Sus scrofa (pig): 100519806
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Entry
100519806 CDS
T01009
Symbol
CHD6
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 6 isoform X1
KO
K14436
chromodomain-helicase-DNA-binding protein 6 [EC:5.6.2.-]
Organism
ssc
Sus scrofa (pig)
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ssc03036
]
100519806 (CHD6)
Chromosome and associated proteins [BR:
ssc03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
100519806 (CHD6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD6-9
Chromo
Helicase_C
ResIII
HTH_CHD1_Hrp3
DEAD
MUN
Chromo_MIT1
Motif
Other DBs
NCBI-GeneID:
100519806
NCBI-ProteinID:
XP_020933527
LinkDB
All DBs
Position
17:complement(44048056..44265472)
Genome browser
AA seq
2739 aa
AA seq
DB search
MIMKIQKKEKQLSHVKVLSHSPMSDASVTFDYKSPSPCDHSTDQEEKIEDVASHCLPQKD
LYAAAEDTEALFPRKTTSHNGLEDSGGGGTGVKKKRKKKDPGEQEGAAKGSKDREPKPKR
KREPREPKEPRKAKEPRRPKEPKEPKQKDGIKKARKPREASGPKEAKEKRSSTDSAVRTK
SRKASKEQGPTPVEKKKKGKRKSETTVESLELDQGLPNPSLRSPEESTESADSQVQKRRS
GRQVKRRKYNEDLDFKVVDDDGETIAVLGAGRASALSASTLAWQAEEPPEDDANIIEKIL
ASKTVQEVHPGEPPFDLELFYVKYRNFSYLHCKWATMEELEKDPRIAQKIKRFRNKQAQM
KHIFTEPDEDLFNPDYVEVDRILEVAHTKDAETGEEVTHYLVKWCSLPYEESTWELEEDV
DPAKVKEFESLQILPEIKHVERPASDSWQKLEKSREYKNSNQLREYQLEGMNWLLFNWYN
RKNCILADEMGLGKTIQSITFLSEIFLRGIHGPFLIIAPLSTITNWEREFRTWTEMNAIV
YHGSQISRQMIQQYEMVYRDAQGNPLSGVFKFHVVITTFEMILADCPELKKIHWSCVIID
EAHRLKNRNCKLLEGLKLMALEHKVLLTGTPLQNSVEELFSLLNFLEPSQFPSETAFLEE
FGDLKTEEQVKKLQSILKPMMLRRLKDDVEKNLAPKQETIIEVELTNIQKKYYRAILEKN
FSFLTKGANQHNMPNLINTMMELRKCCNHPYLINGAEEKILEDFRKTHSPDAPDFQLQAM
IQAAGKLVLIDKLLPKLIAGGHKVLIFSQMVRCLDILEDYLIQRSWLLLGDEKFVHFPSG
LVRYTYERIDGRVRGNLRQAAIDRFCKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSD
WNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQDINRKGS
TNGVQQLSKMEVEDLLRKGAYGALMDEEDEGSKFCEEDIDQILQRRTHTITIQSEGKGST
FAKASFVASGNRTDISLDDPNFWQKWAKIAELDTEAKSEKESLVIDRPRVRKQTKHYNSF
EEDELMEFSELDSDSDERPTRSRRLNDKTRRYLRAECFRVEKNLLIFGWGRWKDILTHGR
FKWHLNEKDMEMICRALLVYCVKHYKGDEKIKSFIWELITPTKDGQAQTLQNHSGLSAPV
PRGRKGKKTKNQLLLPELKNADWLATCNPEVVLHDDGYKKHLKQHCNKVLLRVRMLYYLK
AEILGEAADKAFEGTPARELEVPLPDIDYVEIPADWWDAEADKSLLIGVFKHGYERYNAM
RADPALCFLEKVGMPDEKSLSAEQGVTDGTSDIPERGNMDKEDNTEDKVDGLQKQMESSS
DGVDGLFGEKKDDSRAAQDGSDPDKSPWPVPSALTARLRRLVTVYQRCNRKELCRPEILG
PGNQGYWVQEEMFRRTSEMDLINKEAQKRWTRREQADFCRAVSSFGVVYDQEKKTFDWTQ
FRIISRLDKKSDESLEHYFHSFVAMCRTVCRLPAWKDGGPPDPSIYVEPITEERAARTLY
RIELLRKIREQVLKCPQLHERLQLCRPSLYLPVWWECGKHDRDLLIGTAKHGLSRTDYYI
MTDPQLSFLDAYRNYAQHKRTDAQAPESLCCLYQTNSKLYESLTYTQMSRTSESLENEPE
NLVKLEGRDDHLGLPRNSLSDMTCENFISKVQDVISITHEESLLPESLESMMYGRKALGQ
GPGPFQESPGTSAESRQEALAISASKDGNCQPGGHEADIASGPSFMDTLEAGVAQMNIKN
GKHLLMSLSKEGELCCSEAGQRPESIGQLEPKCLASPSLDQGSESGFVDMCNLSVCDSKR
NLSSDQQLIDLLENKSLESKLILSQNHSDEEEEEEENEEENLDLVTSMRERPEVSPLTEP
AAHRAGEKSRGFLADEAKKASLEARSQHPGPQGTFLPAACQCHCKHTERWMHGLESDEFE
VEKPPGYNPDPYRSKASSVTTEGEPPAVPSELFQVKHELLKEPWKESAEGKQGFPAYPEG
NELKLEDMDFESKDDYDRDGNCQSQDYPGKYSEEESKSSASGIAGDLGEDLQEVRAPTIA
QLLQEKTLYSFSEWPKDRVIINRLDNICHLVLKGKWPSTQQYEPSAMLPTPVLTSSAGSR
SSLSEPEATEHSFSNGAALVAQMQKESFLAPVFAKDEQKHRRPYEFEVEREAKTRSLEQF
SAPHGHPPIVLNGWHGESAIDLSCTSEGSPGATPPFPVSASTPKMGAIGSLQGALGMDLS
GILQAGLIHPVTGQIVNGSLRRDDAATRRRRGRRKPVDGGVDLIFLKEQTLQAGILEVHE
DPGQTPLSTSHPPEGPVPATSTPEPAPAAGSQAEKAMPGRSLLDWLRQQADYSLEVPGFG
ANFSDKPKQRRPRCKEPGKLDVSCLSGEERVPAVPKEPGLRGFLPENKFNHTLPEPVLRD
AGPRRRGRRPRSELLKAPALVADSPSGMGPLFMNGLIAGMDLVGLQNMRNMPGIPLTGLV
GFPAGFAAMPTGEEVKGTLSMLPMVLPGMATVPQMFGVGGLLNAPMATTCTSTAPAPLSS
TTKSGTSVAEKTAEDKPSGHDVKTDTLADDKPGPSPFSDQSEPAITASSPVAFNPFLIPG
MSPGLIYPSMFLSPGMGMALPAMQQARHSEVVGLESQKRKRKRTKGDNASPNPEPAPGAE
REPGSDQSCPEPRASVPPDRDHVAQAREGGPQDSNGDTN
NT seq
8220 nt
NT seq
+upstream
nt +downstream
nt
atgataatgaaaatacagaagaaagagaagcagttgtcacatgtaaaagttctgagtcac
tccccaatgtctgatgcctctgtcacttttgactacaaatccccctccccgtgtgaccac
agcactgatcaggaggagaaaatcgaagatgtggccagtcactgtctgccccagaaggac
ctgtacgctgctgcagaggatactgaggcccttttccccaggaaaacgacgtcccataac
gggttggaggacagtggaggaggtggcactggcgtgaagaagaaacggaagaaaaaggat
ccaggagagcaagagggggcggcaaagggaagcaaggacagggagcccaagccaaagagg
aagcgagaacctagagagccaaaggagcccaggaaggccaaggagcccaggaggcccaag
gagcccaaggagcccaagcagaaggacgggatcaagaaggcacggaagccccgggaggcc
tcgggccccaaggaggccaaagagaagaggagcagcacagactctgcagtccggacgaag
tccaggaaggccagcaaggagcaaggaccaacccctgtggagaaaaagaagaaaggaaaa
aggaaaagtgaaaccacagtggagagtttagagctggatcagggcctgccgaacccatcc
ctgcggagtcctgaggaatccactgagtctgcagacagccaggtacagaaacgacgctcg
gggcggcaagtgaagcgcagaaagtacaacgaggacctggacttcaaagtggtggatgat
gacggggagaccatcgccgtcctcggggccggccgcgcgtccgccctctcagcttccaca
ctggcttggcaggcggaggagcctccagaagatgacgcaaatatcattgagaagatcttg
gcatctaaaactgtccaggaggttcacccaggagaacccccattcgacttggagctgttc
tacgtcaagtatagaaatttttcctacttacactgtaaatgggccacaatggaggagctc
gaaaaggatcctcgcatcgcacagaagatcaagcgatttaggaataaacaagcccagatg
aagcacatttttactgagcctgacgaagacttgttcaacccagactatgtggaggtcgat
cgcatcttggaggtggcccacaccaaggatgcagaaacaggagaggaagtgacgcattac
ctggtgaagtggtgctcactgccttatgaagaaagcacgtgggagctggaggaagacgta
gatcctgcaaaagtgaaagaattcgaatctctgcaaattctccctgaaattaagcatgtg
gagcgccctgcttcagactcctggcagaaacttgagaagtctcgagaatataagaacagt
aaccagctccgggagtaccagctagaggggatgaactggcttctttttaactggtataac
agaaaaaactgcattttggctgatgagatgggcctggggaaaaccatccagtccatcaca
ttcctttcagaaatattcctcaggggaatccacggccctttcctcatcatcgccccgctc
tccaccatcaccaactgggagcgggagttccggacatggacagagatgaacgccatcgtg
taccacggcagccagatcagcaggcagatgatccagcagtatgagatggtgtacagagac
gcacagggaaaccccctgtcaggagtcttcaagttccatgttgtcattacaacatttgag
atgatcctggcagactgcccggagctgaagaagattcactggagctgtgtgatcattgat
gaagcccacagattgaagaataggaactgcaagcttctggagggcctgaagctcatggcc
ctggaacataaggtgctgctcacggggacgcccctgcagaactcggtggaggagctcttc
agtctgctcaacttcctggagccgtctcagtttccctcagagactgctttcttggaggag
tttggagatctgaaaacagaggagcaggtgaagaaactgcagtctatcctaaaaccaatg
atgcttcggcggctgaaagatgacgtggaaaagaaccttgctcccaaacaagagacgatc
atcgaagtagagctgactaatatccagaaaaagtactaccgcgccatcctggagaagaac
ttctccttcctgaccaagggggccaatcagcacaacatgcccaatctcatcaacaccatg
atggagctgaggaagtgctgtaaccacccctacctgatcaacggagcagaagagaaaatt
ctggaagacttccggaaaacccacagccccgatgcccccgactttcagctgcaggccatg
attcaagcagcggggaagctcgtgctgattgataagctgctccctaagctgattgctggt
ggccacaaagttctcatcttctcccagatggtgcgctgtctcgatatcctggaagattac
ctcatccagagaagctggttattgctgggagacgagaagtttgttcatttcccttcaggc
cttgtgagatacacctatgagcgaattgatgggcgagtacggggaaacctgcgccaggca
gccatcgaccggttctgtaagccagactcagaccgctttgtctttcttctgtgcacccga
gcgggaggcctggggatcaatctcacagctgccgatacctgcatcatatttgattcagac
tggaacccacaaaatgacttgcaggcccaggcccgatgtcaccggataggccagagtaaa
gccgtgaaggtgtaccgcctcatcactcggaactcctacgagcgggagatgtttgacaag
gccagcctgaagctgggcctggacaaggctgtccttcaggacatcaaccgaaagggcagc
accaacggagtacagcagctttcaaaaatggaggtagaggacttgctccggaaaggtgca
tatggtgccttaatggacgaggaagacgaaggctccaagttctgtgaagaagacatagac
cagattctgcagaggcgaacacacaccatcaccatccagtctgaaggcaaaggatccact
ttcgccaaggctagctttgtggcttcaggaaacagaacggatatttccttagatgaccca
aacttttggcagaaatgggctaaaatagctgaactggacactgaagcaaagagtgaaaag
gaaagcttggtgatcgaccgtccacgcgtgaggaagcagaccaaacactataactctttt
gaggaggatgaactcatggagttttcagagttggacagtgactctgatgagaggcccaca
aggtccaggcgcctcaatgacaaaaccaggcgctacctccgggctgagtgcttccgggtg
gagaagaacctgctcatctttggctggggccggtggaaggatatcctgactcatgggcga
ttcaagtggcatctgaatgagaaggacatggagatgatttgccgagccctgctggtgtac
tgtgtcaagcactacaagggggatgagaagatcaagagtttcatttgggaattgatcaca
cctactaaagacgggcaggcccagacgctgcagaaccactcagggttgtccgccccagtc
ccccgagggaggaaggggaagaaaaccaagaaccagctgctgctcccagagttgaagaac
gcagactggctggccacctgtaaccccgaggtggtcctgcatgacgatggctataagaag
cacctcaaacagcactgcaacaaggtacttttgcgagtccggatgctttactacctaaaa
gctgaaatactgggggaagcagctgataaagcatttgaaggaactcccgccagggagctg
gaagtgcctctgcccgacattgactatgtggagatcccagcagattggtgggatgcggag
gccgataagtcacttctgattggcgtgttcaaacacggttacgagaggtacaacgccatg
cgagcggacccggctctttgcttcctggagaaggttgggatgccggatgagaagtccctt
tctgcagagcagggtgtcacggatgggacctcggacattcccgaaagaggcaacatggat
aaagaagacaatacagaagacaaggtggatggcctccagaaacaaatggagagttccagt
gatggagttgatggcctttttggtgaaaagaaggatgacagccgggcagcccaggatggc
tccgacccagacaaatcgccctggccagttccatctgccctcacagcccgtctccgacgc
ctagtcactgtctaccagcgctgtaaccgcaaggagctctgccgacctgaaatcctgggc
ccaggaaaccaaggatactgggtccaggaagagatgttccggagaacctcagagatggat
ctcatcaacaaggaagctcagaagaggtggaccaggagagagcaagcggacttctgcaga
gcagtatcctccttcggtgtcgtttatgatcaagagaagaaaaccttcgactggactcag
tttcgcatcatctcccgtttggacaagaagtcggacgagagcctggagcactatttccac
agctttgtggccatgtgccgcaccgtctgccgtctgccagcgtggaaggatggtggccct
cccgatcccagcatctacgttgaacccatcactgaagaacgggccgcgagaaccctgtac
cgcattgaactgttacggaagattcgggagcaggtgctgaagtgccctcagctgcacgag
cgcctgcagctctgcaggcccagcctctacctccccgtctggtgggagtgcgggaagcac
gatcgggacctgctgatcggcactgccaagcacgggctgagccgcacggactattacatc
atgactgacccccagctgtccttcctggacgcctacagaaactatgcccagcacaaaaga
accgacgcccaggcgccagaaagtctctgttgcctttaccagaccaactccaaactatat
gaatctcttacgtatactcaaatgagcaggacttctgagtcccttgaaaatgaacctgag
aatctagtgaaactcgaaggtagggatgatcatcttggtctgcccaggaacagcttatct
gacatgacttgtgaaaactttatttctaaagttcaggatgtcatttccatcacccatgag
gaaagtctgctgcctgagtccttggagagcatgatgtatggcaggaaggctctgggccag
gggccaggcccttttcaggagagcccaggtaccagtgcggagtccagacaagaagctttg
gccatctcggcaagcaaagatgggaactgccagcccggtggccatgaggcagatatagcc
tcaggcccctcttttatggatactttagaagcaggagttgctcagatgaacattaaaaat
ggaaaacatttgttgatgtctctctcaaaggaaggggaactctgctgcagcgaggcaggg
cagagacctgaaagcattgggcagctggagcccaaatgcttagcctccccttccttggat
caaggaagtgagagcgggtttgtagacatgtgcaatctgagtgtctgtgactccaaaaga
aacctgtcatcagatcagcagttaattgatttattagaaaacaaaagtttagaaagtaaa
ttgattttgagtcagaaccacagtgatgaggaggaggaagaggaggaaaacgaggaggaa
aacctagacctggtcaccagcatgcgggagaggccggaggtgtcacctctcaccgagccc
gctgctcacagggcaggagagaagagccgcggcttccttgcagacgaagccaagaaagca
agcctggaggccaggagccagcaccctgggccgcagggcacttttctccctgcagcctgt
cagtgtcactgcaaacacacggagaggtggatgcatggcctggagagcgacgagtttgaa
gtagagaaacccccgggttataacccagacccgtacagaagcaaagccagcagtgtcaca
acggagggtgagccccctgccgtcccctcagagctgtttcaggtgaagcatgaacttcta
aaagaaccctggaaggaaagtgcagaaggaaagcaagggtttcctgcgtatcccgaaggg
aatgagctcaagttggaagatatggattttgagagtaaagatgattatgatagagacgga
aactgccagagtcaagattatccagggaaatactctgaggaagagagcaagagctcagcc
tcgggcatcgcgggagacctcggggaggacctccaggaggtgcgggctcccaccatcgct
cagctgctccaggagaaaaccctctactccttctccgagtggccaaaggatcgtgtgatc
atcaaccgcctcgataatatctgccacctggtgttaaagggaaagtggccctccacccag
cagtacgagccctcggccatgctgcccacccctgtgttaaccagcagtgctggttcccgg
agcagcctctcggagccagaggccacagaacacagcttcagcaatggcgcagcgttggtg
gcccagatgcaaaaggagagcttcttggctccggttttcgcaaaggatgaacagaagcac
cggcgtccttatgagtttgaggtggagagggaggcaaagactcggagcctggagcagttc
tctgccccccatgggcacccccccattgtcctcaacggctggcatggagagtcagccatc
gacctgtcctgcacgtcggaggggtccccaggagccacaccccctttcccagtgagcgcc
agcacccctaagatgggggctatcggctcgcttcaaggagcccttggcatggacttgtct
gggattctgcaggctggcctcatccatccagtgaccggacagatcgtcaacggaagcctc
aggagagacgatgctgccacgaggaggcggagagggcgacggaaacctgttgacggaggg
gtggacctcatcttcctgaaggagcagacacttcaggcgggaatcttggaggtccacgaa
gacccagggcagactcccctgagcacctcacacccccctgaagggccagtgcctgccacg
tcgaccccggagccagccccggcagccggcagccaggccgagaaggccatgcccggcagg
agcctgctggactggctgcggcagcaggccgactactccttggaagttcctggcttcggc
gcaaatttttcagacaaaccaaagcagaggaggccacgctgtaaggaacctggaaagtta
gacgtcagctgcctgagcggggaagaaagggttcctgctgtccccaaggagccaggcctg
agggggtttctcccagaaaacaagttcaatcacaccctgcctgagcctgttctccgagac
gcgggcccccgccgcaggggcaggcggccccggagcgagctcctaaaggctcccgccctc
gtggcggactccccctctggaatggggcctctgttcatgaacggactgatcgccgggatg
gacctggtcggacttcagaacatgagaaacatgccaggcatccccctcacggggctggtg
gggttcccggctggctttgccgccatgcccacgggcgaggaggtcaagggcacgttgagc
atgctgcccatggtgctgccgggaatggccaccgtgccccagatgtttggggtcgggggg
ctcctcaatgcccccatggccaccacctgcacttcgactgcacccgcacctctgtcaagc
acaacaaagagtggcacgtcggtggccgaaaagactgcagaagacaagcccagcggccac
gatgtaaaaacggacacgttagctgacgacaagcctggtcctagtccgttttccgaccag
tccgaacctgcaataactgcgagcagtcctgtggcttttaacccgtttctcatcccagga
atgtcccccggactcatttacccatctatgtttctctcccctggcatgggcatggctctg
ccagccatgcagcaggccagacactctgaggtggtgggtctggagagccagaagaggaag
aggaagagaacaaagggggacaatgcgagccccaacccggagcctgcccccggggccgag
agggagccgggcagtgaccagagctgccccgaacccagggcctctgtgcccccagataga
gaccacgtggcacaggccagggaagggggcccccaagactcaaatggcgacaccaattag
DBGET
integrated database retrieval system
