Sus scrofa (pig): 100520485
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Entry
100520485 CDS
T01009
Symbol
OTX1
Name
(RefSeq) homeobox protein OTX1
KO
K09326
homeobox protein OTX1
Organism
ssc
Sus scrofa (pig)
Pathway
ssc04550
Signaling pathways regulating pluripotency of stem cells
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04550 Signaling pathways regulating pluripotency of stem cells
100520485 (OTX1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ssc03000
]
100520485 (OTX1)
Transcription factors [BR:
ssc03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain Paired-related
100520485 (OTX1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TF_Otx
Homeodomain
Homeobox_KN
SatD
Motif
Other DBs
NCBI-GeneID:
100520485
NCBI-ProteinID:
XP_003125144
Ensembl:
ENSSSCG00000008371
UniProt:
A0A287ARL1
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All DBs
Position
3:complement(78895142..78903045)
Genome browser
AA seq
356 aa
AA seq
DB search
MMSYLKQPPYGMNGLGLAGPAMDLLHPSVGYPATPRKQRRERTTFTRSQLDVLEALFAKT
RYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQSGSGTKSRPAKKKSSPVRESSG
SESSGQFTPPAVSSSASSSSSASSASANPAAAAAAGLGGNPAVAVPSSLSTPAASSIWSP
ASISPGSAPASVSVPEPLAAPSNASCMQRSVAAGAASAAASYPMSYGQGGSYGQGYPAPS
SSYFGGVDCSSYLAPMHSHHHPHQLSPMAPSSMASHHHHHPHAHHPLSQSSGHHHHHHHH
HHHQGYGGSGLAFNSADCLDYKEPGAAAASSAWKLNFNSPDCLDYKDQASWRFQVL
NT seq
1071 nt
NT seq
+upstream
nt +downstream
nt
atgatgtcttacctcaaacaacccccatacggaatgaatgggctgggactggctggtcca
gccatggacctcctgcacccctctgtgggctatcccgccaccccgaggaagcagcggcgg
gagcgcactaccttcacgcgctctcagctggacgtgctcgaggcgctctttgccaagact
cgctaccctgatatcttcatgcgcgaggaggtggcgctcaagatcaatctgccagagtcc
agggtccaggtctggttcaagaaccgccgcgccaagtgtcgccagcagcagcagagcggg
agcgggaccaagagccgcccagccaagaagaagtcgtctccggtgcgggagagctcgggc
tctgagagcagcggccagttcacaccgcccgctgtgtccagctccgcctcgtcctctagc
tccgcatcaagcgcctccgccaacccagcggctgcagcggctgcaggcctgggcgggaac
ccggcggtggcagttccgtcgtcgttgagtacgccggctgcctcctccatctggagtccg
gcctccatctcgccgggctcagcgcctgcgtccgtatcggtgcccgagcctttggccgcc
ccaagcaacgcatcgtgtatgcagcgctcggtcgctgcaggcgctgcctcggccgcagcc
tcctatcctatgtcctatggccagggcggcagctatggccagggctaccccgcgccctcc
tcttcttactttggcggcgtggactgcagctcatacctagcgcccatgcattcgcaccac
cacccgcaccagctcagccctatggcaccctcctccatggcgagccaccatcaccatcat
ccccacgcgcaccacccgctgagccagtcctcaggccaccaccatcaccaccaccaccac
caccaccaccagggctacggcggctcgggtctcgccttcaactctgccgactgcttggat
tacaaggagcctggtgccgctgccgcatcttccgcttggaaactcaacttcaactcacct
gactgtctggactataaggaccaagcctcatggaggtttcaggtcttgtga
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integrated database retrieval system
