Sus scrofa (pig): 100518521
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Entry
100518521 CDS
T01009
Symbol
SKIV2L2
Name
(RefSeq) superkiller viralicidic activity 2-like 2
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
ssc
Sus scrofa (pig)
Pathway
ssc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100518521 (SKIV2L2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssc03019
]
100518521 (SKIV2L2)
03041 Spliceosome [BR:
ssc03041
]
100518521 (SKIV2L2)
03009 Ribosome biogenesis [BR:
ssc03009
]
100518521 (SKIV2L2)
03016 Transfer RNA biogenesis [BR:
ssc03016
]
100518521 (SKIV2L2)
Enzymes [BR:
ssc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
100518521 (SKIV2L2)
Messenger RNA biogenesis [BR:
ssc03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
100518521 (SKIV2L2)
Spliceosome [BR:
ssc03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
100518521 (SKIV2L2)
Complex C
U4/U6.U5 tri-SnRNP related factors
100518521 (SKIV2L2)
Ribosome biogenesis [BR:
ssc03009
]
Eukaryotic type
Pre-60S particles
Helicases
100518521 (SKIV2L2)
Transfer RNA biogenesis [BR:
ssc03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
100518521 (SKIV2L2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
100518521
NCBI-ProteinID:
XP_003134012
Ensembl:
ENSSSCG00000016911
UniProt:
F1SLL6
A0A8D1ECP7
LinkDB
All DBs
Position
16:34478227..34605508
Genome browser
AA seq
1042 aa
AA seq
DB search
MADAFGDELFSVFEDDSTTAPGTKKDKEKEKGKWKGPPGSAEKAGKHFDGKLQTESTNIG
KTKRDADFEGTDEPIFGKKLRVEESITEDLSLADLMPRVKVQSVETVEGCTHEVALPADE
DYLPLKPRVGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALR
EKQRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGS
EVMREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLH
KQPCHVIYTDYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGD
QKGRKGGTKGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMV
EEVFSNAIDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALF
ATETFAMGINMPARTVLFTNARKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVD
EKMSPTIGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAIPG
VVEKVKNSEEQYNKIVIPNEESVVIYYKIRQQLAKLGKEIEEYIHKPKYCLPFLQPGRLV
KVKNEGDDFGWGVVVNFSKKSNVKPNSGELDPLYVVEVLLRCSKESLKNSATEAAKPAKP
DEKGEMQVVPVLVHLLSAISSVRLYIPKDLRPLDNRQSVLKSIQEVQKRFPDGVPLLDPI
DDMGIQDQGLKKVIQKVEAFEHRMYSHPLHNDPNLETVYTLCEKKAQIAIDIKSAKRELK
KARTVLQMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDL
SAEQATALLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEETYLS
SFKPHLMDVVYTWATGATFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELE
NKFAEGITKIKRDIVFAASLYL
NT seq
3129 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgctttcggggatgagctcttcagcgtgtttgaggacgactcgaccactgcg
cccggaaccaaaaaagacaaggagaaggagaaggggaaatggaaggggccaccagggtct
gcagaaaaggccggaaaacattttgatggtaaattacaaacagagtcaactaatattgga
aagaccaagagagatgcagactttgagggcacagatgaacccatttttggaaagaagctc
agggtagaagagtcaataactgaagacttaagtttggcagatttgatgcctagagtcaag
gtacaatcagttgaaactgttgaaggatgtacacatgaggttgcacttcctgccgatgaa
gattatctaccacttaaaccaagagttggaaaagctgcaaaggaatacccattcattctt
gacgcatttcaaagagaagccattcaatgtgttgacaataatcagtctgttttagtatct
gcacatacatcagcaggaaaaactgtatgcgctgaatatgccattgcattggccttaagg
gaaaaacaacgtgtaatatttactagcccaattaaggccctgagtaatcagaaatatcgt
gaaatgtatgaagaatttcaagatgttggtctgatgactggagatgttactattaatcct
acagcatcttgtcttgttatgaccacagagattttgagaagtatgctgtacagaggctct
gaagttatgcgagaagttgcttgggtcatatttgatgaaattcattacatgagagattca
gagcgtggtgttgtgtgggaagaaactattattttgcttcctgataacgttcactacgtc
tttctttcggctacaattccaaatgcccgacagtttgctgaatggatttgccacttacat
aaacagccttgtcatgtaatttacacagattatcggcctactccattgcagcactacatt
tttccagcagggggagatggtctgcaccttgtagttgatgaaaatggtgacttcagagaa
gataattttaatacagcaatgcaagtacttcgagatgctggcgatttggcaaaaggagat
cagaaggggcggaaaggaggaacaaaaggaccatcaaatgtgttcaagattgtgaagatg
attatggaaagaaattttcaacctgtaattatttttagttttagtaaaaaagattgtgaa
gcctatgcacttcaaatgaccaaattagatttcaacacagatgaagaaaagaagatggtt
gaagaagtattcagtaatgcaattgactgcttgtccgatgaagataaaaaactccctcag
gttgaacatgtacttcctctcttgaagcggggaattggtattcaccatggtggtttactt
cctattttgaaagaaactatagaaattctcttttctgaaggattgataaaggctttattt
gccacagagacttttgctatgggaattaacatgccagccagaactgttctatttacaaat
gctcgaaaatttgatgggaaggatttccgatggatttcctctggtgaatacattcagatg
tctggtcgtgctggaagaaggggaatggatgatagaggaattgtgattcttatggtagat
gaaaagatgagcccaacgattggaaaacaactacttaagggctcagctgatcctctaaat
agtgctttccatttgacctacaacatggttttgaacttactacgagtagaagaaattaat
cctgagtacatgttggaaaaatccttctaccagtttcaacattatagagcaattcccgga
gtagtagagaaggtaaagaactcagaagaacagtataataaaatagtaataccaaatgaa
gaaagtgtagtcatctattacaagattaggcagcaacttgccaagttgggtaaagaaatt
gaagaatatatccacaaaccaaaatattgcttaccatttcttcaaccaggtcgtttggta
aaggtaaagaatgaaggagatgattttggctggggtgtagtggtgaatttctcaaaaaag
tcaaatgttaagcctaattctggtgaactggatcctttatatgtagtagaagtacttctg
cgctgtagcaaagagagcttgaaaaattcagctactgaggctgcaaaaccagctaaacct
gatgagaaaggagagatgcaggttgttccagtattggtgcatctcctgtctgctatcagc
agtgttaggctttacattcctaaagaccttcgacccctggacaatagacagagtgtttta
aaatcaatacaggaagttcagaaacgctttcctgatggtgttcccttattagatcctatt
gatgacatgggcatacaagatcaaggactgaaaaaagtcatccagaaagtagaggctttt
gagcatcgaatgtattctcatccacttcacaatgatccaaatttggaaactgtgtatacg
ctttgtgaaaaaaaagcacagattgcaatagatattaaatctgcaaagcgagaactgaag
aaggcaagaactgttttacaaatggatgaactcaaatgtcgcaaacgtgttttaaggagg
ttgggatttgctacttcttctgatgtcatagagatgaaaggacgagtggcttgtgaaata
agcagtgctgatgagctccttctaactgagatgatgttcaatggccttttcaatgaccta
tctgcagaacaggcaacggcactgctgagctgctttgtgtttcaagaaaattctagtgag
atgcccaaattaacagagcagttagcaggaccacttcgtcaaatgcaggaatgtgctaaa
agaattgcaaaagtttcagcagaagccaaattggaaattgatgaggagacttacctaagc
tcatttaaacctcacttaatggatgtagtatatacctgggcaactggagctacatttgcg
catatctgcaaaatgacagatgtctttgaaggcagcataattcgctgtatgaggcgcctg
gaagaactacttcgacaaatgtgtcaagcagcaaaagccattggaaacactgagctggaa
aataaatttgcagaaggaatcaccaaaatcaagagagatattgtgtttgctgccagcctc
tacttataa
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