Sus scrofa (pig): 100519212
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Entry
100519212 CDS
T01009
Symbol
TRPV1
Name
(RefSeq) LOW QUALITY PROTEIN: transient receptor potential cation channel subfamily V member 1
KO
K05222
transient receptor potential cation channel subfamily V member 1
Organism
ssc
Sus scrofa (pig)
Pathway
ssc04080
Neuroactive ligand-receptor interaction
ssc04750
Inflammatory mediator regulation of TRP channels
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
100519212 (TRPV1)
09150 Organismal Systems
09157 Sensory system
04750 Inflammatory mediator regulation of TRP channels
100519212 (TRPV1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
ssc04040
]
100519212 (TRPV1)
Ion channels [BR:
ssc04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
100519212 (TRPV1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ank_2
Ank
Ank_5
Ank_3
Ion_trans
Ank_4
CNOT1_HEAT
Motif
Other DBs
NCBI-GeneID:
100519212
NCBI-ProteinID:
XP_013836670
Ensembl:
ENSSSCG00000017863
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Position
12:complement(49676536..49709634)
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AA seq
880 aa
AA seq
DB search
MMKKWESLDAGESQQDSSPHPQDGDPTLRPAPAKPHAFPAVESHSQRFGKGDSEDASLVG
CSYEEGQLASCPAITVSPVVIIQKPGDGPTCARQPSQDSVDSENFKLYDRKKIFEAVAQN
NCEALESLLLFLQKSKKHLVDSEFKDPETGKTCLLKAMLNLHNGQNETIPLLLEIARQTD
SLKELVNASYTDSYYKGQTALHIAIERRNMALVTLLVENGADVQAAANGDFFKKTKGRPG
FYFGELPLSLAACTNQLGIVKFLLQNSWHPADISARDSVGNTVLHALVEVADNTADNTKF
VTSMYNEILILGARLHPTLKLEELTNKKGLTPLALAAKSGKIGVLAYILQREIQEPECRH
LSRKFTEWAYGPVHSSLYDLSCIDTCEKNSVLEVIAYSSSETPNRHDMLLVEPLNRLLQD
KWDRFVKRIFYFNFLVYCLYMIIFTTAAYYRPTEGLPPFKLNHTVGDYFRVIGEILSVVG
GIYLFFRGIQYFLQRRPSLKTLFVDSYSEMLFFVQSLFMLGTVVLYFCHRKEYVASMVFS
LAMGWANMLYYTRGFQQMGIYAVMIEKMILRDLCRFMFVYLVFLFGFSTAVVTLIEDGKN
DSVSTEXVHKCRGLVCRSPDSSYNSLYSTCLELFKFTIGMGDLEFTENYDFKAVFIILLL
AYVILTYILLLNMLIALMGETVNKISQESKNIWKLQRAITILDTEKSFLKCMRKVFRSGK
LLQVGYTPDGKDDYRWCFRVDEVNWTTWNTNVGIINEDPGNCEGIKRTLSFSLRSSRVAG
RNWKNFALVPLLRDASTRERHLAQPEEVHLKHIAKSLKPEDAEIVKDPXAVGEKRGTTQD
ARNPVGFKIPRCCWWRGPLRGHWRCLGSLAPPVPASQALS
NT seq
2643 nt
NT seq
+upstream
nt +downstream
nt
atgatgaagaaatgggagagcttagacgcaggggagtctcaacaggattccagtccacac
ccccaggatggggaccctaccttaagaccagctccagccaagccccacgccttccccgcg
gtcgagagccacagccagcgctttggaaagggtgactcagaggacgcgtccctcgtgggc
tgctcttacgaggaaggccagctggcatcctgcccagccatcacggtcagccctgttgtc
atcatccagaagcccggggatggccccacctgtgccaggcagccgtcccaggactctgtt
gattctgagaacttcaagctctatgatcggaagaagatatttgaggcagttgctcagaat
aactgtgaggcgctggagagccttctgctctttctgcagaagagcaagaagcatctggtg
gacagcgagttcaaagaccccgagacagggaagacctgtctgctgaaagccatgctcaac
ctgcacaacgggcagaatgaaaccatccccctgctcctggagatcgctcggcagacggac
agcctgaaggagctggtcaacgccagctacacggacagctactacaagggccagacggca
ctgcacattgccatcgagaggcggaacatggcactggtgacacttctggtggaaaacggg
gccgacgtccaggctgcggccaatggggacttctttaagaagaccaaagggcggcctggc
ttctattttggcgagctgcccctctccctggctgcgtgcaccaaccagctgggcattgtg
aagttcctgctgcagaactcctggcacccagctgacatcagtgccagggactccgtgggc
aacactgtgcttcatgcgctggtagaggtggctgacaacacggccgacaacaccaagttt
gtgacgagcatgtacaacgagattctgattctgggggccagactgcaccccactctgaag
ctggaggagctcaccaacaagaaggggctcacgccgctggctctggctgccaagagtggg
aagattggggtcttggcttatattctccagagggagatccaggagcctgagtgcaggcac
ctatccaggaagttcaccgagtgggcctacgggcccgtgcactcctcgctctacgacctg
tcctgcatcgacacctgcgagaagaactcggtgctggaggtgatcgcctacagcagcagc
gagacccctaatcgccatgacatgctcctggtggagccgctgaaccgcctcctgcaggac
aagtgggacagattcgtcaagcgcatcttctacttcaacttcttggtctactgcttgtat
atgatcatcttcaccacggccgcctactacaggcccacggaaggcctgcctccctttaag
ctgaaccacaccgtgggggactatttccgagtcattggagagatactttctgttgtaggg
ggaatctacttatttttccgagggattcagtacttcctgcagagacggccttcactgaag
accttgtttgtggacagctacagtgagatgcttttcttcgtgcagtcactgttcatgctg
ggaactgtggtgctgtacttctgccaccgcaaggagtacgtggcctccatggtgttctcc
ctggccatgggctgggccaacatgctctattacacccgtggcttccagcagatgggcatc
tatgctgtcatgattgagaagatgatcctgagagacctgtgtcgcttcatgtttgtctac
cttgttttcttgttcggcttttccacagctgtggtgacactgatcgaggatggaaagaat
gactctgtgtcgacggagngtgttcacaagtgtcgagggcttgtctgccggtcgccagac
agctcctacaacagcctgtactccacgtgcctggagctgttcaagttcaccatcggcatg
ggtgacctggagttcacggagaactatgacttcaaggctgtcttcatcatcctgttactg
gcctatgtgattctcacttacatcctcctgctgaacatgctcatcgccctcatgggcgag
actgtcaacaagatttcgcaggagagcaagaacatctggaaactgcagagagccatcacc
atcctggacacggagaagagcttccttaagtgtatgaggaaggtctttcgctcaggcaag
ctgctacaggtggggtacacacctgatggcaaggatgactacaggtggtgtttcagggtg
gacgaggtgaactggaccacctggaacaccaacgtgggcatcatcaatgaagacccgggc
aactgtgagggcatcaagcgtaccctgagcttttccctgcggtccagcagagttgcaggg
agaaactggaaaaactttgccctggttcccctcttaagagatgcaagtactcgagaaagg
caccttgcccagcccgaggaagttcatctgaaacacatcgcaaagtcgctcaagccagaa
gatgctgagatcgtcaaggatccttaggctgtaggggagaagcgagggaccacacaggat
gctcgcaaccctgtgggctttaaaataccccgttgttgctggtggcgggggccacttagg
ggccactggcggtgcctcggcagcctggccccaccagtgcctgcctcccaggccctttcc
tag
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