Sus scrofa (pig): 100523091
Help
Entry
100523091 CDS
T01009
Symbol
CDRT1
Name
(RefSeq) CMT1A duplicated region transcript 1 protein isoform X1
KO
K10266
F-box and WD-40 domain protein 10
Organism
ssc
Sus scrofa (pig)
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ssc04121
]
100523091 (CDRT1)
Ubiquitin system [BR:
ssc04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
100523091 (CDRT1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
WD40_Prp19
EIF3I
Beta-prop_TEP1_2nd
WDR55
Beta-prop_TEP1_C
Beta-prop_SCAP
Beta-prop_CAF1B_HIR1
Beta-prop_SPT8
Beta-prop_DCAF4
Beta-prop_EML_2
Beta-prop_EML
F-box-like
F-box
WD40_MABP1-WDR62_2nd
NBCH_WD40
Beta-prop_WDR90_POC16_2nd
ANAPC4_WD40
Beta-prop_WDR75_1st
Beta-prop_IP5PC_F
Motif
Other DBs
NCBI-GeneID:
100523091
NCBI-ProteinID:
XP_020923557
LinkDB
All DBs
Position
12:complement(58896184..58924524)
Genome browser
AA seq
1172 aa
AA seq
DB search
MENLELRLKNAPYFRCERGDDSVPVCRKCETCVLAWKVFSTKEWFRRVGESSQTRFLVSV
LVQLDSLYLLHYFQNILQTTQGKDFVYHRSRVNLSNQEGRMAKFSLNQRLDKTVEQKMRE
LLCWFGNSTHQMKVNYTLLLMQMCQPKLLLTAASVIRVLFQREWSSVSGTHPDFNDVFFF
PEKGHAAPGGLPQVCWAARTKHATFSLSQTSGKANLQQNVRRAAAPSDGRWKSSVRCISE
MTRLFPEKASESRAESAPRDVLVDPDAVRELSSGLSSYRDFIRQLPAHLSKHILSMLDRN
TLNRCASVSQHWAALAHQVRTDLSVHSFIQHQLAFLQGSYTRGVDPRYAHRVTIPVPKMA
DGGTRLRVKSQKWKLRTKNDYSLWSAYQSQETQQVQLEERNVFCGTYNIRILSDMWDRNR
IIHYSGGGLLAVSSNRKIHLLDLIQIKELPVKFRGHAGSVRALFLCEEENFLLSGSYDLS
IRYWDLKSGACVRIFNGHQGTITCMDVHKNRLASGAKDCQVKEWDIDTGKCLKTFRHKDP
ILATRINDTYIVSSCEKGTVKVWQVATAQLLKEGATRNRPSSGSHSSLTGERALGRGGTG
STGLGAKAKSAQTLNGHEGAVRCLCFDQWHLVSGSADGLVMAWSMVGKYERCLMAFKHPK
PCDRNVGKVTRTWGEDPRPEGSWFTSRATEGRPPRLQGQSRPLPAIPDTRSGLPEAGTAR
RSVPFQGGAPRGPSLPPGHQCLCGWQDPHLQPPQRALPEGDEGQWQRMVINTESNVLMFQ
FENVKWQYPPEQAGPKDKAEDKEENSLTEVLSKSSTQINSPRDSTSSKQTARESLLSKPH
KSRAPLRVSRLPTAALTEAPLSQGKPKSPRKDGRRQMGCRGADGTAGEQENLEAKSLTGD
DAEKVPKQGQLGTGADLMSRPKKKSWHIAMSPDQLLLTVHALQKAHTSGECAYPRRPQAQ
VLDAWGPSISYPRKVLSLKGQSVQHAVDRLRRSSPPTDVRQTSVPLEVQKLQPNLKTSLQ
SPRVQSTIPQPVLIRPRFSGSSKGEDGATSSTEGTVRSSGPLTSPQVIKPNRMLAPPLGG
TAQAAKKDRPRFHTALDPFRMNTEFMLLTVKEEKEYEQAKVKENQAAEPAGRVDPERASR
AAWIRKIKGLPIDDFMKPGKTAAPELGQNIFI
NT seq
3519 nt
NT seq
+upstream
nt +downstream
nt
atggagaacctggagttgcggctcaagaatgccccctacttccgatgcgagaggggggac
gactctgtccccgtgtgccggaagtgtgagacgtgtgtcctggcctggaaggtcttctcc
accaaagagtggttccgaagggtgggcgagtcatcgcagacgaggttcctggtcagcgtc
ctggtgcagctggacagcttgtacctgctacactactttcaaaacatcctccagaccact
caggggaaggacttcgtctaccaccggtcccgggtcaacctcagcaaccaggaggggcgc
atggccaagttctccttgaaccaaaggctggataagacggtggaacagaagatgcgggag
cttttgtgctggtttgggaacagcactcaccagatgaaggtgaattacacactcttgctg
atgcagatgtgccagcccaagttactgctcaccgccgcctccgtcatccgcgtcctgttt
cagagagagtggagcagcgtctcagggacccacccggacttcaacgatgtgttcttcttc
cctgagaaaggccacgccgccccaggcgggctcccacaagtctgctgggcggccagaacc
aagcacgcgaccttctcgttgtcccagacttcagggaaagcgaacctgcaacagaacgtg
cggcgggcagcggcccctagtgacggacggtggaagagttcagtccggtgcatttccgag
atgaccaggctgtttcctgagaaagcgagcgagtccagagcagagtcggccccccgcgac
gtgttggtggaccccgatgccgtcagagagctgtcctctgggctcagcagctaccgcgac
ttcatccgtcagctgcccgcccacctctccaagcacatcctaagtatgctggacaggaac
accctgaacaggtgtgcgtccgtgagccagcactgggccgcgctggcgcaccaggtccgg
accgacctgtccgtgcactccttcatccaacaccagctcgccttcctgcaggggtcctac
acccggggcgtagatcctagatacgcccacagggttactatccccgttcccaagatggcg
gacggcgggacgcgcctgcgtgtgaaaagccagaaatggaaactgagaacaaagaacgac
tacagcctgtggagcgcgtaccagagccaggagacccagcaggtgcagctggaggagagg
aacgtcttctgtgggacgtacaacatccgtattctctctgacatgtgggaccgaaacaga
atcatccactattccggcggaggcttgttggctgtgtcgtccaatcggaagatccacctt
ctggacctcatacaaataaaggagctacctgtcaagttccgaggccacgccggcagcgtc
cgtgccctcttcctgtgtgaggaggagaactttctcctgagcgggagttacgacctgagt
atcagatactgggatctgaaaagcggggcttgcgtacgaatcttcaacggccaccagggg
accatcacgtgcatggatgtccataagaacaggctcgcctctggagcaaaagattgccag
gtaaaagagtgggatatagacacaggcaagtgcctgaagaccttccgacataaagacccc
atcttggccaccagaatcaatgacacgtacatcgtgagcagctgtgagaaagggacagtc
aaagtgtggcaggtcgccacggcccagctgctcaaggaaggtgccaccaggaacagaccc
tcttccggatcccattcctccttaactggggagagagctctgggcaggggtggcacaggc
tccactggcctgggagcaaaagccaagtctgctcagactctcaacggccacgagggagct
gtgaggtgtctgtgctttgaccagtggcatctcgtctcgggaagcgctgatggcctggtc
atggcctggagcatggtggggaagtacgagcggtgcctcatggccttcaagcacccaaag
ccctgtgaccgaaacgtaggaaaagtaaccagaacgtggggagaggaccctcgtcctgag
ggttcatggtttacatccagagctacagaaggacggccaccacggcttcaggggcagtca
cggcctctcccagccatacccgacacgcgcagcggtctgccggaagcgggtactgcccgt
cgctctgttcccttccagggaggtgctccacgtggcccttctcttcctccgggtcatcag
tgcctgtgcggatggcaagatccgcatttacagcctcctcaacgggcactgcctgaaggt
gatgaaggccaatggcagaggatggtgatcaacaccgaaagcaatgttctcatgttccag
tttgagaacgtcaagtggcagtaccccccggaacaggccggaccaaaggacaaagcggag
gacaaggaagaaaacagcctcacggaagttctctccaagtccagcactcagattaacagc
ccgagggactccacatccagcaaacaaacagcccgggagtccctgttaagcaaacctcac
aagtcccgtgcccccctgagggtatccaggttacctacagcagcgctgacagaggcacct
ctaagtcaagggaagccaaaatcaccccgaaaagacggcaggaggcaaatgggctgcagg
ggagcagatggcacagctggtgagcaagagaatttggaagcaaaatccctcactggagat
gatgcagagaaagtacccaaacaaggacaactgggaactggggcagacttgatgagtcgc
ccaaagaaaaagtcctggcacatcgccatgtctcctgaccagctcctcctgaccgtccac
gccctgcagaaagcccatacctcgggggagtgtgcctatccccggaggccccaagcccag
gtcctcgatgcctggggaccttccatttcatacccgaggaaggtcctgagtttgaagggc
cagtctgtccagcatgccgttgatcggttgagacgcagcagccctcccacagacgtgaga
caaaccagcgtccccctcgaagtccagaagcttcagcccaacctgaagacgtctctgcag
agtcccagggtccagtctaccataccccagcctgtgcttatccgccccaggttctcgggc
agctcgaagggtgaagacggggcaaccagctccaccgaggggacggtgcgcagctctgga
cccctaaccagcccccaggtcatcaaaccaaaccgcatgctggctccacccctgggcggc
acagcccaggctgccaagaaagatcggccgcgcttccacacggccctcgacccctttcgg
atgaacacggagttcatgctcttgactgtgaaggaggagaaggagtacgagcaggccaag
gtgaaggagaaccaggccgcggagcccgcgggccgcgtggatccagaaagagccagcaga
gccgcatggatccggaagatcaaaggcctgcccatagatgatttcatgaagccaggaaaa
acagcagcccctgaactgggacagaacatatttatctga
DBGET
integrated database retrieval system
