Sus scrofa (pig): 100519792
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Entry
100519792 CDS
T01009
Symbol
RC3H1
Name
(RefSeq) roquin-1 isoform X1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
ssc
Sus scrofa (pig)
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ssc03000
]
100519792 (RC3H1)
04121 Ubiquitin system [BR:
ssc04121
]
100519792 (RC3H1)
Transcription factors [BR:
ssc03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
100519792 (RC3H1)
Ubiquitin system [BR:
ssc04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
100519792 (RC3H1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-RING_UBOX
zf-RING_2
zf-C3HC4_4
Prok-RING_4
zf-CCCH
zf-C3HC4_3
zf-C3HC4
zf-C3HC4_2
FYVE
zf_CCCH_4
zf-CCCH_4
Vesi_VP2
PaaA_PaaC
Baculo_IE-1
zf-RING_4
zf-RING_6
zf-RING_10
Motif
Other DBs
NCBI-GeneID:
100519792
NCBI-ProteinID:
XP_003357594
Ensembl:
ENSSSCG00000015498
UniProt:
A0A8D1KX72
A0A8D1XNW3
A0A480EGK3
LinkDB
All DBs
Position
9:complement(116204807..116292455)
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AA seq
1132 aa
AA seq
DB search
MPVQAPQWTDFLSCPICTQTFDETIRKPISLGCGHTVCKMCLNKLHRKACPFDQTTINTD
IELLPVNSALLQLVGAQVPEQQPITLCSGVEDTKHYEEAKKCVEELALYLKPLSSARGVG
LNSTTQSVLSRPMQRKLVTLVHCQLVEEEGRIRAMRAARSLGERTVTELILQHQNPQQLS
SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT
SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEAGLRIAP
DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELL
ANIDPSPDAPPPTWEQLENGLVAVRTVVHGLVDYIQNHSKKGADQQQPPQHSKYKTYMCR
DMKQRGGCPRGASCTFAHSQEELEKFRKMNKRLVPRRPLSASLGQLNEVGLPSAAILPDE
AAVDLPSRKPPALPNGIVSAGNTVTQLIPRGTDPSYDSSLKPGKIDHLSSSAPGSPPDLL
ESVPKSISALPVNPHPVPPRGPADLPPIPVTKPLQMVPRGSQIYPAQQADVYYQDPRGTA
PPFEPAPYQQGMYYPPPPQCVSRFVRPPPSAPEPGPPYLDHYPPYLPDRVVNSQYGTQPQ
QYPPMYPPHYDGRRVYPAQSYTREEIFRESPVPIEIPPAAVPSYVPESRERYQQMEGYYP
VAPHPAQIRPSYTREPPYSRLPPPPQPHPSLDELHRRRKEIMAQLEERKVISPPPFAPSP
TLPPAFHQEEFLDEDLKVAGKYKGNDYSQYSPWSCDTIGSYIGTKDAKPKDVVAAGSVEM
MNVESKGMRDQRLDLQRRAAETSDDDLIPFGDRPTVSRFGAISRTSKTMYQSAGPMQAMA
PQGAPTKSINISDYSPYGTHGGWGGSPYSPHQNIPSQGHFSERERISMSEVASRGKPLPS
AEREQLRLELQQLNHQISQQTQLRGLEAVSNRLVLQREANTLASQSQPPPPPPKWPGMIS
SEQLSLELHQVEREIGKRTRELSMENQCSLDMKSKLNTSKQAENGQPEPQNKVPAEDLTL
TFSDVPNGSALTQENISLLSNKTSSLNLSEDPEGGGDNNDSQRSGVTPSSAP
NT seq
3399 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtacaagctccacaatggacggatttcctctcctgcccaatttgcactcagact
tttgatgaaacaattcgaaagcccatcagtttgggttgtggccatactgtctgcaagatg
tgcctgaataaactccaccgcaaggcttgtccatttgaccagaccactattaatacagac
attgaactcctcccagtcaactcggcattgctacagctagtgggtgctcaggtccctgag
cagcagcccattactttgtgtagtggagttgaagatacaaagcattatgaggaagccaag
aaatgtgttgaagaattagcactgtacctgaaaccactcagcagtgctagaggagtgggt
ctgaatagcactactcagagtgttctcagtcgcccaatgcagaggaagctggtgactctg
gtccactgccaacttgtggaagaagaaggcaggattcgtgccatgagggcagctcgatct
ttaggtgaacgaacagttacagaactcattctccagcaccagaatcctcagcaactctct
tccaatctttgggcagcagtccgggctaggggctgccagttccttggaccagcaatgcag
gaggaagctctaaagctggttctcctcgccttagaagatggttctgctttgtcaagaaaa
gtgttagttctctttgtggtgcaaagattggagccacgatttcctcaagcatctaaaact
agcattggtcatgttgtccaacttctttatagagcctcctgcttcaaggtcaccaaacgt
gatgaagactcttcgttgatgcagctgaaagaagaatttagaacctatgaagctctgcgt
cgagaacatgactcccagatagtgcagattgctatggaagcaggcttacgaattgcacct
gaccagtggtcctctttgctttatggagaccagtctcacaaatctcatatgcagtctatt
attgacaagttgcagaccccagcctcttttgcacaaagtgtccaggaactaacaattgct
ctccagcggactggagatccagcaaacttgaatcgactaagacctcatttggagctatta
gcaaacattgatcctagtccagatgctcctcctcctacttgggaacagctagaaaatggg
ctggttgctgtgcgtacagtggtacatggcctggttgattatatccagaatcacagcaaa
aaaggagcagatcaacagcagcctccacagcatagcaaatataaaacatacatgtgtcga
gacatgaagcagagaggaggatgtcctcgtggggccagctgtacatttgcacactcacag
gaggaactggaaaaatttcgtaaaatgaacaaacgcctggttcccagaagacccctgagt
gcctctttgggtcaacttaatgaggtgggcctgccttcagcagctatccttccagatgaa
gctgcagtggatctgcctagcagaaaaccccctgctctgccaaatggaattgtatcagcg
gggaatacagtgacacagctgattccacgagggacagaccctagctacgattctagtctg
aaaccaggaaagatagatcacctgagcagtagtgcccctggatcccctcctgacctgcta
gaatctgtccctaagagtatttccgccctgcctgtgaatccacatcctgtacctccaaga
gggccagcagacctgccccctatacctgtcaccaaaccacttcagatggtaccacgaggt
tctcagatatatccagcacagcaggcagatgtttattaccaagatcccagaggaactgct
ccaccatttgaaccagcaccttatcagcagggtatgtactaccctccaccaccacagtgt
gtgtcccgatttgtccgacctccaccatctgctcctgaacctggtcctccctacttggat
cattatccaccctacctcccagatcgtgtagtaaattctcaatatggcacacagccacaa
caatacccacctatgtatccaccacactatgacggccgtcgagtataccctgctcagtct
tacacgagagaggagattttccgagaaagtcctgtacccattgagattccacctgcagca
gtaccatcctatgtaccagaatccagagaaagataccagcagatggagggttactatcct
gtggctcctcacccagctcagatcagaccttcgtacaccagagaacctccctatagccgg
cttcctcctcctccccagccgcatcctagtctagatgagctacatcgaagacgaaaggaa
ataatggcacaactagaggaaaggaaggttatctctccacctccttttgcaccttcaccc
acattgcctcctgccttccatcaagaggaatttttggatgaagacttgaaggtagctggg
aaatacaaaggaaatgattatagccagtactcaccctggtcatgtgacaccatcggctcc
tacattggaaccaaagatgcaaaacccaaagatgttgtggcagcagggagtgtggaaatg
atgaatgtggagagtaagggaatgagagaccagcgattggaccttcagagaagagcagca
gaaaccagtgatgatgacctcatcccatttggagaccgaccaacagtatctcggtttggt
gccatttctcgaacttccaaaacaatgtatcagagtgctggcccaatgcaggctatggca
cctcagggagctcccacaaagtctattaacatttcagattacagtccctatggaacccat
ggtggctggggaggttctccatattcacctcatcaaaacataccttctcagggacacttc
agtgagagggagagaatatctatgtcagaagtggccagtcgtggaaaaccccttccatct
gctgagagggaacagctacgactagaattacagcaactaaaccatcaaattagccaacag
acccagctacgtggactagaggctgttagtaacaggctggtgttgcagagggaggcgaac
accctggcaagccagtcacagcccccaccaccacctccaaaatggcctggaatgatctca
agtgagcagttgagcttggaattgcaccaggtggaaagggaaatcgggaagagaacccga
gaactgagtatggagaaccagtgttctctggacatgaaaagcaaattgaatacaagtaag
caagcagaaaatggacaaccagaaccacaaaataaagttccagctgaggaccttacattg
acattcagtgatgtgccgaatggatcagccttgacacaagagaatatcagcctcctatca
aacaagaccagctctctgaacctgtcagaggaccccgagggaggaggggacaataatgac
tcccagagatcaggagttacacccagttctgctccctaa
DBGET
integrated database retrieval system
