Sus scrofa (pig): 100517221
Help
Entry
100517221 CDS
T01009
Symbol
NPAS1
Name
(RefSeq) neuronal PAS domain-containing protein 1 isoform X1
KO
K09098
neuronal PAS domain-containing protein 1/3
Organism
ssc
Sus scrofa (pig)
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ssc03000
]
100517221 (NPAS1)
Transcription factors [BR:
ssc03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
100517221 (NPAS1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAS_3
bHLH_HIF1A
PAS_11
PAS
HLH
PAS_4
bHLH_NPAS4
Motif
Other DBs
NCBI-GeneID:
100517221
NCBI-ProteinID:
XP_020950282
Ensembl:
ENSSSCG00000003108
UniProt:
A0A480PXC0
LinkDB
All DBs
Position
6:52857739..52874741
Genome browser
AA seq
592 aa
AA seq
DB search
MAAPYPSSGGGGEVRCGGGRGGSVPWDFLPGLVVKAPPGPCLQAQRKEKSRNAARSRRGK
ENLEFFELAKLLPLPGAISSQLDKASIVRLSVTYLRLRRFAALGAPPWGLRTAGPPASLG
RRGPVALVSEIFEQHLGGHILQSLDGFVFALNQEGKFLYISETVSIYLGLSQVELTGSSV
FDYIHPGDHSEVLEQLGLRAPTSGPPTPPSVPSSSSSSSSSSSFADTPEIEASPTEMSPS
SRVQERSFFIRMKSTLTKRGLHVKASGYKVIHVTGRLRARALGLVALGHTLPPAPLAELP
LHGHMIVFRLSLGLTILACESRVSDHMDLGPSELVGRSCYQFVHGQDATRIRQSHLDLLD
KGQVMTGYYRWLQRAGGFVWLQSVATVAVSGKSPGERHVLWVSYVLSQAEAGETPLDAFQ
LPASLACEDASSPEPEPTEPEPPVEGKQAAPREEEEAPQPRGKAIKMEPSPQEPEDREDS
GDEEPSGHLAPPRPEFTSVIRAGALKQDLVGPWSLTPPGDPPPSLLHTGFLPPVMRGLCA
PGTIRYGPAELGLVYPHLQRLGPGPALPEAFYPALGLPYPGPLGTRVQRKGD
NT seq
1779 nt
NT seq
+upstream
nt +downstream
nt
atggcggccccctaccccagcagtggtggcggaggcgaagtcaggtgcgggggaggtcgc
ggcggcagcgtcccgtgggactttctgccggggctcgtggtcaaggcccctcccggaccc
tgcctgcaggcgcagcgcaaggagaagtcccggaacgcagcgcgctcgcggcgcggaaag
gagaacctggagttcttcgagctggccaagctgctcccgctgcccggagcgatctccagc
cagctggacaaggcgtccatcgtgcgcctcagcgtcacctacctccgcctgcgccgcttc
gctgcgctcggggcgccgccctgggggctgcggaccgcggggccgccggccagcctcggc
cgcaggggccccgtggcgctggtctctgagatcttcgagcagcacctgggaggacacatc
ctgcagtccctggatggcttcgtgtttgccttgaaccaggaagggaagttcctctacatc
tcagagacggtctccatttatctgggtctctcacaggtggagctgacgggcagcagcgtc
ttcgactacatccatcccggggaccactctgaggtgctggagcaactggggctgcgggcg
ccgacctccgggccccccaccccaccctccgtcccctcatcttcctcctcctcctcatcg
tcctcctcgtttgcggatacccctgagattgaggccagccccacggagatgtccccctcc
tcccgggtgcaggagcgctctttcttcatccgcatgaaatccactctcaccaagaggggg
ctgcacgtcaaagcctcggggtacaaggtcatccacgtgacgggccgccttcgggcccgc
gccctgggtctcgtggccctgggtcacacgttgcccccggcccccctggctgagctgccg
ctacacggacacatgatcgtcttccgactcagcctgggtctcaccatccttgcttgtgag
agcagagtcagcgaccacatggacctggggccctcggagctagtgggccgcagctgctac
cagtttgtccacggacaggatgcgaccaggatccgccaaagccacctggacctgctggac
aaggggcaggtgatgaccggttactaccgttggctgcagcgcgctgggggcttcgtgtgg
ctgcagtctgtggccactgtggccgtgagtgggaagagccctggagagcgccacgtgctc
tgggtcagctacgtgctcagccaagccgaggcaggggagacacctctggacgcctttcag
cttccggccagcttggcctgtgaggacgcgtccagcccggagccagagcccacagagccg
gagcctccagtggaaggaaagcaggccgccccccgggaggaggaggaggccccccagccc
cggggcaaagccatcaaaatggagcccagcccccaggagcctgaagaccgggaggacagt
ggggatgaggagccctcgggccacctggcccctcccaggcccgagttcacgtctgtcatc
cgggcaggggccctgaagcaggacctggtggggccctggagcctgacgcctcctggagac
cccccaccttccctcctgcacacgggcttcctgccgcccgtcatgcggggcctgtgcgcc
ccgggcaccatccgctacggcccggccgagctgggcctcgtgtacccgcacctgcagagg
ctgggtcccggccccgcgctccccgaggccttctaccccgccctgggcctgccctatccc
gggccgctgggcaccagggtgcagcgcaagggggactga
DBGET
integrated database retrieval system
