KEGG   Sus scrofa (pig): 100518738
Entry
100518738         CDS       T01009                                 
Name
(RefSeq) LOW QUALITY PROTEIN: neurotrophin receptor-interacting factor homolog
  KO
K12458  zinc finger protein 274
Organism
ssc  Sus scrofa (pig)
Pathway
ssc04722  Neurotrophin signaling pathway
Brite
KEGG Orthology (KO) [BR:ssc00001]
 09150 Organismal Systems
  09156 Nervous system
   04722 Neurotrophin signaling pathway
    100518738
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:ssc03000]
    100518738
Transcription factors [BR:ssc03000]
 Eukaryotic type
  Zinc finger
   Cys2His2 others
    100518738
SSDB
Motif
Pfam: zf-H2C2_2 zf-C2H2 zf-C2H2_4 zf-C2H2_15 KRAB SCAN zf-C2H2_jaz zf-C2H2_16 Zn_ribbon_8 C2CH-3rd_BIRD-IDD zf-C2H2_6 zf-met zf-C2H2_ZNF462_1st DUF7128
Other DBs
NCBI-GeneID: 100518738
NCBI-ProteinID: XP_013854341
Ensembl: ENSSSCG00000003998
LinkDB
Position
6:62833276..62882576
AA seq 1132 aa
MRGPGGPSPLRAREGTLPTPPRHLQEEEGMASGLPTAWFPEPVTFEDVTLGFTPEEWGML
DLEQKSLYREVLLENYRNLVSVEHQLSKPDVVSQLEEEEELWSVERGIPQDTFSECPEAH
LDPQFDPFPAESPLMKIEVVEVLTLNQEAARPRNAQIRALYAEDEALSPGILREPTQHLD
THPADPETARQRFREFRFEEAAGPREALARLRELCRQWLQPEMYSKEQMLELLVLEQFLD
LLPGKLRMWVASQHPADCQEAVALVEDVTWMSEEEALPTQGPGSSLQTTAQHEEDVASWP
AKAPPEAPARACKQTPKAGAPPAQRTLLECPHQGLPAPLAGTRSVTLQEPVTFLDVAVDF
SREEWGLLEPTQRTEYHDVMLETLGHLVSVGWETTLESSRLAAPMLGAPEEEPARDLQVE
EASGAASGAALPAGAPGGSDSAAVPVAPPQEAPLPGKPRRAGPAAAAPAGPGPSTGRGSL
RPALPRKGPHRRGPRVRTGPQAPCARLSQQGGGGGGPQVTFTRIRRGSQVCRCSECGKTF
SNPRYFSVHKKIHTGEKPYACQACGKAFVQSSSLTQHQRVHTGERPFECPQCGRTFNDRS
AISQHLRTHTGAKPYPCRDCGKAFRQSSHLIRHQRTHTGERPYACGKCGKAFTQSSHLIG
HQKTHSAKEASECNQCGKCFSWSPHFVTHQRTHTGEKHQGCHKCEKSFNRNSHLAEHERI
HITRKKPYACNQCGKSFSCCSKLVVHQRTHTGEKPYECTQCGKSFSQSYDLVVHQRTHTG
EKPYECKQCGKSFTQSSKLLRHQRTHTGEKPYKCHECGKSFRWNSNLIVHQRIHTGEKPY
ECTHCGKSFSQSSDFVAHKRTHTGEKPYECNQCGKSFIRSTQLIRHLRIHTGEKPYKCGQ
CDKAFTGSSHLIEHQRSHTGEKPFECNLCGKGFTGSSHLLSHQRIHSGEKPYECNDCGKA
FRQRSQLIVHQRTHTGEKPYECSHCGKAFSQRSPLIVHQRTHVGEKPYQCNMCVKAFSQR
SRLTEHQRTHTGEKPYECIDCGKAFSDRSTLTKHERTHTGEKPYECSHCEKAFSQRCQLT
RHQRIHTGEKPYECNESGKAFSYSTSLIQHEKTHXGEKPCEWMENSLPDFLY
NT seq 3399 nt   +upstreamnt  +downstreamnt
atgcggggaccgggcgggccgtcccccctcagggctcgtgaagggactctgcccactccc
ccgagacacctccaggaagaggaaggcatggcttccgggcttccgacggcctggttccct
gaaccagtgacttttgaagatgtgacgctgggttttaccccagaagagtggggaatgctg
gaccttgaacagaagtccctgtacagggaggtgttgctggagaactacaggaacctggtc
tcagtggagcatcagctttccaagccagatgtggtatctcagttagaggaggaggaagag
ctctggtcggtggagagaggaattcctcaagacaccttttcagagtgtcctgaggctcat
ctggaccctcaattcgatccttttcctgctgagagtcccctgatgaagatcgaggtcgtc
gaagtcctcacactgaaccaggaggcggctcgtccgcggaacgcccagatccgggccctc
tatgctgaagacgaggccctgagcccaggcatcctcagggagcccactcagcatctggat
acgcatccagctgaccctgagaccgctcgacagcggttccgggagttccgctttgaggaa
gcggctgggccccgcgaggcccttgcccggctgcgggagctgtgccgccagtggctgcag
cccgagatgtactctaaagagcagatgctggagctgctggtgctggagcagttcctggac
ttgctgcccgggaaactgcggatgtgggtggcgtcgcagcacccagcagactgccaggag
gcagtggccctggtggaggatgtgacctggatgtcagaggaggaggcactgcccacccag
ggccccggcagctctctccagaccacagcgcagcacgaggaggacgtggcctcttggcca
gcgaaggcaccgcctgaggccccagcccgtgcctgcaagcagacccccaaagccggggca
cccccagcacagcggactctgttggagtgtccccaccaaggactccctgcccctctggct
gggacacgaagtgtgacattgcaggaacccgtgaccttcctggacgtggccgtggacttc
agcagggaggagtgggggctgctggagccgacgcaaaggaccgagtaccacgacgtgatg
ctggagaccttgggacacctggtctccgtgggctgggagacaaccctggagagcagccgg
ctggctgcgccgatgctcggcgcccccgaggaagaaccggcccgagacctgcaagtggag
gaggcctccggggccgcctcgggagccgccctgccggccggggccccggggggctcggac
tccgcggcggtgcccgtggcgcccccccaggaagcgcccctgcccgggaagccgcgcaga
gcaggccccgccgctgccgccccggccggccctgggcccagcacaggccgcggctccctt
cggcccgcgctgcctcggaagggcccgcaccggcgtggcccgcgggttcggaccgggccg
caggctccgtgtgcgcggctgtcgcagcagggcggcgggggcggcggcccgcaggttacg
ttcacgcgcatccgcagaggcagccaggtgtgcaggtgcagcgagtgtggcaagaccttc
agcaacccccgctacttttcggtgcataagaagatccacacgggcgagaagccgtacgcg
tgtcaggcctgcggcaaggccttcgtgcagagctcctccctcacgcagcaccagcgggtg
cacaccggggagcggcccttcgagtgcccgcagtgcgggaggaccttcaacgaccgctcg
gccatctcccagcacctgcggacccacacgggggccaagccatacccctgccgggactgc
ggcaaggccttccgccagagctcgcacctcatcaggcatcaaaggacccacacgggggag
cgcccctacgcctgcggcaagtgcggcaaggccttcacccagagctcgcacctcatcggg
catcagaagacccacagcgcgaaggaagcctctgagtgtaatcaatgtgggaaatgcttc
agttggagtcctcactttgttactcatcagaggactcacactggtgagaaacaccaggga
tgtcataagtgtgaaaagtcttttaaccggaattctcaccttgctgaacatgaaagaatc
catattaccagaaagaagccatatgcttgtaatcagtgtggaaaatctttcagctgttgc
tccaagcttgttgtacaccagaggacacacactggagaaaagccctatgaatgtactcag
tgtggaaagtctttcagccagagctatgaccttgttgtacaccagaggacacacactgga
gaaaagccctatgaatgtaaacagtgtgggaaatccttcacccagagttccaaacttctt
agacatcagcgaactcacactggagaaaaaccatataaatgtcatgaatgtggaaaatct
ttcaggtggaattctaaccttatcgtacaccaaagaattcatactggagagaaaccatat
gaatgtactcattgtggaaagtccttcagccaaagttctgactttgttgcacataaaagg
actcacactggagagaaaccctatgaatgtaaccagtgtggaaagtctttcattcgaagc
actcagcttattaggcatctgagaattcacactggagagaagccatataaatgcggtcag
tgtgataaagccttcactgggagctctcaccttattgaacatcagagaagtcatactgga
gagaagccgttcgaatgcaatctttgtgggaaaggcttcactgggagctctcaccttctt
tcacatcagagaattcattctggagagaaaccatatgaatgtaatgactgtgggaaagct
tttcggcagcgatctcagcttattgtgcatcagcgaacacatactggagagaaaccttat
gaatgcagtcattgtgggaaagctttcagccagaggtctcctctcattgtgcatcagaga
acacatgttggagagaagccctatcagtgtaatatgtgtgttaaagctttcagtcagagg
tcacgccttactgaacatcagagaacacatactggagaaaagccctatgaatgtattgac
tgtggaaaagccttcagtgatcgatcaactcttacaaaacacgagagaacacatactgga
gaaaaaccctatgaatgtagtcactgtgaaaaggcctttagccagcggtgtcagcttact
aggcatcagagaattcacactggagagaaaccctatgaatgtaatgaaagtgggaaagct
ttcagttatagtacatcccttattcaacatgagaaaacccatnngggagagaaaccctgt
gaatggatggaaaactcactgccagactttctttactag

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