Sus scrofa (pig): 100523834
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Entry
100523834 CDS
T01009
Symbol
HCFC1
Name
(RefSeq) LOW QUALITY PROTEIN: host cell factor 1
KO
K14966
host cell factor 1
Organism
ssc
Sus scrofa (pig)
Pathway
ssc03083
Polycomb repressive complex
ssc04980
Cobalamin transport and metabolism
ssc05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
100523834 (HCFC1)
09150 Organismal Systems
09154 Digestive system
04980 Cobalamin transport and metabolism
100523834 (HCFC1)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
100523834 (HCFC1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ssc01009
]
100523834 (HCFC1)
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ssc03036
]
100523834 (HCFC1)
03029 Mitochondrial biogenesis [BR:
ssc03029
]
100523834 (HCFC1)
Protein phosphatases and associated proteins [BR:
ssc01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
100523834 (HCFC1)
Chromosome and associated proteins [BR:
ssc03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
NSL complex
100523834 (HCFC1)
HMT complexes
COMPASS/SET1 complex
100523834 (HCFC1)
MLL-HCF complex
100523834 (HCFC1)
Polycomb repressive complex (PRC) and associated proteins
PR-DUB complex
100523834 (HCFC1)
Mitochondrial biogenesis [BR:
ssc03029
]
Mitochondrial quality control factors
Regulator of mitochondrial biogenesis
Other regulator of mitochondrial biogenesis
100523834 (HCFC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Kelch_HCF
Kelch_KLHDC2_KLHL20_DRC7
Beta-prop_FBX42
Beta-prop_ATRN-LZTR1
Kelch_1
Kelch_2
fn3
Kelch_FKB95
Motif
Other DBs
NCBI-GeneID:
100523834
NCBI-ProteinID:
XP_003135533
Ensembl:
ENSSSCG00000012793
Vega:
OTTSUSG00000004947
UniProt:
A0A480J3L4
LinkDB
All DBs
Position
X:complement(124673125..124694846)
Genome browser
AA seq
2029 aa
AA seq
DB search
MASAVSPANSPAVLLQPRWKRVVGWSGPVPRPRHGHRAVAIKELIVVFGGGNEGIVDELH
VYNTATNQWFIPAVRGDIPPGCAAYGFVCDGTRLLVFGGMVEYGKYSNDLYELQASRWEW
KRLKAKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNIPRYLNDLYILELRP
GSGVVAWDIPITYGVLPPPRESHTAVVYTEKDNKKSKLVIYGGMSGCRLGDLWTLDIETL
TWNKPSLSGVAPLPRSLHSATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTNTLACLN
LDTMAWETILMDTLEDNVPRARAGHCAVAINSRLYIWSGRDGYRKAWNNQVCCKDLWYLE
TEKPPPPARVQLVRANTNSLEVSWGAVATADSYLLQLQKYDIPATAATATSPTPNPVPSV
PANPPKSPAPAAAAPAVQPLTQVGITLLPQAAAAPPTTTTIQVLPTVPGSSISVPAAART
QGVPAVLKVTGPQATTGTPLVTMRPASQAGKAPVTVTSLPAGVRMVVPTQSAQGTVIGSS
PQMSGMAALAAAAAATQKIPPSSAPTVLSVPAGTTIVKTVAVTPGTTTLPATVKVASSPV
MVSNPATRMLKTAAAQVGTSVSSAANTSTRPIITVHKXGTVTVAQQAQVVTTVVGGVTKT
ITLVKSPISVPGGSALISNLGKVMSVVQTKPVQTSAVTGQASTGPVTQIIQTKGPLPAGT
ILKLVTSADGKPTTIITTTQAGGAGTKPTILGISSVSPSTTKPGTTTIIKTIPMSAIITQ
AGATGVTSSPGIKSPITIITTKVMTSGTGAPAKIITAVPKIATGHGQQGVTQVVLKGAPG
QPGTILRTVPMGGVRLVTPVTVSAVKPAVTTLVVKGTTGVTTLGTVTGTVSTSLAGAGGH
STSASLATPITTLGTIATLSSQVINPTAITVSAAQTTLTAAGGLTTPTITMQPVSQPTQV
TLITAPSGVEAQPVHDLPVSILASPTTEQPTATVTIADSGQGDVQPGTVTLVCSNPPCET
HETGTTNTATTTVVANLGGHPQPTQVQFVCDRQEAAASLVSSAVGQQNGSVVRVCSNPPC
ETHDTGTTNTATTATSNMAGQHGCANPPCETHETGTTSTATTAMSSLGAGQRRDARFACA
AGTVPAAAVRVGVAAGAAAGAAEGAQGAVKPSCQTRQTSATSTTMTVMATGAPCPAGPLL
RPSLALEAGGHGTALVQLGPVSAQVRAGSLGGEDSPLASLGSLVSVGRPLEAHRSHTTST
PTAACTDLGAGEPGEAQGTPVLVYESSAGPAVTATALEALLCSSAVVTRVCSNPPCETHE
TGTTHTPTTATSGGGAGQPEGGQQPPASRPCETHQTASTGTTMSVSVGALLPDAVPAHRT
PESGLEGAPSPTVTPQAAASLLAPFPTQRVCSNPPCETHETGTTHTATTVTSNMSSNQDP
PPPASDQGEVESTQGDSMNIASSSPITTTGSSTLTRAVTTVTQSTPVPGPSVPPPEELQA
SPGPRQQLPPRQLLQPAATPLMGESAEVLSASQTPELQAAVDLSSTGDPSSGQEPATSAV
VATVVVQPPPPTQSEVDQLSLPQELMAEAQAGTTTLMVTGLTPEELAVTAAAEAAAQAAA
TEEAQALAIQAVLQAAQQAVMGTGEPMDTSEAAAAVTQAELSHLSAEGQEGQATTIPIVL
TQQELAALVQQQQLQEAQAQQQQHHLPTEALAPADSLNDPTIESNCLNELAGAVPSTVAL
LPSTATESLAPSNTFVAPQPVVVASPAKLQAAATLTEVANGIEPLGVKPDLPPPPSKAPV
KKENQWFDVGVIKGTNVMVTHYFLPPDDAVPSDDDSGTVPDYNQLKKQELQPGTAYKFRV
AGINACGRGPFSEISAFKTCLPGFPGAPCAIKISKSPDGAHLTWEPPSVTSGKIIEYSVY
LAIQSSQAGGEPKSAAPAQLAFMRVYCGPSPSCLVQSSSLSNAHIDYTTKPAIIFRIAAR
NEKGYGPATQVRWLQETSKDSSGTKPASKRPMSSPEMKSAPKKSKADGP
NT seq
6090 nt
NT seq
+upstream
nt +downstream
nt
atggcttcggccgtgtcacccgccaactcgccagcggtgctcctgcagcctcgctggaag
cgagtggtgggctggtcgggtccagtaccccggccccgccacggccaccgcgccgtggcc
atcaaggagctcatcgtggtgtttggcggcggcaacgaggggatcgtggacgaactgcac
gtgtacaacacggcgaccaaccagtggttcatccccgccgtgaggggggacatccctcca
ggctgcgcggcctatggcttcgtgtgcgacgggacgcgcctgctggtgttcggaggcatg
gtggagtacgggaaatacagcaacgacctctacgagctgcaggcgagccgatgggagtgg
aagagactgaaggcaaagacgcccaaaaacgggccccctccgtgtcctcggctcgggcac
agcttctccctcgtgggcaacaaatgttacctgttcggaggtctggccaacgacagcgag
gaccccaagaacaacattcccaggtacctgaatgacttatacatcctggaactgcggcca
ggctctggagtggtagcctgggacattcccatcacttacggtgtcctgcccccgccgcgg
gagtcgcatacggccgtggtctacaccgagaaagacaacaagaagtccaagctggtgatc
tatggagggatgagtggctgcaggctaggcgacctctggaccctggatattgagactctg
acgtggaacaagcccagtctcagtggggtggcacctcttcctcggagcctccactcggcc
acgacgataggaaacaaaatgtacgtgtttggtggctgggtgcctctcgtcatggatgac
gtcaaagtggccacacacgagaaggagtggaagtgtaccaacacactggcttgtctcaac
ctggacaccatggcctgggagaccatcctgatggacacgctggaggacaacgtcccccgg
gcccgagccggccactgcgccgtcgccatcaacagccgcctgtacatttggagtgggcgt
gacggctaccgaaaggcctggaacaaccaggtctgctgcaaggacctctggtacctggag
acagaaaagccaccgcccccggcccgggtgcagctggtgcgagccaacaccaactcgctg
gaggtgagctggggggcagtggccacagccgacagttaccttctgcagctccagaaatat
gacattcctgccacggctgctactgccacctcccccacacccaatccagtcccgtctgtg
cctgccaaccctcccaagagccctgcccccgcagcagccgcacctgccgtgcagccgctg
acccaagtaggcatcacgctcctgccccaggctgccgccgcgcccccgaccaccaccacc
atccaggtcttgccgacggtgcccggcagctcgatttccgtgcccgctgcagccaggact
caaggtgtccccgctgtgctcaaagtgaccggtcctcaggctacaacgggaaccccgttg
gttaccatgcgacctgccagccaggctgggaaagcccccgtcactgtgacctccctccct
gcaggcgtgcggatggtcgtgcctacgcagagtgcccagggcacggtcatcggcagcagc
ccgcagatgagtggcatggccgccttggcagcagcggccgccgccacccagaagatccct
ccgtcctcggcacccacagtgctgagcgtcccagccggcaccaccatcgtcaagacagtg
gccgtgacgcctggcaccaccacgctcccagccaccgtgaaggtggcttcctcgcctgtc
atggtgagcaacccagccactcgcatgctgaagaccgcggctgcccaggtggggacgtcc
gtctcctctgcggccaacacgtccacccgtcccatcatcacagtacacaagntcgggact
gtgacagtggcccagcaagcccaggtggtgaccacggtggtgggtggggtcaccaagacc
atcaccctggtgaagagtcccatctccgtccccggaggcagtgctctgatttccaacctg
ggcaaggtgatgtctgtggtccagaccaagccagttcagacctccgccgtcacgggccag
gcgtccaccggcccggtgactcagatcatccagaccaaagggcccctgccagccgggacc
atcctgaagctggtgacgtccgcagacggcaagcccaccaccatcatcacgaccacgcag
gctggcggggcaggcacgaagcccaccattcttggcatcagcagcgtgtcccccagcacc
acgaagccgggcaccaccaccatcatcaagaccatccccatgtcagccatcatcacgcag
gcgggcgccacgggtgtgaccagcagtcctggcatcaagtcccccatcaccatcatcacc
accaaggtgatgacctccggaaccggagcccccgccaagatcatcactgccgtgcccaaa
atcgccaccggccacgggcagcaaggcgtgacccaggtggtgctgaagggcgcgccgggc
cagccgggcaccatcctccgcaccgtgcccatggggggcgtccgcctggtcacccccgtc
accgtctccgcagtcaagccggctgtcaccacgttggttgtgaagggcaccacaggcgtc
acaactctgggcacagtgacaggcacggtctccaccagcctcgccggagccgggggccac
agcaccagcgcctccctggccacgcccatcaccaccctgggcaccattgccaccctctcg
agccaggtgatcaaccccactgccatcactgtgtcggcggcgcagaccacgctgacggcg
gccggcggcctcaccacccccaccatcaccatgcagcccgtctcgcagcccacccaggtg
actctgatcacagcccccagcggggtcgaggcccagcctgtgcacgacctcccggtgtcc
atcctggcctcgcccaccacagagcagcccacggccaccgtcaccattgccgactcgggc
cagggcgacgtgcagcctggcaccgtgaccctggtgtgctccaacccgccctgtgagacc
catgagacgggcaccaccaacacggccaccaccaccgtcgtggctaacctcggggggcac
ccccagcccacccaagtgcagttcgtctgtgacagacaggaggccgccgcttctctcgtg
agctccgcggtggggcagcagaatggcagcgtggtccgagtctgctccaacccgccgtgc
gagacccacgacacgggcaccaccaacacggccaccaccgccacctccaacatggccggg
cagcacggctgcgccaacccgccctgcgagacccacgagacgggcaccaccagcacggcc
accaccgccatgtcgagcctcggggccggccagcggcgagacgcccggttcgcctgtgcg
gccggcaccgtgcccgccgctgcggtccgggtcggcgtggctgctggcgcggctgccggc
gccgcagagggtgcccagggcgccgtcaagccctcatgccaaacccgccagaccagcgcc
accagcaccaccatgactgtgatggccactggggccccgtgtcctgctggcccgctcctc
cgacccagcctggccctggaggccggcgggcacggcactgccctggtgcagttaggcccc
gtgagcgcccaggtcagagccggcagcctgggcggcgaggacagccccctggccagcctg
ggctcgctggtgtctgtggggcgcccgctggaggcacaccgcagccacacgaccagcacc
cccactgcggcctgcactgacctgggcgctggggagcctggcgaggcgcagggcaccccc
gtgctcgtgtacgagagctcagccggccccgccgtgactgcaacagccctggaggcgctg
ctgtgctcctcggccgtcgtgacccgggtttgctccaacccgccttgcgagacccacgag
acgggcactacccacacgcccaccaccgccacgtcgggagggggcgcgggccaaccagag
ggtgggcagcagccccccgccagccgcccctgcgagacacaccagaccgcttccactggc
accaccatgtcggtcagcgtgggcgccctgctccccgacgccgtgcccgcccacaggacc
ccggagtccggcttggagggggcaccgtcccccacggtcactccccaggccgctgcttca
ttgctggctcccttcccgacgcagagggtctgctccaaccccccctgcgagacccacgag
acgggcaccacacacacggccaccaccgtcacctccaacatgagctccaaccaagatccc
ccaccacctgccagcgaccagggagaggtggagagcacccagggcgacagcatgaatatt
gccagttccagtcccattacaacgacggggtcctccacgctgacgcgggctgtgaccacc
gtgacacagtccacaccggtgcccggcccttcggtgccgcccccagaggagctccaggcc
tcgccagggcctcgccagcagcttccgccacggcaactcctgcagcccgccgccacgccc
ctgatgggggagtccgctgaggtgctgtctgcctcccagacccctgagctccaggccgcc
gtggatctgagcagtacaggggacccgtcttcaggccaggagcctgccacctcggccgtg
gtggccactgtggtggtccagcctcccccgcccacgcagtccgaagtagaccagttgtcg
cttccgcaagagctgatggccgaggcgcaggcagggaccaccaccctcatggtaacgggg
ctcacccccgaggagctggcggtgactgcagctgccgaggcggccgcccaggccgcggcc
acggaggaagcccaggccctggccatccaggccgtgctccaggccgcacagcaggctgtc
atgggcaccggggagcccatggacacatctgaggcagcggcggctgtgacccaggcggag
ctgagccacctgtcggctgagggccaggagggtcaggccaccaccatccccattgtgctg
acacagcaggagctggccgccctggtgcagcagcagcagctccaggaggcgcaggcccag
cagcagcagcaccacctccccaccgaggccctggcccctgccgacagcctcaacgacccc
accatcgagagcaactgcctcaacgagctggccggggccgtccccagcaccgtggccctg
ctcccgtccacggccaccgagagcctggctccatccaacacgtttgtggccccccagcca
gtcgtggtcgccagtcccgcgaagctgcaggccgcagctaccctgaccgaggtggccaac
ggcattgagcccctgggcgtgaagccggacctaccgcccccgcccagcaaagcccccgtg
aagaaggagaaccagtggtttgacgtgggcgtcatcaagggcaccaacgtgatggtgacg
cactatttcctgccacccgatgacgccgtgccgtcggacgatgactccggcactgtcccc
gactacaaccagctgaagaagcaggagctgcagccgggcactgcctacaagttccgagtc
gccgggatcaacgcctgcggccgggggccgttcagcgagatctcggcctttaagacgtgt
ctgcccggcttcccgggggccccctgtgccatcaagatcagcaaaagtcccgatggagcc
cacctgacctgggagccgccctccgtaacctccggcaagatcatcgagtactcggtgtac
ctggccatccagagctcgcaggccggcggcgagcccaagagcgccgccccggcccagctg
gccttcatgcgggtatactgcgggcccagcccctcctgcctcgtgcagtcctccagcctc
tccaacgcccacatcgactacaccaccaagcccgccatcatcttccgcatcgccgcccgc
aacgagaagggctacggcccagccacccaagtcaggtggttgcaagaaaccagtaaagac
agctctggcaccaagccggccagcaagcggcccatgtcctctccggaaatgaaatccgct
ccaaagaagtcgaaggcagacggtccgtga
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integrated database retrieval system
