Sus scrofa (pig): 100523163
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Entry
100523163 CDS
T01009
Symbol
HDAC9
Name
(RefSeq) histone deacetylase 9 isoform X1
KO
K11409
histone deacetylase 9 [EC:
3.5.1.98
]
Organism
ssc
Sus scrofa (pig)
Pathway
ssc04613
Neutrophil extracellular trap formation
ssc05034
Alcoholism
ssc05203
Viral carcinogenesis
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09150 Organismal Systems
09151 Immune system
04613 Neutrophil extracellular trap formation
100523163 (HDAC9)
09160 Human Diseases
09161 Cancer: overview
05203 Viral carcinogenesis
100523163 (HDAC9)
09165 Substance dependence
05034 Alcoholism
100523163 (HDAC9)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ssc03036
]
100523163 (HDAC9)
Enzymes [BR:
ssc01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
100523163 (HDAC9)
Chromosome and associated proteins [BR:
ssc03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
100523163 (HDAC9)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
HDAC4_Gln
Motif
Other DBs
NCBI-GeneID:
100523163
NCBI-ProteinID:
XP_020958118
Ensembl:
ENSSSCG00000015368
ENSSSCG00000015369
LinkDB
All DBs
Position
9:87164400..88192803
Genome browser
AA seq
1262 aa
AA seq
DB search
MQRKLSTSIRVRTYQIWFPLSQPLVDQRCQLKEGCESASQPISPSPDSRDEFTSAAWHLA
AKSGKVMESNVCITVPAYSQATLQKGNWEWGSVTRPGTCETSSCHPNGVAGREQLLAQQR
MHSMISSVDVKSEVPVGLEPISPLDLRTDLRMMMPVVDPVVREKQLQQELLLIQQQQQIQ
KQLLIAEFQKQHENLTRQHQAQLQEHIKLQQELLAIKQQQELLEKEQKLEQQRQEQEVER
HRREQQLPPLRGKDRGRESKRHQGAVASTEVKQKLQEFLLSKSATKDTPTNGKNHSVSRH
PKLWYTAAHHTSLDQSSPPLSGTSPSYKYTLPGAQDAKDDFPLRKTASEPNLKVRSRLKQ
KVAERRSSPLLRRKDGNVVTSFKKRMFEVTESSVSSSSPGSGPSSPNNGPAGNVTENETS
VLPPTPHAEKMVSQQRILIHEDSMNLLSLYTSPSLPNITLGLPAVPAQLNASNSLKEKQK
CETQTLRQGVPLPGQYGGSIPASSSHPHVTLEGKPNSSHQALLQHLLLKEQMRQQKLLVA
GGVPLHPQSPLATKERISPGIRGTHKLPRHRPLNRTQSAPLPQSTLAQLVIQQQHQQFLE
KQKQYQQQIHMNKLLSKSIEQLKQPGSHLEEAEEELQGDQAMQEDRAPSSGNSTRSDSSA
CADDSLGQVGAVKVKEEPVDSDEDAQIQEMESGEQAAFMQQPFLEPQHTRAISVRQAQLA
AVGMDGLEKHRLVSRTHSSPAASILPHPAMDRPLLPGSATGIAYDPLMLKHQCICGNSTT
HPEHAGRIQSIWSRLQETGLLNKCERIQGRKASLEEIQLVHSEHHSLLYGTNPLDGQKLD
PRTLLGDSSQKFFSSLPCGGLGVDSDTIWNELHSSGAARMAVGCVIELASKVASGELKNG
FAVVRPPGHHAEESTAMGFCFFNSVAITAKYLRDQLNISKILIVDLDVHHGNGTQQAFYA
DPSILYISLHRYDEGNFFPGSGAPNEVGTGLGEGYNINIAWTGGLDPPMGDIEYLEAFRT
VVKPVAKEFDPDMVLVSAGFDALEGHAPPLGGYKVTAKCFGHLTKQLMTLADGHVVLALE
GGHDLTAICDASEACVNALLGNELEPLAEDILHQTPNMNAVISLQKIIEIQSKYWKSVRM
LAVPGGCALAGAQLQEETETVSALASLTVDVEQPFAGEDSRYESNMGESLRSVTSRLVIS
VHEPLSRLSFTCHLHFQHLSSPKPQMPQNMLSAIKNSFVSFFMGNTELEHVVAVHREIEG
IR
NT seq
3789 nt
NT seq
+upstream
nt +downstream
nt
atgcagaggaagctatcaaccagcattcgtgtcagaacgtaccagatttggtttcccctt
tcccagcctctcgtggaccagcgttgccagctgaaggaaggttgtgaatctgcatcccag
cccattagtccttctcctgattcccgtgatgagttcaccagtgcagcctggcaccttgct
gcaaaaagtggcaaagtgatggaatcaaatgtatgcattacagttccagcatattcacag
gccaccctccagaaaggaaattgggagtggggcagtgtaacacgccctggcacctgtgag
acaagcagctgtcatcccaatggggtggctggacgagagcagctcttggctcagcagaga
atgcacagtatgatcagctcagtggatgtgaagtcagaggttcctgtgggcctggagccc
atctcgcctttagacctaaggacagacctcaggatgatgatgcctgtggtggaccctgtt
gtccgtgagaagcaactgcagcaggagttattgctcattcagcaacagcagcaaatccag
aagcagctcttgattgcagagtttcagaaacagcatgagaacttgacacggcagcatcag
gctcaacttcaggagcacatcaagttgcaacaggaacttctagccataaaacagcaacaa
gaactcctagaaaaggagcagaaactggagcagcagaggcaagaacaggaagtagagagg
catcgcagagaacagcagcttcctcctctcagaggcaaagatagaggacgagaaagtaag
aggcaccagggggcagtggcaagtacagaagtaaagcagaagcttcaagaattcctgttg
agtaaatcagcaacaaaagacactccaactaatggaaaaaatcattccgtgagccgccat
cccaagctctggtacacggctgcccaccacacgtcattggatcaaagctctccacccctg
agtggaacgtctccatcttacaaatacacattaccaggagctcaagatgcaaaagatgat
ttcccccttcgaaaaactgcctctgagcccaacttgaaggtgcggtccaggttaaaacag
aaagtggcagagaggagaagcagccccttactcaggcggaaggatggaaatgttgtcact
tcattcaagaagcgaatgtttgaggtgacagaatcctcggtcagtagcagctctccgggg
tctggtcccagttcaccaaacaatgggccagctggaaatgttactgaaaatgagacttcg
gttttgcctcctactcctcatgctgagaaaatggtttctcagcaacgcattctaattcac
gaagattccatgaacctgctaagtctttatacctctccctctttgcccaacattaccttg
ggacttccagcagtgccagcccagctcaatgcttcaaattcactcaaagaaaaacagaag
tgtgagacccagacactcaggcaaggtgttcctctgcctgggcagtatgggggcagcatc
ccggcatcttccagccatccccatgtcactttggaggggaagcccaacagcagccaccaa
gctctcctgcagcatttattactgaaagaacagatgcgacagcaaaagcttcttgtggct
ggtggcgttcccttacatcctcagtctcccttggcaacaaaagagagaatttcacctgga
attagaggtacccacaaattaccccgtcacagacccctgaatcgaacccagtctgcacct
ttgcctcagagcacattggctcagctggtcattcagcagcaacaccagcaattcttggag
aagcagaagcaataccagcagcagatccacatgaacaaactgctttcgaaatctattgaa
caactgaagcaaccaggcagtcacctcgaggaagcagaggaagagcttcagggggaccag
gcgatgcaggaagacagagcgccctctagtggcaacagcactaggagtgacagcagtgct
tgtgcggatgactcactgggacaagttggggctgtgaaggtcaaggaggaaccagtggac
agtgatgaagatgctcagatccaggaaatggaatctggggagcaggctgcttttatgcaa
cagcccttcctggagccccagcacacacgtgcgatctcggtgcgccaagctcagctggct
gcggttggcatggacggattagagaaacaccgtcttgtctccaggactcactcctcccca
gcggcctccattttacctcacccagcaatggaccgccccctcctgccaggctctgcaact
gggattgcctatgatcctctgatgctgaaacaccagtgcatttgtggcaattccaccacc
catccggagcatgctggacgaatacagagcatttggtcacggctgcaagaaactgggctg
ctaaataaatgtgagcgaattcaaggtcgaaaagccagcctggaggaaatacagcttgtt
cattctgaacatcactcactgttgtatggcactaaccccctggacggacagaagctggac
cccaggacactcttaggtgactcctctcaaaagtttttttcttcattaccttgtggtgga
cttggggtggacagtgacaccatttggaatgagctgcactcgtccggtgctgcacgcatg
gctgttggctgtgtcatcgagctggcttccaaagtggcctcaggagagctgaagaatggc
tttgctgttgtgaggcccccaggccatcatgctgaagaatccacagccatggggttctgc
ttttttaattcagttgcaattaccgccaaatacttgagagaccaactaaatataagcaag
atattgattgtagatctggatgttcaccatggaaatggtacacagcaggccttttatgcc
gaccccagcatcctgtatatttcactccatcgctatgatgaagggaactttttccctggc
agtggagccccaaatgaggttggaacaggccttggagaaggatacaatataaatattgcc
tggacaggtggccttgatcctcccatgggtgatatcgagtaccttgaagcattcaggact
gtggtgaagcctgtggccaaagagtttgatccagacatggtcctggtttctgctggattt
gatgcattagaaggccacgcccctcctctgggagggtacaaagtgacagcaaaatgcttt
ggtcatttgacgaagcaactgatgacactggctgatggacatgtggtgttggctctagaa
ggaggacatgatctgacagccatctgcgatgcatcagaagcctgtgtaaatgcccttcta
ggaaatgagctggagccacttgcagaagatattctccaccaaactccgaatatgaatgct
gttatttctttacagaagatcattgaaattcaaagtaaatactggaagtcagtaaggatg
ctggctgtgccagggggctgtgctctggctggggcacagttgcaggaggaaacagagact
gtttctgctctggcctccctgacagtggatgtggaacagccttttgctggagaagacagc
aggtatgaatccaacatgggggaatcattaaggtcagtaacatccaggctcgtcattagc
gttcatgaacctctctccaggctctccttcacctgtcacctccacttccagcacctgtct
tctcctaagccacagatgccacagaacatgctgtcggctatcaagaattcatttgtttca
ttcttcatgggaaatacagagctggagcatgtggttgcagttcacagagaaatagaaggg
ataagatag
DBGET
integrated database retrieval system
