Sus scrofa (pig): 100517284
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Entry
100517284 CDS
T01009
Symbol
ACTN4
Name
(RefSeq) alpha-actinin-4 isoform X1
KO
K05699
actinin alpha 1/4
Organism
ssc
Sus scrofa (pig)
Pathway
ssc04510
Focal adhesion
ssc04520
Adherens junction
ssc04530
Tight junction
ssc04670
Leukocyte transendothelial migration
ssc04810
Regulation of actin cytoskeleton
ssc05146
Amoebiasis
ssc05203
Viral carcinogenesis
ssc05322
Systemic lupus erythematosus
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
100517284 (ACTN4)
04520 Adherens junction
100517284 (ACTN4)
04530 Tight junction
100517284 (ACTN4)
09142 Cell motility
04810 Regulation of actin cytoskeleton
100517284 (ACTN4)
09150 Organismal Systems
09151 Immune system
04670 Leukocyte transendothelial migration
100517284 (ACTN4)
09160 Human Diseases
09161 Cancer: overview
05203 Viral carcinogenesis
100517284 (ACTN4)
09174 Infectious disease: parasitic
05146 Amoebiasis
100517284 (ACTN4)
09163 Immune disease
05322 Systemic lupus erythematosus
100517284 (ACTN4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ssc04131
]
100517284 (ACTN4)
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
ssc04812
]
100517284 (ACTN4)
04147 Exosome [BR:
ssc04147
]
100517284 (ACTN4)
Membrane trafficking [BR:
ssc04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
100517284 (ACTN4)
Cytoskeleton proteins [BR:
ssc04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Cross-linking proteins
100517284 (ACTN4)
Exosome [BR:
ssc04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
100517284 (ACTN4)
Exosomal proteins of colorectal cancer cells
100517284 (ACTN4)
Exosomal proteins of bladder cancer cells
100517284 (ACTN4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Spectrin
CH
EFhand_Ca_insen
EF-hand_1
EF-hand_6
EF-hand_7
EF-hand_8
XisI
Motif
Other DBs
NCBI-GeneID:
100517284
NCBI-ProteinID:
XP_003127168
Ensembl:
ENSSSCG00000002965
UniProt:
F1RI39
A0A4X1T3R1
LinkDB
All DBs
Position
6:47493834..47565999
Genome browser
AA seq
933 aa
AA seq
DB search
MVDYHAANQSYQYGPSSGSNGAGGGGSMGDYMAQEDDWDRDLLLDPAWEKQQRKTFTAWC
NSHLRKAGTQIENIDEDFRDGLKLMLLLEVISGERLPKPERGKMRVHKINNVNKALDFIA
SKGVKLVSIGAEEIVDGNAKMTLGMIWTIILRFAIQDISVEETSAKEGLLLWCQRKTAPY
KNVNVQNFHISWKDGLAFNALIHRHRPELIEYDKLRKDDPVTNLNNAFEVAEKYLDIPKM
LDAEDIVNTARPDEKAIMTYVSSFYHAFSGAQKAETAANRICKVLAVNQENEHLMEDYER
LASDLLEWIRRTIPWLEDRVPQKTIQEMQQKLEDFRDYRRVHKPPKVQEKCQLEINFNTL
QTKLRLSNRPAFMPSEGKMVSDINNGWQHLEQAEKGYEEWLLNEIRRLERLDHLAEKFRQ
KASIHEAWTDGKEAMLKQRDYETATLSDIKALIRKHEAFESDLAAHQDRVEQIAAIAQEL
NELDYYDSHNVNTRCQKICDQWDALGSLTHSRREALEKTEKQLETIDQLHLEYAKRAAPF
NNWMESAMEDLQDMFIVHTIEEIEGLISAHDQFKSTLPDADREREAILAIHKEAQRIAES
NHIKLSGSNPYTTVTPQIINSKWEKVQQLVPKRDHALLEEQSKQQSNEHLRRQFASQANI
VGPWIQTKMEEIGRISIEMNGTLEDQLSHLKQYERSIVDYKPNLDLLEQQHQLIQEALIF
DNKHTNYTMEHIRVGWEQLLTTIARTINEVENQILTRDAKGISQEQMQEFRASFNHFDKD
HGGALGPEEFKACLISLGYDVENDRQKQTGSMDSDDFRALLISTGYSLGDAEFNRIMSVV
DPNHSGLVTFQAFIDFMSRETTDTDTADQVIASFKVLAGDKNFITAEELRRELPPDQAEY
CIARMAPYQGPDAVPGALDYKSFSTALYGESDL
NT seq
2802 nt
NT seq
+upstream
nt +downstream
nt
atggtggactaccacgcggcgaaccagtcgtaccagtacggccccagcagcgggagcaat
ggcgccggcggcggcggtagcatgggcgactacatggcccaggaggacgactgggaccgg
gacctgctgctggacccggcctgggagaagcagcaacgcaagaccttcacagcctggtgc
aactcccacctgcgcaaggccggcacacagatcgagaacatcgacgaggacttccgagac
gggctcaagctcatgcttctcctggaggtcatttccggggagcggttacctaagccagag
cggggcaagatgagggtgcataagatcaacaatgtgaacaaggcactggacttcatcgcc
agcaaaggagtcaagctggtctccatcggggcagaagagatcgtggacggcaatgcaaag
atgacgctgggcatgatctggaccatcatcctcaggttcgccatccaggacatctccgtg
gaggagacctctgccaaggaggggctcctcctctggtgccagcggaagacggccccgtac
aagaacgtcaatgtgcagaacttccacatcagctggaaggacgggctcgccttcaatgcc
ctgatccaccggcacagaccagagctgatcgaatatgacaagctgagaaaggacgacccc
gtcaccaacctgaacaatgccttcgaagtggctgagaagtacctagacatccccaagatg
ctggatgcggaggacatcgtgaacacggcccggcccgacgagaaggccataatgacctat
gtgtccagcttctaccatgccttttcgggagcgcagaaggccgagaccgccgccaaccgg
atctgcaaggtgctggctgtcaatcaggagaacgagcacctgatggaagattatgagagg
ctggccagcgatctcctggagtggatccggcgcaccatcccttggctggaggaccgcgtg
ccccagaagaccatccaggagatgcagcagaagctggaggacttccgcgactaccggcgt
gtccacaaaccgcctaaggtgcaagagaagtgccagctggagatcaatttcaacacgctg
cagaccaagctgcgcctcagcaaccggcccgccttcatgccctccgagggcaaaatggtc
tcggacatcaacaatggctggcagcacctggagcaggcggaaaagggctacgaggagtgg
ctgctgaatgagatccgcaggctggagcggctcgaccacttggcagagaagttccggcag
aaggcctccatccacgaggcctggactgacgggaaggaggccatgctgaagcagcgggac
tatgagacggccaccctctcagatatcaaagccctcatccgcaagcacgaggccttcgag
agtgacctggccgcacaccaggaccgcgtggagcagatcgcggccatcgcccaggagctc
aacgagctggattactacgactcccataatgtcaacacccgctgccagaagatctgcgac
cagtgggacgctcttggctctctgacccacagccgcagggaggccctggagaaaacagag
aagcagctggagaccattgaccagctgcacctggagtacgccaagcgggcagcgcccttc
aacaactggatggagagtgccatggaggacctgcaggacatgttcatcgtccacaccatc
gaggagatcgagggcctgatctcagcccacgaccagttcaagtcgacgctgccggacgcc
gaccgggaacgggaggccatcctggccattcacaaggaggcccagaggatcgccgagagc
aaccacatcaaactctcgggcagcaacccctacaccactgtcaccccccagatcatcaac
tccaagtgggagaaggtgcagcagctggtgcccaagcgggaccacgccctcctcgaggag
cagagcaaacagcagtccaacgagcacctccgccgccagttcgccagccaggccaacatc
gtggggccctggatccagaccaagatggaggagattggccgcatctccatcgagatgaac
gggacgctggaagaccagctgagccacctgaagcagtacgagcgcagcattgtggactac
aagccgaacctggacctgctggagcagcagcatcagctcatccaggaggccctcatcttt
gacaacaaacacaccaactacaccatggagcacatccgcgtgggctgggagcagctgctc
accaccatcgcccgcaccatcaacgaggtcgagaaccagatcctcacccgcgacgccaag
ggcatcagccaagagcagatgcaggagttccgggcgtccttcaatcacttcgacaaggac
cacggcggggcgctggggccggaggagttcaaggcctgcctcatcagcctgggctacgac
gtggagaatgaccggcagaagcagacaggcagcatggactccgatgacttcagggctctg
cttatctccacaggatacagcctgggcgatgccgagttcaaccgcatcatgagcgtggtc
gaccccaaccacagcggcctcgtgaccttccaagccttcatcgacttcatgtcgagggag
accacagacaccgacacagccgaccaggtcatcgcctccttcaaggtcctggcaggcgac
aagaacttcatcacggcggaggagctgcggagagagctgccgcccgaccaggccgagtac
tgcatcgcccgcatggcgccgtaccagggccccgacgctgtgcccggcgccctcgactac
aagtctttctccacagccctgtacggcgagagcgacctgtga
DBGET
integrated database retrieval system
