Sus scrofa (pig): 100521779
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Entry
100521779 CDS
T01009
Name
(RefSeq) LOW QUALITY PROTEIN: protocadherin beta-4
KO
K16494
protocadherin beta
Organism
ssc
Sus scrofa (pig)
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ssc04515
]
100521779
Cell adhesion molecules [BR:
ssc04515
]
Cadherins
Protocadherins
100521779
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_C_2
Cadherin_CELSR2_9th
Cadherin_4
Motif
Other DBs
NCBI-GeneID:
100521779
NCBI-ProteinID:
XP_020940565
Ensembl:
ENSSSCG00000014378
LinkDB
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Position
2:142842209..142846188
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AA seq
807 aa
AA seq
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MSASGPTMETREGIQPNRQVVFIVMAFLSQAHPAPIRYSVLEESESGSFIAHLTKDLGLG
IGELADRSARIVSDDDKQRLQLDHQTGDLLWREKPDREELCGPTEPCILPFQVFLEAPVQ
FVEGELLIQDINDHSPVFPDREMLLKIPENSQPGAVFPLQFAQDLDVGSNGLQNYTISPN
SHFHVVTRTRSEGKKYPDLVQDKALDREEQPELSLTLTALDGGSPPRSGTSMVRILVMDV
NDNAPEFVTSPYEVQVLENSPLDSPILTVLARDRDAGNFGKVSYGFFQASDEIKQTFSIN
EVTGEIRLTKKLDFEQMKSYHLEIEATDGGGLSGKGAVVIEVVDVNDNAPELTISSLTSS
VPENSPETVVAVFRIRDRDSGDNGKMICSIPDNLPFVLKPTFKNYYTLVTESPLDREERA
EYNITISVSDLGXPRRHTQHNLTVRVADVNDNAPAFSQPAYTLRVRENNSPALHIGTVRA
TDADAGANAQLTYSLLPPSDPHLPLASLVAINPDTGQLFALRALDYEALRAFDFQVRAAD
RGAPALSSQARVRVLVADANDHAPVVLYPPPNASAPCTELLPRAAEPGYLLAKVVAVDGD
AGQNAWLSYRLLQATEPGLFGVGAHSGEVRTARPLSERDAPRQRLLLLVRDHGEPPLSAS
VPLHVLLVDGFSQPXLPPPEAPGRAPGAGAGADEPLTVALVGALACVSALLVGALLALAA
GRLCRRGGAASAGGCAGPAEGGVPGQLLDVGGTGTLAHGYRYEVCLTGDRRTGEFQFLKP
VFPNLLLQDPEGEIKNSPNFRNSLVLN
NT seq
2424 nt
NT seq
+upstream
nt +downstream
nt
atgtcagcatccggacccaccatggagactcgagagggaattcagccgaacaggcaagta
gtctttatcgtgatggcattcctgtctcaggctcaccccgcgcctattcgttactctgtg
ctggaagaatcagagagcggctcctttatagctcatctgactaaggacctgggcttggga
atcggggaactggcggaccgctccgccaggatagtgtctgacgatgacaagcagcgcttg
cagctggatcatcagaccggagacttgctttggagggagaaaccagatcgggaagagctg
tgtggccccactgaaccctgtatactgcctttccaagtattcctagaagctccggtgcag
tttgttgaaggggaattactaattcaggacatcaacgaccactccccagtattcccggac
agggaaatgctcttgaaaataccagaaaacagccagccaggggctgtatttcccctgcaa
ttcgctcaggatttggatgtgggcagcaatggtcttcaaaattacaccatcagccccaat
tctcattttcacgttgtcactcgaactcgtagtgagggcaagaaatacccagatttggtg
caggacaaagcactggatcgagaggagcagcctgagctcagcttaaccctcacggcactg
gatggtgggtctccacctcggtctggcaccagcatggtgcgaatcctggtcatggacgtc
aatgacaatgcgcctgagtttgtgacctctccatatgaggtgcaggttctggaaaacagc
ccccttgactcccccatacttactgttttagctagggatagagatgctggaaacttcggg
aaggtctcctatggcttcttccaagcatcagatgaaattaagcaaactttctcaataaac
gaagtcacaggagaaatccggctgacaaagaaactggattttgaacaaatgaaatcttat
cacctggaaattgaggctacagatggaggaggcctttctggaaaaggcgctgtggtcata
gaggtggtagatgtgaatgacaacgcccccgaactgaccatatcttcgctcaccagctcc
gtcccagaaaacagtcctgagactgtggtcgctgtcttccgaatcagagacagagattct
ggagacaacggaaagatgatctgctctattccggataatctgcccttcgttctaaaaccg
actttcaagaactactacaccctggtaacggagagcccgctggaccgagaggaaagagcc
gagtacaacatcaccatcagcgtcagcgacctggggnacccccggcggcacacccagcac
aacctgaccgtgcgcgtggccgacgtcaacgacaacgcgcccgccttcagccagcccgcc
tacaccctgcgggtccgcgagaacaacagccccgccctgcacatcggcaccgtccgcgcc
accgacgccgacgcgggcgccaacgcccagctcacctactcgctgctgccgccctccgac
ccgcacctgcccctcgcctcgctcgtggccatcaaccccgacaccggccagctcttcgcc
ctgcgcgccctcgactacgaggccctgcgcgccttcgacttccaggtgcgcgccgccgac
cgcggcgcgcccgcgctcagcagccaggcgcgggtgcgcgtgctcgtggccgacgccaac
gaccacgcgcccgtcgtgctctacccgccgcccaacgcctcggcgccctgcaccgagctg
ctgccccgggcggccgagccgggctacctgctcgccaaggtggtggcggtggacggcgac
gcgggccagaacgcctggctgtcctaccggctgctgcaggccaccgagcccgggctcttc
ggcgtgggcgcgcacagcggcgaggtgcgcacggcccggccgctgagcgagcgcgacgcg
ccccggcagcggctgctgctgctggtgcgggaccacggcgagccgccgctctcggccagc
gtcccgctgcacgtgctgctggtggacggcttctcgcagcccnacctgccgccgcccgag
gcccccggccgggcgccgggcgccggcgccggcgcggacgagccgctcaccgtcgccctg
gtgggggcgctggcgtgcgtgtcggcgctgctggtgggggcgctgctggccttggcggcg
gggcggctgtgccggcggggcggggcggcctcggcggggggctgcgcggggcccgcggag
ggcggcgtcccgggccagctgctggacgtgggcggcacgggcaccctggcccacggctac
cgctacgaggtgtgtctgacgggagaccgcagaactggtgagttccaattcctgaagccg
gttttcccgaacctcttgcttcaggaccctgagggagaaattaagaacagccccaacttc
aggaatagcttagtactcaattaa
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