Sus scrofa (pig): 100523131
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Entry
100523131 CDS
T01009
Name
(RefSeq) short transient receptor potential channel 2-like
KO
K04965
transient receptor potential cation channel subfamily C member 2
Organism
ssc
Sus scrofa (pig)
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
ssc04040
]
100523131
Ion channels [BR:
ssc04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
100523131
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
XRCC1_N
TRP_2
Ion_trans
PKD_channel
Ank_2
Ank
YVC1_C
Motif
Other DBs
NCBI-GeneID:
100523131
NCBI-ProteinID:
XP_020918130
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All DBs
Position
9:complement(6449641..6488707)
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AA seq
1258 aa
AA seq
DB search
MAPVKISHVVSFSSQDPKYPVANLLNPDSQRGPWLSCPRDKSGQLKVELQLERAVPIGYI
DVGNCGCAFLQIDVGRSSWSLDRPFVTLLPATMLMSLADSKQGKNRSGVRMFKDDDFLAP
ASGESWDRLRLTCSQPFTRHQSFGLAFLRVCSSLDSSGDPAVGPSGPTRSRMSHGSSDAQ
EPGPSPWLANPSIRRTFFPDPQTSTREISELRNILQQLQPGTLGRSACMVLSAARKAAPA
CVADPHTRQAEPGPRHRGSAESRPEERNSGSDEGRTKRRKVQARRPVSSSNPQAQRKEPA
KAGRRERRPPQTRRSGAQERGQCPICTGSFSLEVLPQHAATCGETASPSSSPSASPAELW
HPLTLEPHPLCFLIQPPPNWPEIVNRKLQFPPPLLGAIQEGRLGLVQQLLESGAEAPGGG
PGGPPRNVEEAEDRSWREALNLAIRLGHEAITDVLLANVKFDFRQIHEALLVAVDTNQPA
VVRRLLARLEREKGRKVDTRSFSLAFFDSSIDGSRFAPGVTPLTLACQKDLYEIAQLLMD
QGHTIARPHPVSCACLECSNARRYDLLKFSLSRINTYRGIASRAHLSLASEDALLAAFQL
SRELRCLARKEPEFKPEYIALESLSQDYGFELLGMCRNQSEVTAVLNDLGKDSGAEPEAE
GLGQAFEEGIPNLARLRLAVNYNQKRFVAHPICQQVLSSIWCGNLAGWRGSTIVWKLFVA
LLIFLAMPFLCLGYWLAPKSRLGRLLKIPVLKFLLHSASYLWFLIFLLGESLAMETQLST
FRGRSRSVWETSLHMVWVTGFLWFECKEVWIEGLRSYLLDWWNFLDMVILSLYLAAFALR
LLLAGLAHVHCKDAPDGAACRYFTTAERREWRTEDPQFLAEVLFAVTSMLSFTRLAYILP
AHESLGTLQISIGRMIDDMIRFMFILMIILTAFLCGLNNIYVPYQETERLGKFNETFQFL
FWTMLGMEERSVVDMPQFPVPEFVGRALYGTFTIVMVVVLLNMLIAMITGSFQKIEDAAD
VEWKFARSKLYLSYFREGLTLPVPFNILPSPKAVFYLLRRIFRFICCCCSCCKAKRPDHP
PVPTFANPGAGPGSGEGEPGSYRLRVLKALVQRYIETARREFEESRRKDLGNRLTELTKT
VSRLQSEVAGVHRALAEGGMRQPPDGASILSRYITRVRNSFQNLGPPIPETPELTVPGVV
GTQVTSEMGLQDAGGARRPASGESGPASPARVLVHREQESEQAGDLAKADELGAKEGS
NT seq
3777 nt
NT seq
+upstream
nt +downstream
nt
atggctcctgtgaagattagccacgtggtgtcattttcatctcaggatcccaaatatccg
gtggcgaacttgctgaacccagacagtcagaggggaccttggctcagctgccctcgggac
aagagtggacaactgaaagtggagcttcagctggagagggcagtgcccatcggctacatt
gacgtgggtaactgtggctgtgctttcctgcagattgatgtgggtcgttcgtcctggtcc
ctggacaggccttttgtcaccctgctccctgcaaccatgctgatgtccctggctgactca
aagcaggggaaaaaccgctcgggggtccgcatgtttaaagatgacgacttcttggctccg
gcctcaggcgagtcatgggatcgacttcgcctgacctgctcccagcccttcacgcgtcac
cagtccttcggcctggccttcctgcgggtgtgctcctctctggactcctcgggcgaccct
gcggtggggccctcgggccctacacgaagcaggatgtcccacggctcttctgatgcgcag
gagcctggtcccagcccctggctggctaatccttccatccggaggacgttcttcccggat
cctcaaacgagcaccagggaaatttcagagctcaggaacatcctccagcagctgcagccg
gggacgctgggccgttccgcctgcatggtgctttctgctgcccgcaaggcagctccagcc
tgtgtggcagacccacacacccgccaagcagaaccaggtcccaggcatcgaggcagcgca
gagtccagaccggaggagcgaaactcagggagtgacgagggcaggacgaagaggcgcaaa
gtgcaggcccgcaggcctgtgtccagctcgaaccctcaggcacagcggaaggagccagca
aaggcaggccgaagagaacgccgtccaccccagacccgaaggagcggtgcccaggagagg
ggacagtgccccatttgcacaggctccttcagcctggaggtgctcccccagcacgccgcc
acttgtggggagaccgcctctccctcatcgtcaccgtctgcctcaccagcggaactctgg
catcctttaaccctcgagccccaccccctctgcttcctcatccagcctccgcctaactgg
cccgagattgtgaacagaaagctccagttcccacctccactgctgggtgccatccaggag
gggcggctgggcctggtgcagcagctgctggagtcgggggcagaggccccggggggcggg
ccaggcgggcccccgcggaacgtggaggaggccgaggaccgctcctggagggaggccctc
aatctggccatccgcctgggccacgaggccatcaccgacgtgctgttggccaatgtcaag
ttcgacttccggcagatccacgaggccctgctcgtggcggtggacacgaaccagccggcc
gtggtgcgccgcctgctggcccggctggaacgcgagaagggccgcaaggtggacaccagg
tctttctcgctggcgttctttgactcctcgatcgacggctcccgcttcgccccgggggtc
accccgctcaccctggcctgccagaaggacctgtatgagatcgcacagctgctcatggac
cagggccacaccatcgcccggccccacccggtctcctgtgcctgcctcgagtgcagcaac
gcccgccgctacgacctcctcaagttctccctgtcgcgcatcaacacctatcgcggcatc
gccagccgcgcccacctctccctggccagcgaggatgccctgctggccgccttccagctc
agccgcgagctcaggtgccttgcccgcaaggagcccgagtttaagcccgagtacatcgcc
ctggagtcgctgagccaggactacggcttcgaactgctgggcatgtgccggaaccagagc
gaggtcacggcagtgctcaatgacctgggcaaggacagcggggcggagcccgaggccgag
ggcctgggccaggcctttgaggaaggcatccccaacctggcgaggctgcgactggccgtc
aactacaaccagaagcggtttgtagcgcaccccatctgccagcaagtcctgtcctccatc
tggtgcgggaacctggctggctggcgcgggagcaccatcgtctggaagctcttcgtggcc
ttgctcatcttcctcgccatgcccttcctctgccttggctactggctggcgccgaagtcc
cggctgggccgcctgctgaagatccccgtgctgaagttcctgctgcactcggcctcctac
ctgtggttcctcatcttcctgctgggagagtccctggccatggagacgcagctcagtacc
ttccgcggccgcagccggagcgtctgggagacttcactacacatggtttgggtcacaggc
ttcctgtggttcgagtgcaaggaagtgtggatcgagggcctgcgcagttacctcctggac
tggtggaacttcctggacatggtcatcctgtccctgtacctggcggccttcgctctgcgc
ctcctcctggccgggctggcccacgtgcactgcaaggacgcgccagacggggccgcctgc
cgctacttcaccacggccgagcggcgcgagtggcgcacggaggacccccagttcttggcc
gaggtgctcttcgccgtcaccagcatgctcagcttcacccgcctggcctacatcctgcca
gcccacgagtcgctgggcaccctgcagatttccatcggcaggatgatcgacgacatgatc
cggttcatgttcattctcatgatcatcctgacggccttcctctgcggcctcaacaacatc
tacgtgccctaccaggagacggagcggctgggcaagttcaacgagaccttccagtttctg
ttctggaccatgttgggcatggaggagcgcagcgtggtcgacatgccccagtttccggtg
cccgagttcgtgggccgcgcgctctacggcaccttcaccatcgtcatggtcgtcgtgctg
ctcaacatgctcatcgccatgatcaccggctccttccagaagatcgaggacgctgctgac
gtggagtggaagttcgctcgctccaagctctacttgtcctacttccgagagggcctgacg
ctccccgtgcccttcaacatcctgccgtcccccaaggccgtcttctaccttctcaggcgg
atcttccggttcatttgctgttgctgctcctgctgcaaagccaagaggccagaccatccc
ccagtccccaccttcgccaatcccggggcggggccagggtccggggagggcgagcccgga
tcctaccgccttcgcgtcctcaaggcgctggtacagcgctacatcgagaccgcccggcgc
gagttcgaggagagccgtcgcaaagatctgggcaacagactgaccgagctgaccaagacg
gtgtctcgactgcaaagcgaggtggcgggcgtgcaccgggcgctggcggaaggagggatg
cgccagccacccgatggtgccagcatcctcagtcgctacatcaccagagtgcgcaacagc
ttccagaacctgggcccccccatccctgagaccccggagctgacagtgccaggggttgta
gggacccaggtgacctcagaaatggggcttcaggatgctggaggggctaggcgtccggct
tctggagagtctggccctgcctccccagctcgagtgctggtgcacagggagcaggaatca
gagcaggctggggacctggccaaggcagacgagctgggagccaaggaggggtcctga
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