagggaaacttgtacaggcccctgctgagaggacaaacccagattccaaagcttatg
tcaaatatgaggcctcaggattcctggcgaggtcctcctccccttttccagcagcagaga
ttcgacaggggtgttggggctgaacctctgctgccatggaaccggatgcttcaaacccag
aacgcagccttccagccaaaccagtaccagatgctggcagggccaggcgggtacccaccc
agacgcgacgaccgtggagggagacagggatatcccagagaaggaaggaaataccctttg
ccaccaccctcaggaagatacagttggaattag
DBGET
integrated database retrieval system
