Sus scrofa (pig): 100520162
Help
Entry
100520162 CDS
T01009
Symbol
HOXA1
Name
(RefSeq) homeobox protein Hox-A1 isoform X1
KO
K09301
homeobox protein HoxA/B/D1
Organism
ssc
Sus scrofa (pig)
Pathway
ssc04550
Signaling pathways regulating pluripotency of stem cells
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04550 Signaling pathways regulating pluripotency of stem cells
100520162 (HOXA1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ssc03000
]
100520162 (HOXA1)
Transcription factors [BR:
ssc03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain ANTP: HOXL
100520162 (HOXA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Homeodomain
Homeobox_KN
DUF7255
PHC2_SAM_assoc
Motif
Other DBs
NCBI-GeneID:
100520162
NCBI-ProteinID:
XP_003134892
Ensembl:
ENSSSCG00000016707
UniProt:
F1SHS9
A0A8D1HKB6
LinkDB
All DBs
Position
18:45477561..45480306
Genome browser
AA seq
336 aa
AA seq
DB search
MDNARMSSFLEYPILSGGDSGTCSARAYPSDHGITTFQSCAVSANSCGGDDRFLVGRGVQ
ISPPHHHHHHHHHHHPQPATYQTPGNLGVSYSHSSCGPSYGAQNFGAPYSSYALNQEAEV
SGGYPTCAPAVYSGNLSSPMVQHHHHHQGYAGGAVGSPQYIHHSYGQEHQSLALATYNNS
LSPLHASHQEACRSPASETSSPAQTFDWMKVKRNPPKTGKVGEYGYVGQPNAVRTNFTTK
QLTELEKEFHFNKYLTRARRVEIAASLQLNETQVKIWFQNRRMKQKKREKEGLLPISPAT
PPGSEEKAEESSEKSSSSPCVPSPGSATSDTLPTSH
NT seq
1011 nt
NT seq
+upstream
nt +downstream
nt
atggacaatgcaagaatgagctccttcctggaataccccatcctcagcggtggcgactcg
gggacctgctcagcgcgagcctacccctccgaccatggaattacaactttccagtcgtgc
gcggtcagtgccaatagctgtggcggcgacgaccgcttcctagtgggcaggggggtgcag
atcagcccgccccaccaccaccaccaccaccaccaccatcaccacccccagccggccacc
taccagactcctgggaacctgggggtgtcctactcccactcgagttgtggtccaagctac
ggcgcgcagaactttggcgcgccttacagctcctacgcgttaaatcaggaagcagaagta
agtggtgggtaccccacgtgcgctcccgctgtttactctggaaatctctcatctcccatg
gtccagcatcaccaccaccaccagggttatgccgggggcgcggtgggctcgcctcaatat
attcaccactcatatggacaagagcatcagagcctggccctggccacgtataataactcc
ttgtcccctctccacgccagccaccaagaagcctgccgctcccctgcatcagagacgtct
tctccagcgcagacatttgactggatgaaagtcaaaaggaaccctcccaaaacagggaaa
gttggcgagtacggctacgtgggtcagcccaacgcggtgcggaccaacttcaccaccaag
cagctcacggagctggagaaggagtttcacttcaataagtacctgacgcgggcccgcagg
gtggagatcgccgcgtccttgcagctcaatgagacccaggtgaagatctggttccagaac
cgccgaatgaagcagaagaaacgagagaaggagggcctcttgcccatctctccagccacc
ccaccgggcagtgaggagaaggccgaggaatcctccgagaagtccagctcctcgccctgc
gttccttccccggggtctgctacctcagacactctacctacctcccactga
DBGET
integrated database retrieval system
