Sus scrofa (pig): 100517854
Help
Entry
100517854 CDS
T01009
Symbol
SUPT6H
Name
(RefSeq) LOW QUALITY PROTEIN: transcription elongation factor SPT6
KO
K11292
transcription elongation factor SPT6
Organism
ssc
Sus scrofa (pig)
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ssc03021
]
100517854 (SUPT6H)
03036 Chromosome and associated proteins [BR:
ssc03036
]
100517854 (SUPT6H)
Transcription machinery [BR:
ssc03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
100517854 (SUPT6H)
Chromosome and associated proteins [BR:
ssc03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
100517854 (SUPT6H)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SH2_2
YqgF
HHH_7
HTH_44
SPT6_acidic
Tex_central_region
Spt6_S1
HHH_3
S1
HHH_9
S1_RRP5
SH2
Tex_YqgF
Tex_N
Motif
Other DBs
NCBI-GeneID:
100517854
NCBI-ProteinID:
XP_020923139
Ensembl:
ENSSSCG00000017773
LinkDB
All DBs
Position
12:44916716..44940732
Genome browser
AA seq
1726 aa
AA seq
DB search
MSDFVESEAEESXEEYNDEGEVVPRVTKKFVEEEDDDEEEEEENLDDQDEQGNLKGFIND
DDDEDEGEEDEGSDSGDSEDDVGHKKRKRTSFDDRLEDDDFDLIEENLGVKVKRGQKYRR
VKKMSDDEDDDEEEYGKEEHEKEAIAEEIFQDGEGEEGQEAIEAPMAPPEEEEEDDEESD
IDDFIVDDDGQPLKKPKWRKKLPGYTDAALQEAQEIFGVDFDYDEFEKYNEYDEELEEEY
EYEDDEAEGEIRVRPKKTTKKRVSRRSIFEMYEPSELESSHLTDQDNEIRATDLPERFQL
RSIPVKGAEDDELEEEADWIYRNAFATPTISLQESCDYLDRGQPTSSFSRKGPSTIQKIK
EALGFMRNQHFEVPFIAFYRKEYVEPELHINDLWRVWQWDEKWTQLRIRKENLTRLFEKM
QAYQYEQISADPDKPLADGIRALDTTDMERLKDVQSMDELKDVYNHFLLYYGRDIPKMQN
AAKASRKKLKRVREEGDEEGDGEEAEDEEQRGPELKQASRRDMYTICQSAGLDGLAKKFG
LTPEQFGENLRDSYQRHETEQFPAEPLELAKDYVCSQFPTPEAVLEGARYMVALQIAREP
LVRQVLRQTFQERAKLNITPTKKGRKDVDEAHYAYSFKYLKNKPVKELRDDQFLKICLAE
DEGLLTIDISIDMKGVEGYGNDQTYFEEIKQFYYRDEFSHQVQEWNRQRTMAIERALQQF
LYVQMAKELKNKLLAEAKEYVIKACSRKLYNWLRVAPYRPDQQVEEDDDFMDENQGKGIR
VLGIAFSSARDHPVFCALVNGEGEVTDFLRLPHFTKRRTAWREEEREKKAQDIETLKKFL
LNKKPHVVTVAGENRDAQMLIEDVKRIVHELDQGQQLSSIGVELIDNELAILYMNSKKSE
AEFRDYPPVLRQAVSLARRIQDPLIEFAQVCSSDEDILCLKFHPLQEHVVKEELLNALYC
EFINRVNEVGVDVNRAIAHPYSQALIQYVCGLGPRKGTHLLKILKQNNTRLESRTQLVTM
CHMGPKVFMNCAGFLKIDTASLGDSTDSYIEVLDGSRVHPETYEWARKMAVDALEYDESA
EDANPAGALEEILENPERLKDLDLDAFAEELERQGYGDKHITLYDIRAELSCRYKDLRTA
YRSPNTEEIFNMLTKETPETFYIGKLIICNVTGIAHRRPQGESYDQAIRNDETGLWQCPF
CQQDNFPELSEVWNHFDSGSCPGQAIGVKTRLDNGVTGFIPTKFLSDKVVKRPEERVKVG
MTVHCRIMKIDIEKFSADLTCRTSDLMDRNNEWKLPKDTYYDFDAEAADHKQEEDMKRKQ
QRTTYIKRVIAHPSFHNINFKQAEKMMETMDQGDVIIRPSSKGENHLTVTWKVSDGIYQH
VDVREEGKENAFSLGATLWINSEEFEDLDEIVARYVQPMASFARDLLNHKYYQDCSGGDR
KKLEELLIKTKKEKPTFIPYFICACKELPGKFLLGYQPRGKPRIEYVTVTPEGFRYRGQI
FPTVNGLFRWFKDHYQDPVPGITPSSSSRTRTPASINATPANINLADLTRAVNALPQNMT
SQMFSAIAAVTGQGQNPNATPAQWASSQYGYGGSGGGSSAYHVFPTPAQQPVATPLMTPS
YSYTTPSQPITTPQYHQLQASTTPQSAQAQPQPSSSSRQRQQQPKSNSHAAIDWGKMAEQ
WLQEKEAERRKQKQRLTPRPSPSPMIESTPMSIAGDATPLLDEMDR
NT seq
5181 nt
NT seq
+upstream
nt +downstream
nt
atgtctgattttgtggaaagcgaggctgaagaatcangagaagaatacaatgatgaaggc
gaggtggtgccccgggtcaccaagaaatttgtagaagaggaggatgatgatgaggaggaa
gaggaggagaacctagatgatcaggatgagcaaggaaacttgaaaggctttatcaatgac
gacgatgatgaagacgaaggggaggaggatgagggtagtgactccggtgattcagaagat
gatgttggccacaagaagagaaaacgcacatcttttgatgaccgcctggaggatgatgat
tttgatctcattgaggagaatttgggtgtcaaagtcaaaagaggacaaaaataccgacgt
gtcaaaaaaatgtcagacgatgaggacgacgacgaggaggaatatggcaaggaggaacat
gaaaaagaagctattgcagaggagatcttccaggatggggagggggaagaaggccaggag
gccattgaggcccccatggctcctccagaagaggaggaggaagatgatgaagagtcagac
attgacgacttcattgtggacgatgatggacaaccactgaaaaaacccaagtggcgcaaa
aagcttcctggatacacagatgcggccctgcaagaagcccaggagattttcggcgtggac
tttgactacgatgagtttgagaaatacaatgagtatgatgaagaactggaggaagaatac
gagtatgaggacgatgaggctgagggtgagatccgggtacgtcccaagaagaccaccaag
aaacgtgtgagccgcaggagcatcttcgagatgtacgagcccagcgagctggaaagcagc
catctcacagatcaggacaatgaaatccgagccactgacctgcctgagaggttccagctc
cgttccatcccagtaaagggggctgaagatgatgaactggaagaagaggctgactggatc
tacaggaatgcctttgccacaccaaccatttctctgcaggaaagctgtgattacctagac
cgagggcagccaaccagcagcttcagtcgaaaagggcccagcacaattcagaagattaaa
gaagccctgggcttcatgcgaaatcagcattttgaggtgcctttcattgccttctaccgg
aaggagtatgtggagcccgaattgcatatcaatgacctgtggagggtgtggcagtgggat
gaaaagtggacccagctgaggattcgtaaggagaacctgacacggctgtttgagaagatg
caagcttatcagtatgagcaaatctctgctgatcctgataagccccttgctgatggcatc
cgggctctggacaccactgacatggagaggctcaaggatgtacagtcaatggatgaactg
aaagatgtctacaatcattttctgctttattatggtcgtgacatccccaagatgcagaat
gccgccaaggccagccgcaagaagctaaagcgtgttagggaagagggagatgaggaaggt
gacggtgaggaggcagaagatgaggagcagaggggaccagagctcaagcaggcttcccgc
cgagatatgtacaccatctgccagagcgctgggctagatggcctagccaaaaagtttggg
cttactcctgagcagtttggggaaaacctccgggatagctaccagcggcatgagacagaa
cagtttcctgcagagcctttggagctggccaaggattatgtttgtagtcagttccctaca
cctgaagctgtgctggaaggtgcccgctacatggtagccctgcagattgcccgggagccc
cttgtccggcaggtgctgaggcagactttccaggagagagccaagctcaatataaccccc
accaagaaaggtagaaaggatgtggatgaggcccactacgcttactccttcaagtactta
aagaacaagcctgttaaggaactgagagatgaccagttcctcaagatatgcctggctgaa
gatgaagggctgctcaccattgacatcagcatagatatgaagggagtggaaggctatggc
aatgaccagacgtattttgaagaaatcaaacagttttactaccgagatgagttcagccat
caggtgcaggagtggaaccggcagcgcaccatggccatcgagcgagctttgcagcagttc
ctctatgtgcagatggccaaagagctcaagaacaagctgctggccgaagccaaagaatat
gtcataaaggcctgtagtcgaaagctctacaactggttgagggtggcaccttatcggcct
gatcaacaagttgaggaagatgatgacttcatggatgagaaccaagggaagggcatccgg
gtcctgggcattgctttctcctccgccagagatcaccctgttttttgcgccttggtcaat
ggtgaaggagaagtgacagacttcctccggctgcctcattttactaaacggcgaactgcg
tggagagaggaagaacgggagaagaaggcacaagacattgaaactctaaagaaatttctt
ctgaacaaaaagcctcatgtggtgacagttgcaggagagaacagggacgcccagatgttg
attgaggacgtgaaacgcattgtgcatgagctggaccagggccaacagctgtcctctatt
ggggtggagctgattgacaacgaattagccattctctatatgaacagcaagaaatcggag
gcggagttccgggattaccctccagtgctgagacaggctgtctccctggcccggcgcatc
caggaccctctgattgaatttgcccaggtgtgcagctctgatgaagacatcctgtgcctc
aagtttcaccccttgcaggagcatgtggtgaaagaagagctgcttaatgccttatactgt
gaatttatcaaccgagtcaatgaggtgggggtcgatgtcaaccgtgccattgcccacccc
tacagccaggccttaatccagtatgtttgtggactgggacctcgaaaagggacccatctc
ctgaagatcctgaaacagaacaacacgaggcttgagagccggacccagctggtcaccatg
tgccacatgggtcccaaagtcttcatgaattgtgccggcttcctcaagatcgacacggcc
tccctaggggacagcactgactcatacatcgaagtccttgatggttctcgagtccaccct
gagacctacgagtgggccaggaagatggcagtggatgctctggaatatgatgaatcagcc
gaggatgccaaccctgcaggagcccttgaagagatcttggaaaacccggagcgactcaag
gacctggaccttgacgcctttgcagaagagctagagaggcagggctatggtgacaaacac
atcactctgtacgacatccgggcagaactgagctgtcgatataaggacctccggacagct
taccgctctcccaacacagaggaaatcttcaatatgttaaccaaagaaacaccggagacc
ttctacattggaaagctcatcatctgcaacgtcactggcattgcccacaggcgcccacag
ggtgagagctatgaccaggcaatccggaacgatgagacagggctatggcagtgccccttc
tgtcaacaggacaatttccctgaactaagtgaggtctggaaccactttgacagcggttca
tgcccaggccaggccattggtgtcaaaacacggctagacaatggtgtcaccggcttcatc
cccaccaaattcctcagtgacaaagtggtaaagcggccagaggagcgagtcaaggtggga
atgactgttcactgccgaatcatgaagattgacatcgagaagtttagtgcagacctgacc
tgccgcacctcagacctcatggacaggaacaacgagtggaagctgcccaaggacacctac
tatgactttgacgctgaagcagcagaccacaagcaggaggaggacatgaagcggaagcag
cagcggactacatatatcaagcgagtgattgcacacccgtccttccataatataaacttt
aagcaagcggaaaagatgatggagaccatggaccagggagacgtgatcatccgaccaagc
agcaagggtgaaaatcacctgacagtgacctggaaagtcagtgacggcatctatcagcac
gtggacgtgcgggaagagggcaaggaaaacgccttcagcctgggagccaccctgtggatc
aacagtgaggaatttgaagacttggatgagattgttgcccgctatgttcagcccatggcc
tcctttgcccgggaccttctgaaccacaagtattatcaggactgcagtggtggggaccgt
aagaaattagaggagctgctcatcaaaactaagaaggagaagcccaccttcattccctat
ttcatctgtgcctgcaaggaactgcccggcaagttcctactgggataccagccccggggt
aaacccaggattgaatatgtaacagtgactccagaaggattccggtaccggggccaaatc
ttccccactgtgaacggccttttcagatggtttaaggatcactatcaggatcctgtacca
ggcatcacccccagtagcagcagcaggacccggacacctgcttctatcaatgctacccca
gccaacatcaaccttgcagatctgacacgggctgtgaacgccttgccccagaacatgact
tcacagatgttcagtgccattgctgccgtgacgggccaaggccagaaccctaatgccacc
ccagcccagtgggcctccagccagtatggctatggcggcagtggagggggcagcagcgct
taccacgtgttcccgacgccagcccagcagccagtggccacaccgctaatgacccccagc
tactcctacacgaccccaagccagcccatcaccacgccgcagtaccaccagctacaggcc
agcaccaccccacagtctgcccaggcccagccccagccctcatccagctcccggcaacgg
cagcagcagccaaagtccaacagccatgcagccattgactgggggaagatggcggagcag
tggctgcaggaaaaggaggcagaacggcggaaacagaagcagaggctgacgccccggccc
tcccccagccctatgattgaaagcacccccatgtctattgctggcgatgccaccccgctc
ctggacgagatggatcggtag
DBGET
integrated database retrieval system
