Sus scrofa (pig): 100520434 Help Entry 100520434         CDS       T01009                                  Symbol LIG1 Name (RefSeq) DNA ligase 1   KO K10747   DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] Organism ssc  Sus scrofa (pig) Pathway ssc03030   DNA replication ssc03410   Base excision repair ssc03420   Nucleotide excision repair ssc03430   Mismatch repair Brite KEGG Orthology (KO) [BR:ssc00001]  09120 Genetic Information Processing   09124 Replication and repair    03030 DNA replication     100520434 (LIG1)    03410 Base excision repair     100520434 (LIG1)    03420 Nucleotide excision repair     100520434 (LIG1)    03430 Mismatch repair     100520434 (LIG1)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03032 DNA replication proteins [BR:ssc03032]     100520434 (LIG1)    03400 DNA repair and recombination proteins [BR:ssc03400]     100520434 (LIG1) Enzymes [BR:ssc01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.1  DNA ligase (ATP)      100520434 (LIG1)     6.5.1.6  DNA ligase (ATP or NAD+)      100520434 (LIG1)     6.5.1.7  DNA ligase (ATP, ADP or GTP)      100520434 (LIG1) DNA replication proteins [BR:ssc03032]  Eukaryotic type   DNA Replication Elongation Factors    Other elongation factors     100520434 (LIG1)  Prokaryotic type    Elongation factors (archaeal)     Other elongation factors      100520434 (LIG1) DNA repair and recombination proteins [BR:ssc03400]  Eukaryotic type   SSBR (single strand breaks repair)    BER (base exicision repair)     Long Patch-BER factors      100520434 (LIG1)    NER (nucleotide excision repair)     Other NER factors      100520434 (LIG1)    MMR (mismatch excision repair)     Other MMR factors      100520434 (LIG1) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase PucR Motif Other DBs NCBI-GeneID:  100520434 NCBI-ProteinID:  XP_020950308 Ensembl:  ENSSSCG00000003128 LinkDB All DBs Position 6:complement(53620483..53660020) Genome browser AA seq 923 aa AA seqDB search MQRSIMSFFQPKEEGKAKKPEKETSNSTREIESPPKVALKERNRVVPEGDSPVRRPGRKV ARVLGSEGEDEEDASTPPKRQKLAPDSPQVSHPGPVSFPESSPSLSSSSPEVISPSGIPK RRTARKQLSKRTFQDVLEEQSEDKDREAKRPKTEEEAETPTESLTEPEVSKKQEAEEGDQ PTTPPEPPKTATESPAVAVAVAASISGPEVAAKQAVQEDGQAKPPPRTLKTLSSFFSPRK PAAKKEVNEEGPSALRKDEATGHPDPPSYNPAKNNYHPVQDACWQAGQRVPYLAVARTFE KIEEVSARLRMVETLSNLLRSVVALSPADLLPVLYLSLNRLGPPQQGLELGIGDGILLKA VAQATGRQLESVRAEVAEKGDVGLVAESSRSTQRLVLPPPALTAAGVFTKFRDIAQLAGS ASTAKKMEIIKGLFVACRHSEARFIARALSGRLRLGLAEQSVLAALAQAASLTPPGQGEI PPAMVDAGKGKTAEARKTWLEEQGMILKQTFCEVPDLDRIVPVLLEHGLERLPEHCRLSP GVPLKPMLAHPTRGVSEVLKRFEEAAFTCEYKYDGQRAQIHVLEGGEVKIFSRNQEDNTG RYPDIISRIPKIKLPSVTSFILDAEAVAWDREKKQIQPFQVLTTRKRKEVDAAEIQVQVC LYAFDLIYLNGESLVREPLSRRRQLLRENFVETEGEFVFATSLDTKDTDQIAEFLEQSVK DSCEGLMVKTLDVDATYEIAKRSHNWLKLKKDYLDGVSDTLDLVVIGAYLGRGKRAGRYG GFLLASYDEESEELQAICKLGTGFSDEELEAHHQSLQALVLPAPRSYVRADGAVAPDHWL DPSAVWEVKCADLSLSPIYPAARGLVDSEKGISLRFPRFIRVRDDKKPEEATTSAQVACL YRKQSQIQNQQGTGPDSDQEDFY NT seq 2772 nt NT seq  +upstreamnt  +downstreamnt atgcagcgaagtatcatgtcatttttccagcccaaggaagagggcaaagcaaagaagcca gagaaggagacatccaacagtaccagagaaatagagtcccctccaaaggtggcactgaag gagcggaatagagtggtgcccgagggcgactctccagtaaggaggcctgggaggaaggtg gcccgggtgctgggcagcgaaggggaggatgaggaggacgcctccacgccccccaaacgc cagaaacttgctccagactctccacaagtctcccatcccggtcctgtctcttttcctgag agcagcccttccctctccagctcctctccggaggtcatctccccatcagggatcccgaag cgtcgcacagcccggaagcagctgtccaaacggacatttcaggatgtcctggaagagcag agcgaggacaaggacagagaagctaagaggccgaagacggaagaagaagccgagacacca acagaaagcctcacagagcctgaagtgagcaaaaagcaggaagcagaagaaggggaccag cccacaacgccccctgagcccccaaagactgccacagagtccccggcggtagcggtggcg gtggcagcaagcatctcggggcccgaggtggcggcgaagcaggcagtgcaggaggatggc caggcgaagcctccccccagaactctcaagacgctcagcagtttcttctccccccggaag ccggcagctaaaaaagaagtgaacgaagagggacccagcgccctacgaaaggacgaggcc acgggacacccggaccctcccagctacaatcctgccaagaacaactaccatcccgtccag gatgcctgctggcaggcgggccagagggtcccctacctggccgtggcccggacctttgag aagattgaggaggtttctgcacggctccgcatggtcgagacgctgagcaacctgctgcgc tccgtggtggccctgtcacctgcggacctcctccccgtcctctacctcagcctcaaccgc ctggggccgccccagcagggcctggagctcggcatcggcgacggcatccttctcaaggca gtggcccaggccacaggtcggcagctcgagtcagtccgggctgaggtggccgagaagggc gacgtggggctggtggccgagagcagccgaagcacccaaaggctcgtgctgcccccgccc gccctcaccgctgccggcgtcttcaccaagttccgggatatcgcgcagctggcgggcagc gcgtccacagccaagaagatggaaatcatcaaaggcctctttgtggcctgtcgccactca gaagcgcgattcatcgccagagccctgagtggacggctgcgcctcgggctggctgagcag tcggtgctggcggccctcgcccaggccgcgagcctcacgcccccaggccaaggtgaaatt ccccccgccatggtggatgctgggaagggcaagacagcagaagccaggaagacgtggctg gaggagcagggcatgatcctgaaacagacgttctgcgaggtgcccgacctggaccggatc gtccctgtgctgctggagcacggcctggaacgtctaccggagcactgcaggctgagccca ggggtccccctgaaaccaatgctggcgcaccccacgcggggcgtcagcgaggtcctgaaa cgctttgaggaggcagctttcacctgcgagtacaaatacgatgggcagagagcacagatc cacgttctggaaggcggcgaggtgaagatcttcagcaggaaccaggaagacaacaccgga aggtaccccgacatcatcagccgcatccccaagattaaactcccatccgtcacatccttc attctggatgcggaagccgtggcttgggaccgggaaaagaagcagatccagccattccaa gtgctcaccacccgcaaacgcaaggaggtggacgcggcagagatccaggtgcaggtgtgt ctctacgccttcgacctcatctacctcaacggagagtccctggttcgggagcccctttcc cgacggcggcagctgctccgggagaacttcgtggagacggagggcgagtttgtcttcgcc acctccctggacaccaaggacacggaccagatcgccgagttcctggagcagtcagtgaaa gactcctgcgagggcctgatggtgaagaccctggatgtcgatgccacctacgagatcgcc aagaggtcgcacaactggctcaagctgaagaaggactaccttgatggcgtgagcgacacc ctggacctggtggtgatcggcgcctacctaggccggggaaagagggccggtcggtacggg ggcttcctgctggcctcctatgatgaggagagtgaggagctgcaggccatatgcaagctc ggaactggcttcagcgacgaggagctggaggcgcatcaccagagcctccaggccctggtg ctgcccgccccccgctcctacgttcgcgccgacggggctgtggcccccgaccactggctg gaccccagcgccgtgtgggaggtgaagtgcgccgacctctccctctcccccatctacccc gccgcccggggcctggtggacagcgagaagggcatctcccttcgcttccctcggtttatt cgagtccgtgacgacaagaagccggaagaggccaccaccagcgctcaggtggcctgtctg taccggaaacaaagtcagattcagaaccagcaaggcacagggcccgactccgaccaggaa gatttctactag

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