Sus scrofa (pig): 100521132
Help
Entry
100521132 CDS
T01009
Symbol
EDC4
Name
(RefSeq) enhancer of mRNA-decapping protein 4
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
ssc
Sus scrofa (pig)
Pathway
ssc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100521132 (EDC4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssc03019
]
100521132 (EDC4)
Messenger RNA biogenesis [BR:
ssc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
100521132 (EDC4)
mRNA degradation factors
5'-3' decay
Decapping complex
100521132 (EDC4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_WDHD1_1st
Beta-prop_EDC4L
DUF445
Beta-prop_TEP1_2nd
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_HPS5
WDR55
Motif
Other DBs
NCBI-GeneID:
100521132
NCBI-ProteinID:
XP_003126974
Ensembl:
ENSSSCG00000002771
ENSSSCG00000024698
UniProt:
F1S2J4
LinkDB
All DBs
Position
6:28489427..28501511
Genome browser
AA seq
1402 aa
AA seq
DB search
MASSCASIDIEDATQHLRDILKLDRPAGGPSAESQRPSNAYNGDLNGLLVPDPLCSGDGT
SANKPGLRAMPPINLQEKQVICLSGDDSSTCIGILAKEVEIVASSDSSISSKARGSNKVK
IQPVAKYDWEQKYYYGNLIAVSNSFLAYAIRAANNGSAMVRVISVSTSERTLLKGFTGSV
ADLAFAHVNSPQLACLDEAGNLFVWRLALVNGKIQEEILVHIRQPEGTPLNHFRRIIWCP
FIPEESEDCCEEGSPTVALLHEDRAEVWDLDMLRSNHNTWPVDVSQIKQGFIVVKGHSTC
LSEGALSPDGTVLATASHDGFVKFWQIYIEGQDEPRCLHEWKPHDGRPLSCLLFCDNHKK
QDPEVPFWRFLITGADQNRELKMWCTVSWTCLQTIRFSPDIFSSVSVPPSLKVCLDLSAE
YLILSDVQRKVLYVMELLQNQEEGCACFSSISEFLLTHPVLSFGIQVVSRCRLRHTEVLP
AEEETDSLGADGTHGAGAMESAAGVLIKLFCVHTKALQDVQIRFQPQLNPDVVAPLPTHP
AHEDFAFGESRSELGSEGLGSTTHGSQPDLRRIVELPAPANFLSLSNETKPKLMTPDAFM
TPSASLQQIAASPSSSSSSSSSSSSSSSSSLTAVSAMSSTSAVDPSLPRPPEELTLSPKL
QLDGGLTISSSSSLQASPRGLLPGLLPGPADKLTPKGPGQVLTAASALSLELQEMEPLGL
PQASPTRTRSPDVISSASTALSQDIPEIASEALSRGFGSSAPEGLEPDSMASAASALHLL
SPRPRPGPELGPQLSLDGGPGDGDRHSAPSLLEAALTQETTAPDSQVWPTAPDITRETCS
SLAESPRNGLQEKHKSLAFHRPPYHLLQQHDSQDASAEQSDHDDEVASLASAAGGFGTKV
PTPRLPAKDWKTKGSPRASPKLKRKGKKDDGDSSMGSRLTEHQVAETPEDWPALIWQQQR
ELAQLRHSQEELLQRLCTQLEGLQSTVMGHVERALESRHEQEQRRLERALAEGQQRGGQL
QEQLTQQLSQALSSAVAGRLERSIRDEIKKTVPPCVSRSLEPVAGQLSNSVATKLTAVEG
SMKESISKLLKSKNLTDAIARAAADTLQGPMQAAYREAFQSVVLPAFEKSCQAMFQQIND
SFRLGTQEYLQQLESHMKSRKAREQEAREPVLAQLRGLVSTLQGATEQMAATVSSSVRAE
VQHQLHVAVGSLQESILAQVQRIVKGEVSVALKEQQAAVTSSIMQAMRSAAGTPVPAAHL
DCQAQQAHILQLLQQGHLNQAFQQALTAADLNLVLYVCETVDPGQVFGQPPCPLSQPVLL
SLIQQLASDLGTRTDLKLSYLEEAVMHLDHSDPITRDHMGSVMAQVRQKLFQFLQAEPHN
SLGKAARRLSLMLHGLMTPSLP
NT seq
4209 nt
NT seq
+upstream
nt +downstream
nt
atggcctcctcctgcgcgagcatcgacatcgaggacgccacgcagcacctgcgggacatc
ctcaagctggaccggcccgcggggggccccagtgcagagagccagcgaccatctaatgcc
tacaatggagacctcaacgggctcctggtcccagaccccctctgctcaggtgatggtact
tcagcaaacaagcctggtctccgagccatgccacctattaatctgcaggaaaagcaggtc
atctgcctttcaggagacgacagttccacttgcattgggattttggccaaggaggtggag
attgtggccagcagcgactctagcatctcgagcaaggcacggggaagcaacaaggtaaaa
atccagcctgtcgccaagtatgactgggagcagaaatactactatggcaacctaattgct
gtgtctaactccttcttggcctatgccattcgtgctgccaacaatggctcagcaatggtg
cgggtgatcagtgtcagcacttcggaacggaccctgctcaaaggtttcacaggcagcgtg
gccgatctggcctttgcacacgtcaattccccacaactagcctgcctggatgaggcaggc
aacctgttcgtgtggcgcttggccctggttaatggcaaaattcaagaagagatcttggtt
catatccgacagccagagggtacgcctctaaaccacttccgcaggatcatctggtgcccc
ttcatccctgaagagagtgaggactgctgtgaagagggcagcccaactgtggccctgttg
catgaggaccgggctgaggtatgggacttggacatgctccgctccaaccacaacacctgg
cctgtggatgtcagccagatcaagcagggcttcatcgtggtaaaaggccacagcacatgc
ctaagtgaaggggccctttcacctgatgggactgtcctggctacggcaagccatgatggc
ttcgtcaagttttggcagatctacattgaggggcaggatgagccacggtgtctacatgaa
tggaagcctcatgatgggcggcccctctcctgcctcctgttttgtgacaaccataagaag
caggatcctgaggtccctttctggaggttcctcattactggtgctgaccagaatcgggag
ctgaagatgtggtgcacggtatcctggacctgcctgcagaccattcgcttctccccagat
atcttcagctcagtgagtgtgcccccaagcctcaaggtttgcctggacctctcagcagaa
tacctgattctcagtgatgtgcaacggaaggtcctctatgtgatggaactgctgcagaac
caggaggagggctgtgcctgcttcagctccatctctgagttcctgctcacccaccctgtg
ctgagctttggtatccaggtcgtgagtcgctgccggctgcggcacactgaggtgctgcct
gccgaggaggagaccgacagcctaggggctgatgggacccatggagccggggccatggag
tctgcagccggtgtgctcatcaagctcttttgtgtgcacactaaggcactgcaagatgtg
cagatccgcttccagccacagctgaacccagacgtagtggccccgctcccaacacaccct
gcccatgaggactttgcgtttggagagtctcggtctgaactggggtccgagggccttgga
tcaactactcacggctcacagcctgacctccgacgcatcgtagagctgccggcccctgcc
aacttccttagtttgagcaatgagaccaagcccaagctgatgacacctgacgccttcatg
acacctagcgcctccctgcagcagatcgctgcatctcccagcagcagcagcagcagcagc
agcagcagcagtagcagcagcagctcctctctcacagctgtgtctgccatgagcagtact
tcagccgtggacccttccttgcccaggccacctgaggagctgaccttgagccccaagcta
cagttggatggaggtctgacaataagcagcagcagcagcctgcaggcaagcccacggggc
ctcctgcctggcttgctcccaggtccggctgacaaattgactcccaaagggcctgggcag
gtgcttactgctgcctctgcactctccctggagctacaggaaatggagcccctggggcta
ccccaggcttccccaactcgcacccgctcccctgatgtcatctcctcagcttccactgcc
ctatcccaggatatccctgagattgcgtctgaagcactgtcccgtggctttggttcctct
gctcctgagggcctagagccagacagtatggcctcagctgcctcagcactgcacctcctg
tccccacggccccggccggggcccgagcttggtccccagcttagcctggatggaggccct
ggggatggggatcggcatagtgccccttcccttctggaggcagccttgacccaggaaacc
acagcccctgacagtcaggtctggcctacggccccagacattactcgtgagacctgcagc
agcctggcagagagccccaggaatggcctccaggaaaagcacaagagcctggccttccac
cgaccaccttatcacctgctgcagcaacatgacagccaggatgccagtgctgagcaaagt
gaccacgatgatgaggtggccagccttgcctctgctgcagggggctttggcaccaaagtt
cccactccacgtcttccagccaaggactggaagaccaagggatcccctcgggcctcacct
aagctcaaaaggaagggcaaaaaggatgatggggattcgtctatgggatcccggctcaca
gagcaccaggtggcagagacccctgaggactggccagctctcatttggcaacagcagaga
gagctggcacagctgcggcacagccaggaagagctgctgcagcgtctgtgcacccaactt
gaaggcctgcagagcaccgtcatgggccacgtggaacgtgccctagagtcacggcatgag
caggagcaacggcgactggagcgggcgctggccgaggggcagcaacggggtgggcagctg
caggagcagctgacgcaacagctgtcacaagcgctgtcttcagctgtggctgggcggctg
gagcgcagcatacgggatgagatcaagaagacggtgcctccttgtgtctcgaggagcctg
gagcccgttgcaggccaactgagcaactctgtggccaccaaactcacagccgtggagggc
agcatgaaagagagtatctccaagctgctcaagtccaagaacctgacagatgccattgcc
cgagcagctgcagacacattacaggggccaatgcaggccgcctaccgtgaagccttccag
agcgtggtgctgcccgcctttgagaagagctgccaggccatgttccagcagatcaatgat
agcttccgcctgggcacacaggaatacttgcagcagctggagagccacatgaagagccga
aaggcacgagagcaagaggcacgggagcctgtgttggcccagctgcggggcctggtcagc
acactgcagggggccactgagcagatggcagctactgtgtccagcagcgttcgggctgag
gtgcagcaccagcttcacgtggctgtgggcagcctgcaggagtcaattttagcacaggta
cagcgcattgttaagggtgaggtgagtgtggcactcaaggagcagcaggccgccgtcacc
tctagcatcatgcaggccatgcgctcagctgctggcacacctgtccctgctgcccacctc
gactgccaagcccagcaagcccatatcctgcagctgctgcagcagggccacctcaatcag
gccttccagcaggccctaacagctgctgacctgaacctggtgctgtatgtgtgtgaaact
gtggacccaggccaggtttttgggcagccaccctgccccctctcccagcctgtacttctt
tcactcatccagcagctggcttctgaccttggcactcgaactgacctcaagctcagctac
ctagaagaggctgtgatgcacctggaccacagtgaccccatcactcgggaccacatgggc
tccgtcatggcccaggtgcgccagaagctctttcagttcttgcaggctgagccacacaac
tcacttggcaaagcggcccggcgtctcagcctcatgctgcacggccttatgacccccagc
ctcccttag
DBGET
integrated database retrieval system
