Sus scrofa (pig): 100521438
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Entry
100521438 CDS
T01009
Name
(RefSeq) LOW QUALITY PROTEIN: protocadherin beta-1
KO
K16494
protocadherin beta
Organism
ssc
Sus scrofa (pig)
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ssc04515
]
100521438
Cell adhesion molecules [BR:
ssc04515
]
Cadherins
Protocadherins
100521438
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_C_2
Cadherin_CELSR2_9th
Cadherin_4
PLAC8
Ly49
Motif
Other DBs
NCBI-GeneID:
100521438
NCBI-ProteinID:
XP_003124097
Ensembl:
ENSSSCG00000014377
UniProt:
A0A8D1H3M4
LinkDB
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Position
2:142741845..142747621
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AA seq
818 aa
AA seq
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MAAARRKLLQSRQVGPLLLFLCFSVGGASTIRYSVAEEMESGSFVANVAKDLGLEVGKLA
TRGARLVSEGNKLHFRLHRKTGDLFMKEKLDRESLCGKADPCVLHFEIVLVEPLQSFRVE
VRVFDINDNXPIFLNKEPLLKIPESTPLGSRFPLQSAQDLDVGLNGLQNYTLSANEYFHL
HTRFRSHGPKYAELVLDKPLDREVQPEVNLTITAVDGGSPPKSGTAHIRVQVLDVNDHVP
QFSRLVYRAQVPENSANGSLVATVTATDLDEGSNKAITYSLAQNPEVILQTFQIDPDTGE
VRLRGALDFEVTETYDIDIQATDGGGLSAHSKVLVEVVDVNDNPPEVTVSSVSSPLPEDS
PLQTVVALFSVRDRDIRVGGKITCFLKEDLPFAVKPTFRNSYSLVTDRRLDREDVSGYNI
TLVATDTGPPTLSSETVIEVLIADINDNPPVFQEDSYILTVRENNSPAVFIGKVHAEDLD
LGENAQVTYSLLPPKSGDLSVFAYISINSDNGKLYALRTMDYEAIQDFQFVVKATDGGFV
SLSSQVSVRVVVLDDNDNRPMILYPLQNGTLPCNDLVPRSAEAGYLVTKVVAVDRDSGQN
SWLSYHLLKATDAGLFSVQQQNGEIRTLRPISERDPRMQKLIILVQDHGQPALSTTASLN
ILLVDGFSEPYLQFQDPFKHPTRVNPSTKYLVISLAVLSFLFLLSVAVIFIIHICQKIKY
REKFTIQEHFYDDCNFPNNLVPGGASGSISQPCPYEMCSATGTGASEFRFLKRFMPNFPF
PHGTGEVKTEAGSSLPPDSDRNRSQGPEGQARASDDYM
NT seq
2457 nt
NT seq
+upstream
nt +downstream
nt
atggcggctgcacggagaaaactcttgcaaagcaggcaagtgggacctcttctccttttt
ctgtgcttttctgtggggggtgcatcaaccatccgctattcggtggcagaggagatggag
agcggttcgtttgtggctaatgtggctaaggacttggggctggaggtagggaagctggcg
acgcgcggggcgcggctcgtttccgaaggcaacaaactacatttccggctgcaccgcaag
acgggagacctgttcatgaaggagaaactagaccgggagtccctttgtggcaaagccgac
ccctgcgtactgcactttgaaatagtcctggtggagccgctgcagtccttccgcgtggag
gtcagggtatttgatattaacgacaatngcccgattttcctaaacaaggagcctcttttg
aagattccagagagcacccccttgggttcacggtttcctctgcagagcgcccaggacctg
gacgtgggcctcaacggtctccaaaattacaccttgagtgccaatgagtattttcacctg
cacacccgcttccgcagccatgggcccaagtatgcggagctcgtgctggataaacccctg
gacagagaggtgcagcctgaggtcaacctgacaattacagccgtggacggagggtccccc
cccaagtctggcacggcacacatccgcgtgcaagttctggatgtcaatgatcacgtgccc
cagttctctcgcctggtgtaccgcgctcaagtaccggaaaatagtgccaacggttctttg
gtggccacagtgacggccaccgacctagatgagggctccaacaaggcaataacttactct
ttagctcaaaacccagaagtaattctccagacatttcagatcgaccctgacactggagag
gttcgattacgaggggctctagattttgaagtcacggaaacatacgacattgacattcaa
gctactgatggaggcggcctctccgcccacagcaaagtcctggtggaagtggtggatgtt
aatgacaatcctcctgaagtgacagtctcctctgtgtccagccctctccctgaggattct
ccactacagactgtagtggcccttttctctgtccgcgaccgagacattcgagtgggagga
aaaatcacctgcttcctcaaagaagaccttccttttgcagtcaaacctacattccgcaat
tcctactcactggtcactgacagacgcttggaccgagaggacgtctctggctataatatc
acccttgttgctacggacactggaccacccactctgtcctcggagactgttatagaggtg
ctaatagctgacattaatgacaaccccccagtgtttcaggaagattcctacatcttgact
gttcgagaaaacaacagccctgcagtctttattggcaaagtgcatgctgaggatctagat
ttgggtgagaatgcccaagtcacatattctctgctgcctccaaaaagtggcgatctatca
gtctttgcttatatctctatcaattcagacaatgggaaactctatgcactgagaaccatg
gattatgaggccattcaagattttcagtttgtggtaaaggcaacagatgggggcttcgtg
tcactgagtagccaagttagtgtccgagtggttgtcttggatgacaatgataaccgccca
atgatcttgtaccctctgcagaatggcaccttgccttgcaatgacctggtacccaggtct
gcagaggcaggctacctggtgaccaaggtggtggctgtggatcgcgattcgggtcagaat
tcttggctttcgtatcatttacttaaggccactgatgctgggttattctctgttcaacaa
caaaatggggaaatccgtacattgcggccgatatctgagagagaccccaggatgcagaag
ctgatcattcttgttcaggatcatggccaaccagctctttctactactgcctcactcaac
atccttctggtagatggcttttctgagccttatctgcagttccaggatccattcaaacat
cctacaagggtaaatccatccactaaatatttggtcatttctctggctgtgctttccttt
ctctttctcctctctgtcgcggtgatcttcattatacacatctgccagaagattaaatac
agagaaaagttcacaatccaagagcatttctatgatgactgtaatttccctaacaacctg
gtaccaggaggagccagtgggtccatatcccagccttgtccctatgaaatgtgctcagcc
actggcacgggcgctagtgagttccggtttctcaagcgctttatgcccaacttccctttc
ccccatggcactggagaggtaaaaacagaggctggctccagtttaccaccagattccgac
aggaataggtctcaggggccagaggggcaggcccgagcatctgatgactatatgtag
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