Sus scrofa (pig): 100518738
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Entry
100518738 CDS
T01009
Name
(RefSeq) LOW QUALITY PROTEIN: neurotrophin receptor-interacting factor homolog
KO
K12458
zinc finger protein 274
Organism
ssc
Sus scrofa (pig)
Pathway
ssc04722
Neurotrophin signaling pathway
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09150 Organismal Systems
09156 Nervous system
04722 Neurotrophin signaling pathway
100518738
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ssc03000
]
100518738
Transcription factors [BR:
ssc03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
100518738
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-H2C2_2
zf-C2H2
zf-C2H2_4
zf-C2H2_15
KRAB
SCAN
zf-C2H2_jaz
zf-C2H2_16
Zn_ribbon_8
C2CH-3rd_BIRD-IDD
zf-C2H2_6
zf-met
zf-C2H2_ZNF462_1st
DUF7128
Motif
Other DBs
NCBI-GeneID:
100518738
NCBI-ProteinID:
XP_013854341
Ensembl:
ENSSSCG00000003998
LinkDB
All DBs
Position
6:62833276..62882576
Genome browser
AA seq
1132 aa
AA seq
DB search
MRGPGGPSPLRAREGTLPTPPRHLQEEEGMASGLPTAWFPEPVTFEDVTLGFTPEEWGML
DLEQKSLYREVLLENYRNLVSVEHQLSKPDVVSQLEEEEELWSVERGIPQDTFSECPEAH
LDPQFDPFPAESPLMKIEVVEVLTLNQEAARPRNAQIRALYAEDEALSPGILREPTQHLD
THPADPETARQRFREFRFEEAAGPREALARLRELCRQWLQPEMYSKEQMLELLVLEQFLD
LLPGKLRMWVASQHPADCQEAVALVEDVTWMSEEEALPTQGPGSSLQTTAQHEEDVASWP
AKAPPEAPARACKQTPKAGAPPAQRTLLECPHQGLPAPLAGTRSVTLQEPVTFLDVAVDF
SREEWGLLEPTQRTEYHDVMLETLGHLVSVGWETTLESSRLAAPMLGAPEEEPARDLQVE
EASGAASGAALPAGAPGGSDSAAVPVAPPQEAPLPGKPRRAGPAAAAPAGPGPSTGRGSL
RPALPRKGPHRRGPRVRTGPQAPCARLSQQGGGGGGPQVTFTRIRRGSQVCRCSECGKTF
SNPRYFSVHKKIHTGEKPYACQACGKAFVQSSSLTQHQRVHTGERPFECPQCGRTFNDRS
AISQHLRTHTGAKPYPCRDCGKAFRQSSHLIRHQRTHTGERPYACGKCGKAFTQSSHLIG
HQKTHSAKEASECNQCGKCFSWSPHFVTHQRTHTGEKHQGCHKCEKSFNRNSHLAEHERI
HITRKKPYACNQCGKSFSCCSKLVVHQRTHTGEKPYECTQCGKSFSQSYDLVVHQRTHTG
EKPYECKQCGKSFTQSSKLLRHQRTHTGEKPYKCHECGKSFRWNSNLIVHQRIHTGEKPY
ECTHCGKSFSQSSDFVAHKRTHTGEKPYECNQCGKSFIRSTQLIRHLRIHTGEKPYKCGQ
CDKAFTGSSHLIEHQRSHTGEKPFECNLCGKGFTGSSHLLSHQRIHSGEKPYECNDCGKA
FRQRSQLIVHQRTHTGEKPYECSHCGKAFSQRSPLIVHQRTHVGEKPYQCNMCVKAFSQR
SRLTEHQRTHTGEKPYECIDCGKAFSDRSTLTKHERTHTGEKPYECSHCEKAFSQRCQLT
RHQRIHTGEKPYECNESGKAFSYSTSLIQHEKTHXGEKPCEWMENSLPDFLY
NT seq
3399 nt
NT seq
+upstream
nt +downstream
nt
atgcggggaccgggcgggccgtcccccctcagggctcgtgaagggactctgcccactccc
ccgagacacctccaggaagaggaaggcatggcttccgggcttccgacggcctggttccct
gaaccagtgacttttgaagatgtgacgctgggttttaccccagaagagtggggaatgctg
gaccttgaacagaagtccctgtacagggaggtgttgctggagaactacaggaacctggtc
tcagtggagcatcagctttccaagccagatgtggtatctcagttagaggaggaggaagag
ctctggtcggtggagagaggaattcctcaagacaccttttcagagtgtcctgaggctcat
ctggaccctcaattcgatccttttcctgctgagagtcccctgatgaagatcgaggtcgtc
gaagtcctcacactgaaccaggaggcggctcgtccgcggaacgcccagatccgggccctc
tatgctgaagacgaggccctgagcccaggcatcctcagggagcccactcagcatctggat
acgcatccagctgaccctgagaccgctcgacagcggttccgggagttccgctttgaggaa
gcggctgggccccgcgaggcccttgcccggctgcgggagctgtgccgccagtggctgcag
cccgagatgtactctaaagagcagatgctggagctgctggtgctggagcagttcctggac
ttgctgcccgggaaactgcggatgtgggtggcgtcgcagcacccagcagactgccaggag
gcagtggccctggtggaggatgtgacctggatgtcagaggaggaggcactgcccacccag
ggccccggcagctctctccagaccacagcgcagcacgaggaggacgtggcctcttggcca
gcgaaggcaccgcctgaggccccagcccgtgcctgcaagcagacccccaaagccggggca
cccccagcacagcggactctgttggagtgtccccaccaaggactccctgcccctctggct
gggacacgaagtgtgacattgcaggaacccgtgaccttcctggacgtggccgtggacttc
agcagggaggagtgggggctgctggagccgacgcaaaggaccgagtaccacgacgtgatg
ctggagaccttgggacacctggtctccgtgggctgggagacaaccctggagagcagccgg
ctggctgcgccgatgctcggcgcccccgaggaagaaccggcccgagacctgcaagtggag
gaggcctccggggccgcctcgggagccgccctgccggccggggccccggggggctcggac
tccgcggcggtgcccgtggcgcccccccaggaagcgcccctgcccgggaagccgcgcaga
gcaggccccgccgctgccgccccggccggccctgggcccagcacaggccgcggctccctt
cggcccgcgctgcctcggaagggcccgcaccggcgtggcccgcgggttcggaccgggccg
caggctccgtgtgcgcggctgtcgcagcagggcggcgggggcggcggcccgcaggttacg
ttcacgcgcatccgcagaggcagccaggtgtgcaggtgcagcgagtgtggcaagaccttc
agcaacccccgctacttttcggtgcataagaagatccacacgggcgagaagccgtacgcg
tgtcaggcctgcggcaaggccttcgtgcagagctcctccctcacgcagcaccagcgggtg
cacaccggggagcggcccttcgagtgcccgcagtgcgggaggaccttcaacgaccgctcg
gccatctcccagcacctgcggacccacacgggggccaagccatacccctgccgggactgc
ggcaaggccttccgccagagctcgcacctcatcaggcatcaaaggacccacacgggggag
cgcccctacgcctgcggcaagtgcggcaaggccttcacccagagctcgcacctcatcggg
catcagaagacccacagcgcgaaggaagcctctgagtgtaatcaatgtgggaaatgcttc
agttggagtcctcactttgttactcatcagaggactcacactggtgagaaacaccaggga
tgtcataagtgtgaaaagtcttttaaccggaattctcaccttgctgaacatgaaagaatc
catattaccagaaagaagccatatgcttgtaatcagtgtggaaaatctttcagctgttgc
tccaagcttgttgtacaccagaggacacacactggagaaaagccctatgaatgtactcag
tgtggaaagtctttcagccagagctatgaccttgttgtacaccagaggacacacactgga
gaaaagccctatgaatgtaaacagtgtgggaaatccttcacccagagttccaaacttctt
agacatcagcgaactcacactggagaaaaaccatataaatgtcatgaatgtggaaaatct
ttcaggtggaattctaaccttatcgtacaccaaagaattcatactggagagaaaccatat
gaatgtactcattgtggaaagtccttcagccaaagttctgactttgttgcacataaaagg
actcacactggagagaaaccctatgaatgtaaccagtgtggaaagtctttcattcgaagc
actcagcttattaggcatctgagaattcacactggagagaagccatataaatgcggtcag
tgtgataaagccttcactgggagctctcaccttattgaacatcagagaagtcatactgga
gagaagccgttcgaatgcaatctttgtgggaaaggcttcactgggagctctcaccttctt
tcacatcagagaattcattctggagagaaaccatatgaatgtaatgactgtgggaaagct
tttcggcagcgatctcagcttattgtgcatcagcgaacacatactggagagaaaccttat
gaatgcagtcattgtgggaaagctttcagccagaggtctcctctcattgtgcatcagaga
acacatgttggagagaagccctatcagtgtaatatgtgtgttaaagctttcagtcagagg
tcacgccttactgaacatcagagaacacatactggagaaaagccctatgaatgtattgac
tgtggaaaagccttcagtgatcgatcaactcttacaaaacacgagagaacacatactgga
gaaaaaccctatgaatgtagtcactgtgaaaaggcctttagccagcggtgtcagcttact
aggcatcagagaattcacactggagagaaaccctatgaatgtaatgaaagtgggaaagct
ttcagttatagtacatcccttattcaacatgagaaaacccatnngggagagaaaccctgt
gaatggatggaaaactcactgccagactttctttactag
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integrated database retrieval system