Sus scrofa (pig): 100519233
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Entry
100519233 CDS
T01009
Symbol
VPS41
Name
(RefSeq) vacuolar protein sorting-associated protein 41 homolog isoform X1
KO
K20184
vacuolar protein sorting-associated protein 41
Organism
ssc
Sus scrofa (pig)
Pathway
ssc04140
Autophagy - animal
ssc04148
Efferocytosis
ssc05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
100519233 (VPS41)
04148 Efferocytosis
100519233 (VPS41)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
100519233 (VPS41)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ssc04131
]
100519233 (VPS41)
Membrane trafficking [BR:
ssc04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
100519233 (VPS41)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_Vps41
Beta-prop_Vps41
zf-RING_Vps41
Clathrin
WD40_CDC20-Fz
WD40_Prp19
ANAPC4_WD40
Vps39_1
WD40_WDHD1_1st
zf_RING_Vps8_fungal
Beta-prop_EML_2
Beta-prop_HPS5
TPR_PEP5_VPS11
zf_RING_Vps8
zf-RING_5
RIG-I_C
Beta-prop_RIG_2nd
Frtz
zf-rbx1
CofB_pilin_dom
zf-RING_11
Motif
Other DBs
NCBI-GeneID:
100519233
NCBI-ProteinID:
XP_003134954
Ensembl:
ENSSSCG00000016772
ENSSSCG00000025376
UniProt:
A0A4X1UMY5
LinkDB
All DBs
Position
18:55293655..55466628
Genome browser
AA seq
854 aa
AA seq
DB search
MAEAEERETGSLEESTDESEEEESEEEPKLKYERLSNGVTEILQKDAASCMTVHDKFLAL
GTHYGKVYLLDVQGNITQKFDVSCVKINQISLDESGEHMGVCSEDGKVQVFGLYSGEEFH
ETFDCPIKIIAVHPHFLRSSCKQFVTGGKKLLLFERSWMSRWKSSVLHEGEGNIRSVKWR
GHLIAWANNMGVKIFDVTSKQRITNVPRDDVSLRPDMYPCSLCWKDSVTLIVGWGTSVKI
CSVKERHAGEMRDLPSRYVEIVSQFETEFYISGLAPLWDQLVVLSYVKEVSEKTESEYCA
RPRLDIIQPLSETCEEISSDALTVRGFQENECRDYHLEHSEGESLFYIVSPRDVVVAKER
DQDDHIDWLLEKKKYEEALMAAEISQKNIKRHKILDIGLAYINHLVEKGEYDAAARKCQK
ILGKNAALWEYEVYKFKEIGQLKAISPYLPRGDPVLKPLIYEMTLHEFLESDYEGFATLI
REWPGDLYNNSVIVQAVRGHLKKDSQNRTLLKTLAELYTYDKNYSSALEIYLTLRHKDAF
QLIHKHNLFSSIKDKIVLLMDFDSEKAVDMLLDNEDKISIKKVVEELEDRPELQHVYLHK
LFRRDHRKGQRYHEKQISLYAEYDRPNLLPFLRDSIHCPLEKALEICQQRNFVEETVYLL
SRMGNSRSALKMITQELQDVDKAIEFAKEQDDGELWEDLILYSIDKPPFITGLLNNIGTH
VDPILLIHRIKEGMEIPNLRDSLVKILQDYNLQILLREGCKKILVADSLSLLKKMHRTQM
KGVLVDEENICESCLSPVLPSDAAKPFSVVVFHCRHMFHKECLPVPSMSSPAQFCNICSA
KHRGPGSAILEMKK
NT seq
2565 nt
NT seq
+upstream
nt +downstream
nt
atggcggaagcagaggagcgggaaaccgggtctcttgaagaatctacagatgagtctgag
gaagaagaaagtgaggaggagcccaaactgaagtatgaaaggctctccaatggggtaacg
gaaatccttcagaaggatgcggccagctgcatgacagtccatgacaagttcttggccctg
ggcacgcattacggcaaagtgtatctgctggacgtgcaggggaacatcactcagaagttc
gatgtaagttgcgtgaagataaatcagataagcctggatgaaagcggagagcacatgggc
gtgtgttccgaggacggcaaggttcaggtgtttggactgtattctggagaagaatttcat
gagactttcgactgtcccattaaaatcatcgccgtgcatccacatttcctgaggtccagc
tgcaagcagttcgtgaccggcggcaagaagttgctgctgttcgaacggtcttggatgagc
aggtggaagtcgtcggttctgcatgaaggagaagggaacatcaggagcgtgaagtggagg
ggccatctgattgcctgggcgaacaacatgggtgtgaagatttttgacgtcacctcaaag
cagaggatcaccaacgtgcccagggacgatgtgagcctccgcccggacatgtacccttgc
agcctctgctggaaggacagcgtgaccctgattgttggctggggaacatctgtcaagata
tgctcggtgaaggagcggcacgccggcgagatgcgggacctaccgagtcgatacgttgaa
atagtgtctcagtttgaaactgaattctacatcagcgggctggcgcctctctgggatcag
ctggtcgtcctttcctacgtcaaggaggtttcggaaaaaacggaaagcgaatactgcgcc
aggcccagactggatatcatccagccgctctcggagacctgcgaagagatttcttctgat
gctctgactgtgaggggcttccaggaaaatgaatgcagagattatcacttagagcactcg
gaaggggagtcgctcttctacatcgtgagtccaagagatgttgtcgttgccaaggaacgt
gaccaagacgaccacatcgactggctcctcgagaagaagaaatacgaggaagctctgatg
gcagctgaaatcagccaaaagaacattaaaagacataagattctggacatcggcttggcc
tacatcaaccacctggtggagaagggggagtacgacgcagcggcacgcaaatgccagaaa
attcttgggaaaaatgcagcactctgggaatatgaagtttataaatttaaagaaattgga
cagcttaaggctattagtccttatttgccaagaggggatccagttctgaaaccactcatc
tatgaaatgaccctccatgaatttttggaaagtgattatgagggttttgccacgctgatc
cgggaatggcctggagatctgtacaacaactcggtaatcgttcaggcagttcggggtcac
ctgaagaaagacagtcagaacaggactctacttaaaaccctagcagaactgtacacctat
gacaagaactacagcagcgccttggagatatacctaaccttaagacacaaggacgccttc
cagctgatccacaagcataaccttttcagttctatcaaggataaaattgttttactaatg
gattttgattccgagaaagctgtcgacatgcttctggacaacgaagataaaatttcaatt
aaaaaggttgtggaagaattggaagacagaccggagctgcagcacgtgtatctgcacaag
cttttccggagagaccatcgtaaggggcagcgctaccacgagaagcagatcagcctctac
gccgaatacgaccgtccgaacctgctcccgtttctccgagacagcatccactgccccctg
gagaaggctcttgagatctgtcaacagaggaactttgtggaagagacagtttatcttctg
agccgcatgggcaacagccggagcgccctgaagatgatcacgcaggagctgcaggacgtc
gacaaagccatcgaattcgccaaggagcaggacgacggggagctctgggaagacctgatt
ttatattccatcgacaagccaccgtttatcaccggcttgctgaataacatcggcacccat
gttgacccaattctcctgattcaccgtattaaggaagggatggagattcctaacctgaga
gactccttggtcaaaatcctgcaagactacaatttgcagattctgcttcgtgaaggctgc
aagaagattctggtcgccgactctttgtccttactaaagaagatgcaccgaacccagatg
aaaggcgtcctggtggatgaggagaacatctgcgagtcgtgcctgtccccggtcctcccc
tcagacgcggccaagcccttcagcgtggtggtcttccactgccggcacatgttccacaag
gagtgcctgcccgtgcccagcatgagctcccctgcacagttctgcaacatctgcagcgcc
aagcaccggggcccgggaagtgccattttggagatgaaaaaatag
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integrated database retrieval system
