KEGG   Sus scrofa (pig): 100517785
Entry
100517785         CDS       T01009                                 
Symbol
WDR33
Name
(RefSeq) pre-mRNA 3' end processing protein WDR33 isoform X1
  KO
K15542  polyadenylation factor subunit 2
Organism
ssc  Sus scrofa (pig)
Pathway
ssc03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:ssc00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    100517785 (WDR33)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ssc03019]
    100517785 (WDR33)
Messenger RNA biogenesis [BR:ssc03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     100517785 (WDR33)
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40 Beta-prop_THOC3 Beta-prop_WDR3_1st WD40_CDC20-Fz WD40_Prp19 WD40_WDHD1_1st Beta-prop_EML_2 Beta-prop_WDR3_2nd Beta-prop_EML Beta-prop_CAF1B_HIR1 WD40_Gbeta WDR55 EIF3I Beta-prop_IFT140_1st Beta-prop_WDR36-Utp21_2nd Beta-prop_Aladin Beta-prop_TEP1_2nd Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd Beta-prop_WDR36-Utp21_1st ANAPC4_WD40 Beta-prop_RIG_2nd Beta-prop_WDR19_1st Beta-prop_EIPR1 WDR90_beta-prop_4th Beta-prop_WDR75_1st Beta-prop_Vps41 Beta-prop_IFT122_1st Collagen eIF2A WD40_RFWD3 Beta-prop_SCAP WD40_MABP1-WDR62_1st Beta-prop_WDR35_TULP_N Beta-prop_DCAF4 Beta-prop_HPS5 Beta-prop_WDR11_2nd Beta-prop_WDR41 Ge1_WD40 PEP5_VPS11_N
Other DBs
NCBI-GeneID: 100517785
NCBI-ProteinID: XP_020931116
UniProt: I3L6Y7 A0A8D1SGL1
LinkDB
Position
15:59519832..59639050
AA seq 1336 aa
MATEIGSPPRFFHMPRFQHQAPRQLFYKRPDFAQQQAMQQLTFDGKRMRKAVNRKTIDYN
PSVIKYLENRIWQRDQRDMRAIQPDAGYYNDLVPPIGMLNNPMNAVTTKFVRTSTNKVKC
PVFVVRWTPEGRRLVTGASSGEFTLWNGLTFNFETILQAHDSPVRAMTWSHNDMWMLTAD
HGGYVKYWQSNMNNVKMFQAHKEAIREASFSPTDNKFATCSDDGTVRIWDFLRCHEERIL
RGHGADVKCVDWHPTKGLVVSGSKDSQQPIKFWDPKTGQSLATLHAHKNTVMEVKLNLNG
NWLLTASRDHLCKLFDIRNLKEELQVFRGHKKEATAVAWHPVHEGLFASGGSDGSLLFWH
VGVEKEVGGMEMAHEGMIWSLAWHPLGHILCSGSNDHTSKFWTRNRPGDKMRDRYNLNLL
PGMSEDGVEYDDLEPNSLAVIPGMGIPEQLKLAMEQEQMGKDESNEIEMTIPGLDWGMEE
VMQKDQKKVPQKKVPYAKPIPAQFQQAWMQNKVPIPTPNEVLNDRKEDIKLEEKKKTQAE
IEQEMATLQYTNPQLLEQLKIERLAQKQAEQIQPPPSSGTPLLGPQPFPGQGPMSQIPQG
FQQPHPSQQMPMNMAQMGPPGPQGQFRPPGPQGQMGPQGPPLHQGGGGPQGFMGPQGPQG
PPQGLPRPQDMHGPQGMQRHPGPHGPLGPQGPPGPQGNSGPQGHMGPQGPPGPQGHIGPQ
GPPGPQGHLGPQGPPGTQGMQGPPGPRGMQGPPHPHGIQGGPGSQGIQGPVSQGPLMGLN
PRGMQGPPGPRETQGPAPQGMMLGHPPQEMRGPHPPSGLLGHGPQEMRGPQEMRGMQGPP
PQGSMLGPPQELRGPPGSQGQQGPPQGSLGPPPQGGMQGPPGPQGQQNPARGPHPSQGPI
PFQQQKTALLGDGPRAPFNQEGQNAGPPPLIPGLGQQGAQGRIPPLNPGQGPGPNKGDSR
GPPNHHMGPMSERRHEQSGGPEHGPERGPFRGAQDCRGPPDRRGPHPDFPDDFSRPDDFH
PDKRFGHRLREFEGRGGPLPQEEKWRRGGPGPPFPPDHREFSDGDGRGAARGPPGAWESR
RPGDERFPRDPEDPRFRGRREESFRRGAPPRHEGRAPPRGRDGFPGPEDFGPEESFDAAD
EAARGRDLRGRGRGTPRGGRKGLLPTPDEFPRFEGGRKPDSWDGNRESGPGHEHFRDAPR
PDHPPHDGHSPAGRERSSSLQGMDMASLPPRKRPWHDGPGTSEHREMEAPGGPSEDRGGK
GRGGPGPSQRVPKSGRSSSLDGDHHDGYHRDEPFGGPPGSGTPSRGGRSGSNWGRGSNMN
SGPPRRGASRGGGRGR
NT seq 4011 nt   +upstreamnt  +downstreamnt
atggctacagaaattggttctcctcctcgttttttccatatgccaaggttccaacaccag
gcacctcgacagctgttttataagcgacctgattttgcacagcaacaagcaatgcaacag
cttacctttgatggaaaacgaatgagaaaagcagtaaaccgaaaaaccatagactataat
ccatctgtaattaagtatttagagaatagaatatggcaaagagaccagagagatatgagg
gcaattcagcctgatgcaggttattataatgatcttgtcccacctatagggatgttgaat
aatcctatgaatgcggtgacaacaaagtttgttcgaacatcaaccaataaagtaaagtgt
ccagtatttgttgttaggtggactccagaaggaagacgtttggtcactggagcttctagt
ggagagttcactttgtggaatgggctcactttcaattttgaaacaatattacaggctcac
gatagcccagtgagggccatgacttggtcacataatgatatgtggatgttgacagcagac
cacggaggatatgtgaaatattggcagtcgaacatgaacaacgtcaagatgttccaggca
cataaggaggcgattagagaggccagtttctcacccacggataataaatttgctacatgc
tctgatgacggcactgttagaatctgggactttcttcgttgccatgaggaaagaattctc
cgagggcatggtgctgatgtgaaatgtgtagactggcatccaacaaaagggttagttgtt
tcaggaagtaaagatagtcaacagccaatcaagttttgggaccccaagactgggcagagt
cttgcaacactccatgcccataaaaacactgtaatggaagtgaaattaaatctcaatggc
aactggctactcacagcatcacgtgaccatctctgtaaacttttcgacatacgaaacctg
aaggaagagcttcaagtcttccgaggtcataagaaagaggctacagctgtggcctggcat
cctgttcatgaaggtctttttgccagtggaggatctgatggctctttgttattttggcat
gttggggtagagaaagaagtgggagggatggagatggcccatgaaggaatgatctggagt
ctggcttggcatcctcttggacatattctctgctcaggctcaaatgaccacactagcaaa
ttttggacccgaaaccgaccaggtgataaaatgcgagatcgatacaatttaaacctatta
cctggaatgtctgaagatggagtagaatatgatgaccttgaacctaatagcctagcagta
attccagggatgggaataccagaacaactaaaattagctatggaacaagaacagatgggg
aaagatgaatcaaacgaaattgaaatgacaattccaggtttagattggggaatggaggag
gtgatgcaaaaggatcagaaaaaagtacctcagaagaaagttccttatgcaaaacctatt
cctgctcagttccagcaggcttggatgcaaaataaggttccaattcctaccccaaatgag
gtattgaatgacagaaaagaagacattaagttggaagagaagaaaaaaacacaagcagaa
attgagcaagagatggccacgttacagtatactaacccacagcttctggagcaactgaaa
attgaaagacttgcacagaaacaggctgagcaaattcagcctcctccttcatccggaacc
cctcttctgggaccccagccctttccaggacaaggtccaatgtctcagattcctcaaggt
tttcaacagcctcatccatctcagcagatgccaatgaacatggctcaaatggggcctcca
ggtccacaaggacaatttagaccccctggaccccagggacaaatgggaccacaaggtcct
ccactgcatcagggaggtggggggccacaaggcttcatgggaccacagggaccccagggc
ccgccccaagggttgccgaggcctcaggacatgcatgggccccaaggaatgcaaaggcat
cccggaccccatggccctttaggacctcaaggaccacctggaccacagggtaattctggt
cctcaaggtcatatgggtcctcagggcccacctggcccacaaggtcacataggcccccaa
ggcccacctggtccccagggtcacttgggccctcagggacctcctggtactcaaggtatg
cagggaccacctggtcccagaggaatgcaaggacctcctcatcctcatgggatacaaggc
gggccagggtctcaagggatccaaggccctgtgtctcagggacctctgatgggattgaat
ccaagaggaatgcagggtcctccaggcccccgagagactcagggtcctgctccccagggg
atgatgctgggccacccacctcaagagatgagaggacctcatcctccaagtggactgctg
ggacatggccctcaggagatgcgaggtcctcaggagatgcgaggcatgcaggggcctcca
ccccaaggatcaatgctgggccctccccaggaattgcgagggcctccaggctcacaaggt
cagcaggggccgccccagggctctttgggacctccaccccagggtggcatgcaagggccc
cctggacctcagggacagcagaacccggcaagagggccacatccatctcaagggccaata
ccattccagcagcagaaaacagctctgctaggtgatgggccccgggcccccttcaatcag
gaaggacagaacgcaggccccccacccctgataccaggcctagggcagcagggagcacaa
ggtcgcatcccccctcttaaccctggacaaggacctggccctaacaaaggtgactcccga
ggccctccaaaccatcacatgggcccaatgtcagagaggcggcacgagcagagcggtggg
cctgaacatgggcccgagagggggcctttccggggcgcccaggactgcagggggcccccc
gacaggcgcggccctcaccctgacttccctgacgacttcagcagacctgatgacttccac
cccgataagcgctttggccaccggttacgtgaatttgaagggcgaggaggacctttacca
caagaagagaagtggaggcgggggggccccgggcctccgtttcctcctgatcacagggag
ttcagtgatggcgatggccggggtgcggcccggggccctccaggggcctgggaaagccgc
agacctggagacgaacgcttccctcgggatcctgaagacccacgttttcgagggcgcaga
gaagaaagcttcagacgaggagcccccccaagacatgagggccgcgctccccccagagga
agggatggttttcctggtcctgaagactttggaccagaggagagttttgatgctgctgat
gaagcagcccgaggaagagatctcagaggtcgaggtcggggtacccctcgaggaggaagg
aagggcttactgcccactcctgatgagttccctcggtttgaaggaggacggaaaccagac
tcctgggatggaaatagagagtcagggccaggtcatgaacatttccgtgacgctccccgc
cctgatcacccccctcacgatggtcattccccagctggcagagagcggtcctcttctctc
caaggcatggacatggcatccctaccgccccgaaagcgcccctggcatgacgggccagga
acctctgagcatagagaaatggaagccccagggggtccttctgaggaccgaggaggcaaa
ggccgagggggcccaggaccttctcagagagtgccaaagtctgggcgttccagctccttg
gatggagatcaccatgatggataccacagagatgaaccttttgggggtcctccaggcagt
ggtaccccttctagagggggccggagtggcagtaactggggtagagggagtaacatgaac
tctggcccgccaaggcgaggcgcttcaagggggggcggaaggggtcggtag

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