Sus scrofa (pig): 100520173
Help
Entry
100520173 CDS
T01009
Symbol
IGHMBP2
Name
(RefSeq) LOW QUALITY PROTEIN: DNA-binding protein SMUBP-2
KO
K19036
ATP-dependent RNA/DNA helicase IGHMBP2 [EC:
5.6.2.5
5.6.2.3
]
Organism
ssc
Sus scrofa (pig)
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ssc03009
]
100520173 (IGHMBP2)
03012 Translation factors [BR:
ssc03012
]
100520173 (IGHMBP2)
Enzymes [BR:
ssc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
100520173 (IGHMBP2)
5.6.2.5 RNA 5'-3' helicase
100520173 (IGHMBP2)
Ribosome biogenesis [BR:
ssc03009
]
Eukaryotic type
Other ribosome biogenesis factors
100520173 (IGHMBP2)
Translation factors [BR:
ssc03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
100520173 (IGHMBP2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
SMUBP-2_HCS1_1B
R3H
AAA_30
AAA_19
zf-AN1
ResIII
DEAD
Viral_helicase1
nSTAND3
AAA_16
AAA_22
UvrD-helicase
Helicase_RecD
IstB_IS21
AAA_25
SLFN-g3_helicase
PhoH
Flavi_DEAD
VWA_2
DnaB_C
Zot
AAA
NPHP3_N
ABC_tran
ATPase
DAP3
SRP54
AAA_18
NTPase_1
Motif
Other DBs
NCBI-GeneID:
100520173
NCBI-ProteinID:
XP_020938351
Ensembl:
ENSSSCG00000012878
LinkDB
All DBs
Position
2:complement(4169510..4194699)
Genome browser
AA seq
1060 aa
AA seq
DB search
MSSERCGCKQTPAVRRCPAGRRPPRPPPSFCSLGRERKRKRLEPGASTHRARPEAPPRAT
AVPRRLRPGPGGAMASAAVESFVIKQLDLLELERSAEVEERRSWQENVSLKELQSRGVCL
LKLQVSSQRTGLYGRLLVTFEPRRCASAAVLPSNSFTSGDIVGLYDEDSQLATGVLTRIT
QKLVTVALDASHDFQLSLDRERSYRLLKLANDVTYKRLKKALTTLQKYHSGPASALIEVL
FGASAPSPASDIPPLTFYNTALDASQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQ
AVKQGSKVLCCAPSNVAVDNLVERLARWKQRIVRLGHPARLLESIQQHSLDAVLARSDGA
QVVADIRRDIDQVLGKTKKTQDKREKSHFRDEIKLLRKELKEREEAAMLESLTAARVVLA
TNAGASSDGPLKLLPDGYFDVVVIDECAQALEASCWVPLLKARKCILAGDHKQLPPTIIS
HKGGAAGLALSLMERLVEERGAGVLRMLTVQYRMHXAIAQWASEALYHGRLTAHASVAGH
LLRDLPGVAATEETGIPLLLVDTAGCGLFELEEEDEQSKGNPGEVRLVRLHVQALVDAGV
PAGDVAVITPYNLQVDLLRQSLAQRHPELEIKSVDGFQGREKEAVILSFVRSNRKGEVGF
LAEDRRINVAVTRXRRHVAVVCDSRTVSNHTFLKTLVAYFAEHGEVRTAFEYLDDLVPEN
YSHEGSQGHSRAGAKAQGSAPPARRAPGSRQPAGARPGCKKPGGTPSDSEAPPQPSLSGG
GPQGAGSRDGADHLRATIVEFVSSEKTQLAFPASLNSHDRLRVHQMAEELGLRHDSAGEG
RERFITVSKRAPPAPAAXATPAEAGSKAPLCPEPPSPAHTEAPVGAQSSQNQLDLKALHL
ERLQRARSRQEQQAREGPQAAGSKPRKFPEKKKKEAKGPTAIDLPAEEDFDALVSAAIKA
DNTCGLAKCPASVVTLGQLCQHCGRRYCLSHHLPEVHGCGERARAHARQRISREGVLYAG
SGAKDRSLDPAKRAQLQRRLDKKLEELTGQRKGRKKEKGQ
NT seq
3183 nt
NT seq
+upstream
nt +downstream
nt
atgtcctcagaacgctgcggctgtaagcagacaccagccgtccgaaggtgccctgcagga
cggaggccgccacggccgccgccatctttctgcagcctcggccgagagcggaagcggaag
cggctcgaacctggtgcgtcgacgcaccgggcccgaccggaagcaccgccccgcgcaaca
gctgtacctcgtcggcttcggcccgggccgggcggcgccatggcctcggcggcggtggag
agcttcgtgatcaagcagttggacctgctggagctcgagaggagcgcggaggtcgaggag
cgcaggtcctggcaggaaaacgtctctctgaaagaactccagagccgaggcgtctgtttg
ctgaagctgcaggtctccagccagcggaccgggctctacgggcggctgctggtcaccttc
gagcccaggaggtgcgcgtcggcagctgtgcttcccagtaacagctttacgtcaggcgac
atcgtgggcctgtatgacgaggacagtcagctggccacgggggtcctgacccgcatcacc
cagaagctggtcacggtggccttggacgcgtcccatgatttccagttgagtttggaccga
gagcgttcctaccgactcttaaaacttgccaatgatgtcacttataagcgactgaaaaag
gcgctgaccaccctgcagaagtatcactccggccccgcgagcgcgctcatcgaggtcctc
ttcggtgcgtcggcccccagtcctgccagtgacatccccccgctgaccttctacaacacc
gccctggacgcctcccagaaggaagcggtcctgttcgcgctgtcccagaaggaactcgcc
atcatccacgggcctcctggcactgggaaaaccaccaccgtggtcgaaatcattctgcaa
gctgtgaaacagggctccaaggtcctgtgctgcgcaccctccaacgtcgccgtggacaac
ctggtggagcgtctggcccggtggaagcagaggatcgtgcgcctggggcacccagcccgg
ctcctggagtccatccagcagcactccctggacgcggtcctggcgcggagtgacggcgcc
caggtcgtggcggacatcaggagggacatcgaccaggtcctcgggaaaaccaaaaagacc
caggataagagagagaagagtcattttcgagatgaaatcaagctgctaaggaaggagctg
aaggagagggaggaagcggccatgctcgagagcctcacggcggcccgcgtggtcctcgcc
acaaacgcaggtgcttcttcggacgggcccctgaagttgctgcccgacggctacttcgac
gtggtggtcattgacgagtgcgcccaggccctggaagccagctgctgggtcccgctgctg
aaggccaggaagtgcatcctggccggggaccacaaacagctgccccccaccatcatctcg
cacaagggcggcgctgcggggctggccctcagcctgatggagcgcctggttgaggagcgc
ggcgcgggggtgctgcgcatgctgaccgtgcagtaccgcatgcatncggccatcgcgcag
tgggcctcggaggccctgtaccacgggcggctcacggcccacgcttccgtggccgggcac
ctcctgcgggatctcccaggagtggctgccaccgaggagacaggcatccccctgctgctg
gtggacacggccggctgcgggctctttgaactggaagaggaggacgagcagtccaaaggg
aaccctggtgaagtgcgcctcgtccgtctgcacgtgcaggccctggtggacgcgggggtc
ccagccggcgacgttgccgtcatcacaccgtacaacctgcaggtggacctgctcagacag
agcctggcgcagaggcaccccgagcttgagattaagtcggtggacggcttccagggccga
gagaaggaggccgtgatcctgtccttcgtccgatccaaccggaaaggcgaggtgggcttc
ctcgccgaggaccggcgcattaatgtcgccgtcacccgcngccggcgccacgtggccgtg
gtctgtgattcccgcaccgtcagcaaccacaccttcctgaagaccctggtggcctacttc
gccgagcacggggaggtgcgcacggcctttgagtatctcgacgacctcgtccccgaaaac
tactcccacgagggctcccagggccacagccgggccggtgccaaagcccagggctctgcc
ccgccagccaggagagctcccgggagcaggcagcccgcaggggccaggccaggctgcaag
aagccgggcgggacgccctccgactctgaggccccgcctcagcccagcctcagcggaggc
ggcccgcagggagctgggagccgagacggcgcagatcacttgagggccacgatagtggag
tttgtgtccagcgagaaaacgcagttggcgtttcccgcctccctgaactcgcatgacagg
ctgcgggtccatcagatggcagaggagctcgggctgaggcacgacagtgctggggagggc
agggagcgcttcatcaccgtgagcaagagggccccgccagcccccgcggccnccgccacc
ccggcggaggccggcagcaaagcccctctctgtccagagccccccagccccgcacacaca
gaggcccccgtcggggcgcagagcagccagaaccagctggacctgaaggcgctgcacctc
gagagactgcagagggcgaggagccggcaggagcagcaggccagggaggggccacaggct
gcgggctccaagccacgcaagttcccagaaaagaagaagaaagaagcgaaaggacccacg
gccatagacctgccggctgaggaggactttgacgccctggtctcagccgccatcaaggct
gataacacctgtggcctcgcgaagtgcccagccagcgtggtgaccctgggccagctctgc
cagcactgcggccgccgctactgcctcagccaccacctgcccgaggtccacggctgcggg
gagagggctcgcgcccacgcgcggcagagaatcagccgggaaggagtcctctatgctggc
agcggggccaaggacaggtccctggacccagccaagagggcgcagctgcagaggaggctg
gacaagaagctggaggagctgaccggccagaggaagggcaggaagaaggagaaggggcag
tga
DBGET
integrated database retrieval system
