Sus scrofa (pig): 100520915
Help
Entry
100520915 CDS
T01009
Symbol
COL11A2
Name
(RefSeq) collagen alpha-2(XI) chain isoform X2
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
ssc
Sus scrofa (pig)
Pathway
ssc04820
Cytoskeleton in muscle cells
ssc04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
100520915 (COL11A2)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
100520915 (COL11A2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ssc00536
]
100520915 (COL11A2)
Glycosaminoglycan binding proteins [BR:
ssc00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
100520915 (COL11A2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_3
Laminin_G_1
Motif
Other DBs
NCBI-GeneID:
100520915
NCBI-ProteinID:
XP_003128379
Ensembl:
ENSSSCG00000001473
Vega:
OTTSUSG00000001391
UniProt:
K7GME7
LinkDB
All DBs
Position
7:complement(25204496..25234880)
Genome browser
AA seq
1737 aa
AA seq
DB search
MERCSRCHRLLLLVPLVLGLSAAPAWAGASPVDVLRALRFPSLPDGVRRTRGICPADVAY
RVSRPAQLSAPTRQLFPGGFPKDFSLLTAVRTRPGLQAPLLTLYSAQGVRQLGLELGRPI
RFLYEDQTGRPQPPAQPVFRGLSLADGKWHRVAVAVKGQSVTLILDCKKRVTRPLPRSAH
PVLDTHGVIIFGARILDEEVFEGDVQELVIIPGVQAAYESCEQKELDCEGGWRETPLKQQ
SHRTQRSPKQQPPRLHRPQNQEPQRQSTESLYYDYEPPYYDVMTTGTTPDYQDPTPGGEE
GILESSPLPPPEEEQTDLQVPSTADRFLTEEYGEGGTEPPTGPYDYTYGYGDDYREETEL
GPALSAETAHSGAAARGPRGLKGEKGEPAVLEPGMLVEGPPGPEGPAGLTGPRGIQGNPG
PVGDPGERGPPGRAGLPGSDGAPGPPGTSLMLPFRFGSGAGDKGPVVAAQEAQAQAILQQ
ARLALRGPPGPMGYTGRPGPLGQPGSPGLKGESGDLGPQGPRGPQGLTGPPGKAGRRGRA
GADGARGMPGEPGVKGDRGFDGLPGLPGEKGHRGDTGAQGLPGPPGEDGERGDDGEIGPR
GLPGESGPRGLLGPKGPPGIPGPPGVRGMDGPHGPKGSLGPQGEPGPPGQQGTPGTQGLP
GPQGAVGPHGEKGPQGKPGLPGMPGSDGPPGHPGKEGPPGTKGNQGPSGPQGPLGYPGPR
GVKGVDGIRGLKGHKGEKGEDGFPGFKGDMGVKGDRGEVGVPGSRGEDGPEGPKGRTGPT
GDPGPPGLMGEKGKLGVPGLPGYPGRQGPKGSLGFPGFPGASGEKGARGLSGKPGPRGER
GPTGPRGQRGPRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPNGFPGPKGPPGPPGKD
GLPGHPGQRGEVGFQGKTGPPGPPGVVGPQGAAGETGPMGERGHPGPPGPPGEQGLTGTA
GKEGTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPAGPPGPAGSPGER
GAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEKGPIGPTGRDGVQGPVGLPGPAGPPGVA
GEDGDKGEVGDPGQKGAKGNKGEHGPPGPPGPLGPVGQPGAAGADGEPGARGPQGHFGAK
GDEGTRGFNGPPGPIGLQGLPGPSGEKGETGDVGPMGPPGPPGPRGPAGPNGADGPQGPS
GGVGNLGPPGEKGEPGESGSPGVQGEPGVKGPRGERGEKGESGQPGEVGPPGPKGPTGDD
GPKGNPGPVGFPGDPGPPGEAGPRGQDGAKGDRGEDGEPGQPGSPGPTGENGPPGPLGKR
GPAGTPGPEGRQGEKGAKGDPGAVGAPGKTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRP
GATGQAGPPGPVGPPGLPGLRGDTGAKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGST
GQKGETGIPGASGPIGPGGPPGLPGPAGPKGAKGATGPAGPKGEKGVQGPPGHPGPPGEV
IQPLPIQMPKKTRRSVDGSRLMQEDEAMPTGGAPGSPGGLEEIFGSLDSLREEIEQMRRP
TGTQDSPARTCQDLKLCHPELPDGEYWVDPNQGCARDAFRVFCNFTAGGETCVTPRDDVT
QFSYVDSEGSPVGVVQLTFLRLLSVSAHQDVSYPCSSGEDQDGPLKLRGANEDELSPETS
PYVKEFRDGCQTQQGRTVLEVRTPVLEQLPVLDASFSDLGAPPRRGGVLLGPVCFMG
NT seq
5214 nt
NT seq
+upstream
nt +downstream
nt
atggagcggtgcagccgctgccatcgcctcctcctgcttgtaccgctggtgcttgggctg
agcgcggccccggcctgggcaggtgcatcgcccgtggatgtgcttcgggccctgaggttc
ccctccctccctgatggcgtccggaggacgaggggcatctgtcctgctgatgtggcctac
cgagtgtctcgccctgcccagctcagtgcacccacccgccagctcttcccaggaggcttt
cccaaagatttctctctattgactgctgtccggacccgccctggcctccaggctccgctc
ctgactctctatagtgcccagggtgtccgacagctgggcctggagctcggccgacccatc
cgtttcctgtatgaggaccagacaggacggcctcagcccccagctcagcccgtcttccga
ggcctcagcctagcagatggcaagtggcaccgtgtagctgtggctgtgaagggccagtct
gtcactctcatccttgactgcaagaagcgtgtcacccggcccctcccccgaagtgctcat
ccagtgttggacacccatggagtgatcatctttggtgctcgtatcctggatgaagaagtc
tttgagggtgatgtccaggagcttgtcatcattccgggggtgcaagctgcctacgaatcc
tgtgaacagaaggagctggattgtgaggggggttggagggagacacctctgaaacaacag
tctcacagaacccagagatctccgaagcagcaaccaccgagactacacaggccgcaaaac
caggagccccagcgacagtccactgagtctctctactatgactacgagcccccctattac
gatgtgatgactacggggacgacccctgattatcaggaccccaccccaggtggagaggaa
ggaattctggagtcaagccccttgccaccccctgaggaggagcagacagatctccaggtc
ccctccacagccgacaggttcctgacagaggaatatggggagggtggcacagagccccca
acagggccctacgattacacctatggctatggggacgattatcgtgaggagacggaactt
ggccctgccctctctgcggagacagcccactcaggagccgctgcccgtggaccccggggg
ctgaagggagagaagggggagcctgcggtgctggaacctggcatgctggtggagggaccc
cctggtccagaaggccccgcgggattgactggtccccgtggtatccaaggcaaccccggc
cccgttggagacccgggcgagaggggcccccctggccgagcagggctccccggatcagat
ggggcccctggcccccctggcacatctctcatgctcccattccggtttggcagtggagcg
ggtgacaagggcccggtggtggcggcccaggaggctcaggcccaggcaattctgcagcag
gcacggctggcgctccgcggaccccctggccccatgggatacacgggccgccccggaccc
ttgggtcagcctgggagccctggcctgaaaggagaatctggagacctaggacctcagggc
cccagaggacctcagggcctgacgggccctccgggcaaggctgggcgaaggggccgggcg
ggtgctgatggagcccgagggatgcccggggaacctggagtgaagggtgaccgtggtttt
gatggactcccagggctacctggggagaagggacacaggggtgataccggtgcccagggc
cttcctgggccccctggtgaggatggagagaggggagatgatggcgagattgggcctcgg
gggctgcctggagagtccggacctcgaggtctccttggccccaaaggcccacctgggatt
cctggacccccaggagtccgaggcatggatggtccccacggccccaaaggaagcttgggc
ccccagggagagccaggacctcctggacaacagggcactcctgggacccagggtctccct
gggccccaaggtgccgttggccctcatggagagaagggccctcaagggaaaccaggcctc
cccggcatgcccggctcagacggacctccgggtcaccctggcaaagaaggtccccctgga
accaaaggaaaccagggtccatctggtcctcagggtcctctgggatacccaggacctcga
ggtgtcaagggtgtggacgggattcgaggtctgaaaggtcacaagggtgaaaagggcgag
gatggctttcctgggttcaaaggtgacatgggtgtgaaaggtgacaggggcgaggttgga
gtcccaggttccaggggagaggatggtcctgaggggccaaagggacgcactggacccacc
ggagaccctgggccccccgggctcatgggcgagaagggcaagctgggtgttcccggtctg
cctggctaccccggacgccagggtcccaaggggtctctgggatttcctggtttccctgga
gccagtggtgagaagggagcccggggcctctcggggaaacccgggcctcggggagaacgt
ggccccacgggtccacggggtcagcggggaccccgaggcgccactgggaagtctggagcc
aagggaacatctggtggtgatggtccccacgggccccccggagagaggggtctccctgga
cctcagggccccaacggatttcctggccccaaaggacctccgggcccccctgggaaggac
gggctgccgggacacccgggccagagaggagaagtgggtttccaaggaaagactggcccc
ccgggccccccgggagtggtgggaccccagggagccgcaggagaaaccgggcccatgggt
gagcgaggtcacccaggccccccgggccctcctggagagcaaggactgactggaacagct
ggaaaagaaggaacgaagggggaccccggtccccctggagccccaggaaaggatggtcct
gctggtctgaggggcttcccaggagagaggggccttcctggcactgcgggtggacctggt
ttgaagggaaatgaaggtccagctggtccccccggccctgcgggctctcctggggagcga
ggtgcagcaggatctgggggacccattggccccccagggcgcccgggaccacagggccct
cctggagcagcaggagagaaaggcgtcccgggggagaaaggccccatcggtcctactggc
cgcgatggggtgcagggtccagtggggcttcctggtcctgctggacccccaggcgtggca
ggagaggatggagacaagggtgaggtgggcgaccctggacagaagggcgctaaagggaac
aagggcgagcatggccctcctggaccccctggaccccttggtcctgtggggcagcctgga
gcagcgggggcagatggggagcccggtgctcggggtccccaggggcactttggtgccaaa
ggtgacgaaggaacaagaggattcaatgggcctccaggacccattggtctgcagggtttg
ccaggcccctcaggggagaagggagagacaggagacgtgggccctatgggaccaccgggc
cccccaggacctcgaggcccagctggacccaacggagctgatggtcctcaaggcccctca
ggaggtgttgggaacctgggtccccctggagagaagggggagccaggagagtcgggatct
ccgggagtccagggcgagcccggtgtcaagggtccccgcggcgagcgtggggagaaagga
gagtcggggcagcctggagaggtgggaccaccagggcctaaaggccccacgggagacgat
ggtcccaaaggaaaccccggtcctgttggttttcctggtgaccctgggcctcctggagaa
gctggcccccggggccaggatggcgctaagggggaccgtggagaggacggagagccagga
cagcctggatcccctggtcccactggggagaacggacctcctggaccacttggaaagcgg
ggtcctgccggtacccctggccctgaggggcgacaaggagagaaaggcgccaagggggat
cccggtgctgtgggcgccccgggaaagacaggccccgtgggtcctgcaggcccggcagga
aaacctggtcctgatggtctgcgggggctcccgggctcagtgggtcagcaaggccgtcct
ggggccacgggccaggccgggcctccaggtcctgtgggacccccagggcttcctggtctc
cggggcgatactggggccaagggagagaagggtcacccaggtctcatcgggctgatcggc
ccccctggggagcagggagagaagggcgatcgaggacttcctgggcctcagggatccact
ggacagaagggagagacaggcatcccaggagcatctggccctattggtcctggagggccc
cccggcctccctggacctgctggccccaaaggagccaaaggagccacgggcccggccgga
cccaagggagagaagggcgtccagggccctccaggccacccaggccccccaggcgaggtg
atccagcccctgcccatccagatgcccaagaagacgcggcgctcagtggacggcagccgt
ctgatgcaggaagatgaggccatgccgactgggggtgccccgggcagtcccggggggctg
gaggagatctttggctcactggactcccttcgggaggagattgagcagatgaggcggccc
acggggacccaggacagcccagctcgcacctgccaggacctgaagctctgccatccagag
ctccctgacggagagtactgggtggaccccaaccagggctgtgcccgcgatgccttccgg
gttttctgcaactttactgcaggaggggaaacctgtgtgacgcccagggatgacgtcacg
cagttctcctacgtggactccgaaggctccccggtgggtgtggtccagctcaccttcctg
cggctgctcagcgtctctgcccaccaggatgtgtcctacccgtgctcctccggggaggat
caggatggccccctgaagctccggggggccaacgaggatgagctgagtccagagaccagc
ccctatgtcaaggaattcagggacggctgtcagacacagcaaggccggacggtgctagaa
gttcgaacacctgtgctggagcagctgccagtgctggacgcctccttctcagacctgggg
gcacccccgaggcggggaggggtgctgctggggcctgtctgcttcatgggctag
DBGET
integrated database retrieval system
