Sus scrofa (pig): 100521629
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Entry
100521629 CDS
T01009
Symbol
SRRM1
Name
(RefSeq) serine/arginine repetitive matrix protein 1 isoform X1
KO
K13171
serine/arginine repetitive matrix protein 1
Organism
ssc
Sus scrofa (pig)
Pathway
ssc03013
Nucleocytoplasmic transport
ssc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
100521629 (SRRM1)
03015 mRNA surveillance pathway
100521629 (SRRM1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssc03019
]
100521629 (SRRM1)
03041 Spliceosome [BR:
ssc03041
]
100521629 (SRRM1)
Messenger RNA biogenesis [BR:
ssc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
100521629 (SRRM1)
Spliceosome [BR:
ssc03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR-related proteins
100521629 (SRRM1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PWI
Motif
Other DBs
NCBI-GeneID:
100521629
NCBI-ProteinID:
XP_020951215
LinkDB
All DBs
Position
6:82309192..82348076
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AA seq
918 aa
AA seq
DB search
MDAGFFRGTSAEQDNRFSNKQKKLLKQLKFAECLEKKVDMSKVNLEVIKPWITKRVTEIL
GFEDDVVIEFIFNQLEVKNPDSKMMQINLTGFLNGKNAREFMGELWPLLLSAQENIAGIP
SAFLELKKEEIKQRQIEQEKLASMKKQDEDKDKRDKEEKESSREKRERSRSPRRRKSRSP
SPRRRSSPVRRERKRSHSRSPRHRTKSRSPSPAPEKKEKTPELPEPSVKVKEPSVQEATS
TSDILKVPKPEPVPEPKEPSPEKNSKKEKEKEKTRPRSRSRSKSRSRTRSRSPSHTRPRR
RHRSRSRSYSPRRRPSPRRRPSPRRRTPPRRMPPPPRHRRSRSPVRRRRRSSASLSGSSS
SSSSSRSRSPPKKAPKRTSSPPRKTRRLSPSASPPRRRHRPSPPATPPPKTRHSPTPQQS
NRTRKSRVSVSPGRTSGKVTKHKGTEKRESPSPAPKPRKVELSESEEDKGGKMAAADSVQ
QRRQYRRQNQQSSSDSGSSSSSEDERPKRSHVKNGEVGRRRRHTPSRSASPSPRKRQKET
SPRMQMGKRWQSPMTKSGRRRRSPSPPPTRRRRSPSPAPPPRRRRSPTPPPRRRTPSPPP
RRRSPSPRRYSPPIQRRYSPSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSS
PVTKRRSPSLSSKHRKGPSPSRSTREARSPQPNKRHSPSPRPRAPQTCSSPPPARRGASS
SPQRRQSPSPSSRPIRRVSRTPEPKKTKKVASPSPQSVRRVSSSRSVSGSPEPAAKKPPA
PPSPVQSQSPSTNWSPAVPVKKAKSPTPSPSPARNSDPEGGGKKKKKKKDKKHKKDKKHK
KHKKHKKEKAVAAAAAAAVTPTAIAAPTTTSAQEEPEAEPEPKKETESEAEDNLDDLEKH
LREKALRSMRKAQVSPQS
NT seq
2757 nt
NT seq
+upstream
nt +downstream
nt
atggacgcgggattcttccgcggaacaagtgcagaacaggataatcggttcagcaacaaa
caaaagaagctactgaagcagctgaaattcgcagaatgtctagaaaaaaaggtggacatg
agcaaagtaaatttggaggttataaagccttggataacaaaacgagtaacagaaatcctt
ggatttgaagatgatgttgtgattgagtttatattcaaccagctggaagtgaagaatcca
gattccaaaatgatgcaaatcaacctgactgggtttttgaatggaaaaaatgctagagaa
tttatgggagaactgtggcccctgctcttaagtgcacaggaaaacatcgctggaatccct
tctgctttcctagaactgaagaaagaagaaataaaacagagacagattgaacaagaaaag
ttagcatctatgaaaaagcaagatgaagacaaggataagagggataaagaagaaaaagag
agcagcagagaaaaaagggagagatctcgaagcccaagaagacgcaaatccagatctcct
tcccctagaagacgatcttcccctgtcaggagagagagaaagcgcagtcattctcgatct
ccccgtcacagaaccaagagccggagtccttcccctgctccagagaagaaggaaaaaact
ccggagctcccagagccatcagtgaaagtgaaagaaccttcagtacaagaggccacttct
actagtgacatcctgaaagttcccaagcctgaacctgtaccagagcctaaagaaccttct
ccagagaagaattccaaaaaggaaaaggaaaaggagaagaccagaccaagatctcggtca
cgttccaagtcaagatcccggacacgttctcgctctccttctcatactcgacctagaagg
cgccatagatcccgatcaagatcatactcccctagaaggcggccaagcccaagaagacgg
ccatctcctcgaagaagaactccaccgagacgaatgcctcctccaccaaggcatagaagg
agtagatctccagtgagacgaagaaggcgttcatcagcatccttgtctggaagtagctca
tcatcatcttcgtctcgttcccggtcaccgccaaagaaggctccaaagaggacatccagc
ccccctcgaaaaactcgtaggctatctccttcagcaagtcctccaaggcgaaggcatagg
ccctcacctccagcaactccaccaccaaaaactcgtcattccccaacaccccagcagtca
aatcgtacaaggaagagtcgtgtttctgtctctccagggaggacttcaggtaaagtgaca
aaacataaaggtactgagaaaagagagtctccttcaccagcacccaagcctagaaaagta
gaattatccgagtcggaagaagataaaggtggcaaaatggctgcagcagattctgtgcag
cagagacgccaatacagacgacagaaccagcaatcttcatctgattctggctcctcctct
tcctcagaagacgagcgacccaaaaggtcccacgtgaaaaatggtgaggttggcaggcgg
cggagacataccccttcccggagtgcctctccatcacctcgaaagcgccagaaagagact
tcccctcggatgcagatgggaaagcgatggcaatcgccaatgaccaaaagtggtagacgg
aggagaagtccttccccaccacccaccagaaggcgacgttctccctctcctgctcctcca
cctcgacgacgcaggtctcccacgccaccaccacgacgaaggactccttctcctccccca
cgtcgacgctcaccttccccaagaagatactctcctccaatacagaggagatactctcct
tctccacctccaaagagaagaacagcgtcaccccctcctccccctaaacgaagggcatca
ccatctccgccaccaaagcgtcgggtctcccattcgccacctcccaaacaaagaagctcc
ccagtcactaagagacgttcaccttcattgtcatcaaagcataggaaagggccttcccca
agccggtctacccgggaagcccggtcaccacaaccaaacaaacggcattcgccctcacca
cggcctcgagctccgcagacttgctcaagtcctccgcctgctcgaagaggagcatcgtca
tcaccccaaagaaggcagtccccatctccaagttctaggcccattaggagagtctccagg
actccggaacccaaaaagacaaaaaaagttgcctcaccaagccctcagtcagtaaggagg
gtctcatcttctcgatctgtctcgggatctcctgagccagcagctaaaaaacccccagca
cctccatctcctgtccagtctcagtcaccttctaccaactggtcaccagcagtaccagtc
aaaaaggctaaaagcccgacaccaagcccatcaccggcaaggaattcagacccagaagga
ggtggaaagaaaaagaaaaaaaagaaggataagaaacataaaaaggataagaagcacaag
aagcataaaaaacacaagaaggaaaaggctgtggctgcagccgctgcagctgctgtgacc
cctacagccattgctgctcccacaaccacatcagcacaggaagaaccggaggcagagcca
gagcctaagaaggagactgaaagtgaggccgaagataaccttgatgacttagaaaagcac
ctgcgcgaaaaggccctgagatcaatgcggaaggctcaagtgtccccacagtcctag
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