Sus scrofa (pig): 100520963
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Entry
100520963 CDS
T01009
Symbol
CNOT3
Name
(RefSeq) CCR4-NOT transcription complex subunit 3 isoform X3
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
ssc
Sus scrofa (pig)
Pathway
ssc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100520963 (CNOT3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssc03019
]
100520963 (CNOT3)
Messenger RNA biogenesis [BR:
ssc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
100520963 (CNOT3)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
100520963 (CNOT3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
Cluap1
DUF4407
PI3K_P85_iSH2
Motif
Other DBs
NCBI-GeneID:
100520963
NCBI-ProteinID:
XP_005664879
Ensembl:
ENSSSCG00000003264
LinkDB
All DBs
Position
6:complement(55975628..55993140)
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AA seq
755 aa
AA seq
DB search
MADKRKLQGEIDRCLKKVSEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRD
QIKTWVASNEIKDKRQLIDNRKLIETQMERFKVVERETKTKAYSKEGLGLAQKVDPAQKE
KEEVGQWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKDQKQDRIEGLKRHIEKHRYH
VRMLETILRMLDNDSILVDAIRKIKDDVEYYVDSSQDPDFEENEFLYDDLDLEDIPQALV
ATSPPSHSHMEDEIFNQSSSTPTSTTSSSPIPPSPANCTTENSEDDKKRGRSTDSEVSQS
PAKNGSKPVHSNQHPQSPAVPPSYPSGPPPTASALSTTPGNNGAPAPAAPASALGPKASP
APSHNSGTPAPYAQAVAPPAPSGPSTAQPRPPSVQPGGGGGGGSGGGGGGGSSNNSSGGG
GAGKQNGATSYSSVVADSPAEVALSSSGGNTTSSQALGPPSGPHNPPPSTSKEPSAAAPT
GAGGVAPGSGNNSGGPSLLVPLPVNPPSSPTPSFSEAKAASTLLNGPPQFSAAPEIKAPE
PLSSLKSMAERAAISSGIEDPVPTLHLTERDIILSSTSAPPASAQPPLQLSEVNIPLSLG
VCPLGPVPLTKEQLYQQAMEEAAWHHMPHPSDSERIRQYLPRNPCPTPPYHHQMPPPHSD
TVEFYQRLSTETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDE
FEQGTYIYFDYEKWGQRKKEGFTFEYRYLEDRDLQ
NT seq
2268 nt
NT seq
+upstream
nt +downstream
nt
atggcggacaagcgcaaactccaaggtgagattgatcgctgcctcaagaaggtgtccgag
ggcgtggagcagtttgaagatatttggcagaagctccacaatgcagccaacgcaaaccag
aaagagaagtatgaggctgacctaaagaaggagattaagaagcttcaacggctgagggac
cagatcaagacatgggtggcgtccaacgagatcaaggacaagaggcagctgatagacaac
cgcaagctcattgagacgcaaatggaacggttcaaagttgtggagcgagagaccaagacc
aaagcctatagcaaggagggcctgggcctggcacagaaggtggaccctgcccagaaggag
aaggaggaggttggccagtggctcacaaataccatcgacaccctgaacatgcaggtggac
cagtttgaaagtgaggtggagtcgctgtcggtgcagacacgcaagaagaagggcgacaag
gatcagaagcaggaccggatcgagggcctgaagcggcacatcgagaagcaccgctaccat
gtgcgcatgctggagaccatcctgcgcatgctggacaacgactccatcctggtggacgcc
atccgcaagatcaaggacgacgtggagtactacgtcgactcgtcccaggatcccgacttc
gaggagaacgagttcctctacgacgacctggacctcgaggacattccacaggcgctggtc
gccacctccccacccagccacagtcacatggaggatgagatcttcaaccagtcaagcagc
acgcccacctccaccacctccagctcgcccatcccacccagcccggccaactgcaccacg
gaaaactctgaagatgacaagaagaggggacgctcgacggatagtgaagtcagccagtct
ccagccaaaaacggctccaagcctgtccacagcaaccagcaccctcagtccccagccgtg
ccgccaagctacccctccggccccccgcctaccgcctctgccctgagcaccacccctggc
aacaatggggcccctgccccagcagcacccgcaagtgccctgggccccaaggccagccca
gctcccagccacaactcgggcacccctgccccctatgcccaggctgtggccccgccagcc
cctagtgggcccagcaccgcccagccacgaccccccagcgtccagcctggtgggggaggt
ggaggtggcagtggaggtggcggaggcggcggcagtagtaataacagcagtggaggtgga
ggtgctggcaagcagaatggtgccaccagttacagctcagtggtggcagacagtccagca
gaggtggctctcagcagcagtgggggcaacaccaccagtagccaggctctgggccccccc
tctggcccccacaacccacctcccagcacctcgaaggagcccagtgcagcagctccaaca
ggcgctgggggcgtggccccaggctcagggaacaactccgggggtcccagcctcctggtg
ccactacctgtgaacccccccagctccccgacgcccagcttcagcgaggccaaggcagcc
agcaccctgctcaatggacctccgcagttcagcgccgccccggagatcaaggctcctgag
cctctgagctccctgaagtccatggccgagcgggcagccatcagctccggcatcgaggac
cctgtgcccacactgcacctgacggagcgagacatcatcctgagcagcacgtcagctccc
ccagcctcagcccagcctcccctgcagctctctgaggtgaacataccgctgtcgctgggc
gtgtgtccactggggcctgtgcccctcaccaaggagcagctctaccagcaggccatggaa
gaggctgcctggcaccacatgccccacccctcagactctgagcgtatccggcagtacctc
ccccggaacccctgcccaacacccccctaccaccaccagatgccacccccacactcggac
actgtggagttctaccagcgcctgtcgaccgagacgctcttcttcatcttctactatctg
gagggcacgaaggcgcagtacctggcagccaaggccctgaagaagcagtcatggcgattc
cacaccaagtacatgatgtggttccagaggcacgaggagcccaagaccatcactgacgag
tttgagcagggcacctacatctactttgactacgagaagtggggccagcggaagaaggaa
ggcttcacctttgagtaccgctacctggaggaccgggacctccagtga
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