Sus scrofa (pig): 100522666
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Entry
100522666 CDS
T01009
Symbol
RAD50
Name
(RefSeq) DNA repair protein RAD50
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
ssc
Sus scrofa (pig)
Pathway
ssc03440
Homologous recombination
ssc03450
Non-homologous end-joining
ssc04218
Cellular senescence
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
100522666 (RAD50)
03450 Non-homologous end-joining
100522666 (RAD50)
09140 Cellular Processes
09143 Cell growth and death
04218 Cellular senescence
100522666 (RAD50)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ssc03032
]
100522666 (RAD50)
03400 DNA repair and recombination proteins [BR:
ssc03400
]
100522666 (RAD50)
DNA replication proteins [BR:
ssc03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
100522666 (RAD50)
DNA repair and recombination proteins [BR:
ssc03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
100522666 (RAD50)
BRCA1-C complex
100522666 (RAD50)
NHEJ (non-homologous end-joining)
MRX complex
100522666 (RAD50)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
Rad50_zn_hook
AAA_21
SbcC_Walker_B
SMC_N
AAA_15
AAA_29
DUF2703
Motif
Other DBs
NCBI-GeneID:
100522666
NCBI-ProteinID:
XP_003354322
Ensembl:
ENSSSCG00000014280
UniProt:
A0A8D0I7K1
A0A480WZ12
LinkDB
All DBs
Position
2:134844460..134939188
Genome browser
AA seq
1312 aa
AA seq
DB search
MSRIEKMSILGVRSFGIEDKDKQIITFFSPLTILVGPNGAGKTTIIECLKYICTGDFPPG
TKGNTFVHDPKVAQETDVRAQIRLQFRNVNGELVAVQRSMLCTQKSKKTEFKTLEGVITR
TVHGEKVSISSKCAEIDREMISSLGVSKSVLNNVIFCHQEESNWPLSEGKALKQKFDEIF
SATRYIKALETLRQVRQTQGQKVKECQTELKYLKQNKEKACEIRDQITSKEAQLTSSKEI
VKSYENELDPLKSRLKEIEQNLSKIMRLDNEIKALDSRKRQMEKDNSELEQKMEKVFQGT
DEQLNDLYHNHQRTVREKEKRLVDCQRELEKLNKESRLLNQEKSELLVEQGRLQLQADRH
QEHIRARDSLIHSLATQLELDGFERGPFSERQIKNFHKLVRERQEREAETASRLMNDFAE
KETLKQKQIDEIRDKKTGLGRIIELKSEILSKKQNELRNVKYELQQLEGSSDRILELDRE
LTKAEHELSKAEKNSNVETLKIEVISLQNEKADLDRTLRKLDQEMEQLNHHTATRTQMEM
LTKDKADKDEHIRKIKSRHSDVLSSLLGYFPNKKQLEDWLHSKSKEINQTRDKIAKLNKE
LASAEQNKNHIINEVKSKDEQLSSYEDKLFDVCGSQDFESDLDRLKEEIEKSSKQRAMLA
GATAVYSQFITQLTDENQSCCPVCQRVFQTEAELQEVISDLQSKLRLAPDKLKSTESELK
KKEKRRDEMLGLVPMRQSIIDLKEKEIPALRNKLQNVNRDIQSLKIDIEEQDTLLGAIIP
EEESAKVCLTDVTIMERFQLELKDVERKIAQQAAKLQGVDLHRTIQQVNQEKQEKQHKLD
TVASKIELNRKLIQDQQEQIQHLKSTTNELKSEKLQISTNLQRRQQLEEQTVELSTEVQS
LQREIKDAKEQVNPLETTLEKFQQEKEELINKKNTSSKIAQDKINDIKEKVKNIHGYVKD
IENYIQDGKDEYKKQKETELNKVIVQLSECETHKEKVNKEMGIMRQDIDTQKIQERWLQD
NLTLRKRNEELKEVEEERKQHLKEMGQMQVLQMKNEHQNLEEKIENIKRNHSLAIGRQKG
YEEEIIHFKKELREPQFRDADEKYREMLIVMRTTELVNKDLDIYYKTLDQAIMKFHSMKM
EEINKIIRDLWRSTYRGQDIEYIEIRSDADENVSASDKRRNYNYRVVMLKGDTALDMRGR
CSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDRENIESLAHALVEIIKSRSQQR
NFQLLVITHDEDFVELLGRSEYVEKFYRIKKNIDQCSEIVKCSVSSLGSYVH
NT seq
3939 nt
NT seq
+upstream
nt +downstream
nt
atgtcccggatcgaaaagatgagcattctgggcgtacggagttttggaatagaggataaa
gataagcaaattattactttcttcagtcccctcacaattttggtcggacccaatggggcg
gggaagacgaccatcattgaatgtttaaaatatatttgtactggagattttcctcctgga
accaaaggaaatacatttgttcacgatcccaaggttgctcaagaaacagatgttagagcc
cagattcgtctgcagtttcgtaatgtcaatggagaacttgtagctgtacagagatctatg
ctttgtactcagaaaagcaaaaagaccgaatttaaaaccttggaaggagtcattaccaga
acagtgcatggcgagaaagtcagtatcagctccaagtgtgcggaaattgaccgagaaatg
ataagttctctgggagtttccaaatctgtgctcaataatgtcattttctgtcaccaagaa
gagtctaattggcctttaagtgaaggaaaagctttgaagcaaaaatttgatgagattttt
tcagcaacaaggtatattaaagccttggaaacacttcggcaggtacgtcagacacagggt
cagaaagtaaaagagtgtcaaacagaactaaaatatctgaagcagaataaggaaaaagct
tgtgagattcgcgatcagattactagtaaggaagcccaattaacatcgtcaaaggaaatt
gtcaagtcctatgagaatgaacttgatccattgaagagtcgtctaaaagaaattgaacag
aatctctctaaaataatgagactcgacaatgaaattaaagctttggatagccgaaagaga
caaatggaaaaagataatagtgaattggaacagaaaatggaaaaggtttttcaagggact
gatgagcaactaaatgatttatatcacaatcaccagagaacagtaagggagaaagaaaag
agattggtagactgtcagcgtgaactggaaaaattaaataaagaatctaggcttctcaat
caagaaaaatcagaactacttgttgaacagggtcgtctacagctacaagcagatcgtcat
caagagcatattcgagctagagattcgttgattcattctttggcaacacagttagaattg
gatggctttgagcgtggaccattcagtgaaagacagataaaaaattttcacaaacttgtg
agagagaggcaagaaagggaagcagaaactgccagccgactaatgaatgactttgcagaa
aaagagactctgaaacaaaaacaaatagatgaaataagggataagaaaactggactggga
agaataattgagctaaaatcagaaatcctaagtaagaagcagaatgagctgagaaatgtg
aagtacgaattacagcagttggaaggatcttcagatagaattcttgaactggaccgagag
ctcacaaaagcggaacatgagctaagcaaggctgagaaaaacagcaatgtagaaactcta
aaaatagaagtaataagccttcagaatgagaaagcagacctagacaggaccctgcgtaaa
ttggaccaggagatggagcaattaaaccatcatacagccacacgcacccagatggagatg
ctgaccaaagacaaagctgacaaagatgaacacatcagaaaaataaagtctaggcacagt
gatgtattatcttcattgttagggtattttcccaacaaaaaacagcttgaagactggctt
catagtaaatcaaaagaaatcaatcagaccagggacaaaattgccaaattgaacaaggaa
ctagcttcagctgagcaaaataaaaatcatataattaatgaagtaaaaagtaaggatgag
cagttgtccagctatgaagacaaactgtttgatgtttgtggtagccaggattttgaaagt
gatttagacaggcttaaagaagaaattgaaaaatcctcaaaacaacgagccatgctggct
ggagctacggcagtttactcccagttcatcactcagctaacagatgaaaaccagtcatgt
tgccccgtctgtcagagagtttttcagacagaagctgaattacaagaagtcatcagtgat
ttgcagtctaagctgaggcttgctccagataaactcaagtcaacagaatcagagctgaag
aaaaaagaaaagcggcgtgatgaaatgctgggacttgtgcccatgaggcaaagcataatt
gatttgaaggagaaggaaataccagcattaagaaacaaactgcagaatgtgaacagagat
atacagagcctaaagattgacatagaagaacaggatacacttttgggtgcaataatacct
gaagaagaaagtgctaaagtgtgtctgactgatgttacaattatggagaggttccagctg
gaacttaaagatgttgaaagaaaaatcgcacaacaagcagctaagctccaaggagtagat
ttgcatagaactattcaacaagtaaaccaggaaaaacaagaaaaacagcacaaactagat
acagttgccagtaagattgaactgaatcgaaagcttatacaggaccagcaggaacagatt
caacacctaaaaagtaccacaaatgagcttaagtcagagaaacttcagatatctactaat
ttgcagcgccgtcagcaactggaggagcagactgtggaattatctactgaagttcagtcc
ttacaaagagaaataaaggatgctaaagagcaggtaaaccctttggaaacaacattggaa
aagttccagcaggagaaagaagaattaatcaacaaaaaaaatacaagcagcaaaatagca
caggataaaataaatgatatcaaagagaaggttaaaaatattcatggttatgtgaaagac
attgaaaattatattcaagatggaaaagatgagtataagaagcaaaaagaaactgaactt
aataaagtaatagttcaactaagtgaatgtgagacgcacaaagaaaaggttaataaggaa
atgggaatcatgagacaagatattgatacacagaagatacaagaaaggtggctacaggat
aaccttactttaagaaaaagaaatgaagaactgaaagaggttgaagaagaaagaaaacag
catttgaaggaaatgggtcaaatgcaggttttacaaatgaaaaatgaacatcagaatttg
gaagaaaaaattgaaaatataaaaagaaatcacagtttggcaatagggcgacagaaaggt
tatgaggaagaaattattcactttaagaaagaacttcgagaacctcaatttcgggatgct
gatgaaaagtatagggaaatgctgattgttatgagaacaacagagcttgtgaacaaggat
ctagacatttattataagacccttgaccaagcgataatgaaatttcacagtatgaaaatg
gaagaaatcaacaaaattattcgtgacctctggcgaagtacctatcgtggacaagatatt
gaatacatagaaattcgatctgatgccgatgaaaatgtatcagcttctgataagaggcgg
aattacaactaccgagtggtgatgctaaagggagacacagccttggatatgcgaggacgg
tgcagtgctggacagaaggtattagcttcactcatcattcgcctagccctggctgaaaca
ttctgcttaaactgtggcattctagccttggatgagccaacaacaaatcttgaccgtgaa
aatattgaatctcttgcacatgctctggttgagataataaaaagtcgctcacagcagcgt
aacttccagcttctggtaatcactcatgatgaagattttgtggaactcttagggcgttct
gaatatgtggaaaaattctacaggattaagaagaatattgatcagtgctcagagattgta
aaatgcagtgttagttccctaggatcttatgtgcattaa
DBGET
integrated database retrieval system
