Sus scrofa (pig): 100519103
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Entry
100519103 CDS
T01009
Symbol
IFT88
Name
(RefSeq) intraflagellar transport protein 88 homolog
KO
K16474
intraflagellar transport protein 88
Organism
ssc
Sus scrofa (pig)
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
ssc03037
]
100519103 (IFT88)
Cilium and associated proteins [BR:
ssc03037
]
Primary cilia and associated proteins
Intraflagellar transport (IFT) complex B1
100519103 (IFT88)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_12
TPR_8
TPR_7
TPR_19
TPR_14
TPR_6
TPR_16
ANAPC3
TPR_11
ARM_TT21_4th
TPR_17
TPR_10
TPR_CcmH_CycH
ARM_TT21_C
TPR-S
TPR_21
HAT_PRP39_C
RPN7
HEAT_Nup120
TPR_15
ARM_TT21_2nd
Coatomer_E
DUF6584
Motif
Other DBs
NCBI-GeneID:
100519103
NCBI-ProteinID:
XP_020921093
UniProt:
A0A287A0W5
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Position
11:943444..1025617
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AA seq
817 aa
AA seq
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MMQNVHLAPDTDEDDLYSGYNDHNPTYDTEELENDTAFQQAVRTSHGRRPPITAKVPSTA
VARPVATGCGSKTSLASSMGRPGTGALQDGVTRPMTAVRAAGFTKAALRGSALDPLGQAR
GPAPPLEARSEDSPEEKIRQLEKKVNELVEESCVASSCGDLKLALEKAKDAGRKERVLVR
QREQVASPENINLDLTYSVLFTLASQYSANEMYAEALNTYQVIVKNKMFSNAGRLKVNMG
NIYLKQRNYSKAIKFYRMALDQIPSVHKEMRIKIMQNIGVTFIKTGQYSDAVNSFEHIMS
TAPNLKAGFNLILSYFALGDREKMKKAFQKLIAVALEIDEDDKYVSPSDDPHTNLVIEAI
KNDHLRQMERERKAMAEKYIMTAAKLIAPVIETSFAVGYDWCVEVVKASPYVELANDLEI
NKAVTYLKQKDFHQAAETLKMFEKKDSRVKSAAATNLSFLYYLENEFAQASSYADLAVNS
DRYNPSALTNKGNTVFANGDYEKAAEFYKEALRNDSSCTEALYNIGLTYKKLNRLDEALD
CFLKLHAILRNSAHVLYQIANIYELMEDPGQAVEWLMQLLSVVPTDSRVLSKLGGLYDSE
GDKSQAFQYYYESYRYFPSSIDVIEWLGAYYVDTQFCEKAIQYFERASLIQPTQVKWQLM
VASCFRRSGNYQKALDTYKDIHRMFPENAECLRFLVRLCTDIGLKEVQEYAAKLKRLEKM
KEIREQRVRSGRDGSRRDGSAGSDSGQNCSKSERLRAQLRALPGTDAPYESSCSREPDAS
YVDPLGPQAERPKTAAKKRLDEDDFADEELGDDLLPE
NT seq
2454 nt
NT seq
+upstream
nt +downstream
nt
atgatgcagaacgtccacctggcgcccgacacagacgaggatgacctttattccggttac
aatgaccacaacccaacctatgacaccgaggagttggagaatgacacagcttttcagcaa
gccgtgagaactagccatggccggagacctccaataaccgctaaagtaccgagcacagca
gttgctagacccgtagctactggatgtgggtccaagacctccctggcgtcgtcaatggga
agacccgggacaggggctctccaggatggagtgaccagacccatgacggccgtgcgagca
gccggatttaccaaggcggcgttgagaggctctgcactcgaccccctcggtcaggcccgt
ggccccgcgccgcccctggaggccaggagcgaggacagtccggaagaaaagattcgacaa
ttagagaagaaagtaaacgagctggtggaggaaagctgtgtcgccagcagctgtggagac
ttaaaactggccttggaaaaggcaaaagatgcgggaagaaaagagcgagtgctggtgaga
caacgagaacaagttgcaagtccagaaaacatcaacttggacttaacttactcggttctc
ttcaccttggccagtcagtattcagcgaatgaaatgtatgccgaagcgttaaacacgtat
caagttatcgtgaaaaacaagatgtttagcaatgcaggacggttgaaagtgaatatggga
aatatttatttaaagcaaagaaattattccaaagccattaaattctaccgaatggcctta
gatcagattccaagcgtccataaagaaatgaggattaaaattatgcagaacattggagtt
acatttattaaaacggggcagtattcagacgctgttaactcatttgagcatataatgagt
acggcaccaaatctgaaggcaggcttcaacctcattcttagttactttgcccttggagat
cgagagaaaatgaagaaagcattccaaaaactgattgctgttgcattagaaattgatgaa
gatgataaatatgtttcaccaagcgatgacccacatactaacttagtgattgaagctata
aaaaacgatcatttaaggcaaatggaacgtgaaaggaaagccatggcggaaaaatacatc
atgactgctgcaaaactcatcgctcctgtaattgagacgtcgtttgctgtgggttatgat
tggtgtgtcgaagttgtgaaagcctctccgtatgtagagctggcgaacgacttggaaata
aacaaagcagtcacatatttgaagcaaaaggacttccaccaggcggcggagaccttaaaa
atgttcgagaagaaggacagccgggtgaagagcgcggcggcgaccaacctctcgttcctg
tactacctggaaaatgaatttgcacaagccagtagctatgcagatttggccgttaactcc
gacagatacaatccgtcagctcttactaataaagggaatacagtttttgcaaatggtgat
tatgagaaagcagctgaattctacaaagaggctctaagaaatgattcttcttgtactgaa
gcactttataatattggccttacctataagaagctaaaccggcttgatgaagccctggac
tgtttcctgaaactgcacgcaatcctgagaaacagcgcccacgtcctttaccagatagca
aacatatacgagttaatggaggaccccggtcaagcggtggagtggttgatgcagctgctc
agtgttgttccaactgactccagagtgctgtctaagctgggaggattatacgacagcgag
ggggacaagtcccaggccttccagtattattatgagtcctacaggtacttcccgtccagc
atcgacgtcatcgagtggcttggcgcctactacgtcgacacccagttttgcgagaaagcc
attcagtactttgaaagagcttctcttatacaacctacacaagtgaaatggcagctgatg
gtagctagttgttttagaagaagtggtaactaccaaaaagcattagatacttacaaagat
attcacagaatgtttccggaaaatgctgaatgtctacgcttcttggtccgtctctgcact
gatattggcctgaaagaagttcaagaatatgcagcaaaactcaagagactggaaaaaatg
aaagaaatacgggaacagcgcgtcaggtccggcagggacggcagccgaagggacgggagc
gctggcagtgacagcggccagaactgcagcaagagcgagcggctccgcgcccagctccgc
gctctgcccgggacggacgcgccttacgagagcagctgcagcagggagccagatgcctcc
tatgtggatcctctgggcccgcaggcggagagaccaaaaacggcagccaagaagaggctc
gacgaggatgattttgcggatgaggagctaggggatgatttgcttccagagtga
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